AVP (arginine vasopressin) - Rat Genome Database

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Gene: AVP (arginine vasopressin) Canis lupus familiaris
Analyze
Symbol: AVP
Name: arginine vasopressin
RGD ID: 12106395
Description: ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity involved in apoptotic process (ortholog); neuropeptide hormone activity (ortholog); protein kinase activity (ortholog); INVOLVED IN ERK1 and ERK2 cascade (ortholog); grooming behavior (ortholog); hyperosmotic salinity response (ortholog); PARTICIPATES IN vasopressin signaling pathway; vasopressin signaling pathway via receptor type 1; vasopressin signaling pathway via receptor type 2; ASSOCIATED WITH acute kidney failure (ortholog); amnestic disorder (ortholog); Angina Pectoris (ortholog); FOUND IN dendrite (ortholog); extracellular region (ortholog); extracellular space (ortholog); INTERACTS WITH acyclovir; dexamethasone
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: arginine vasopressin (neurophysin II, antidiuretic hormone, diabetes insipidus, neurohypophyseal); neurophysin II; vasopressin-neurophysin 2-copeptin
RGD Orthologs
Human
Mouse
Rat
Bonobo
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12418,183,057 - 18,184,827 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2418,183,057 - 18,184,883 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2418,011,435 - 18,013,192 (+)NCBI
ROS_Cfam_1.02418,601,989 - 18,603,744 (+)NCBI
UMICH_Zoey_3.12418,195,309 - 18,197,064 (+)NCBI
UNSW_CanFamBas_1.02418,307,955 - 18,309,707 (+)NCBI
UU_Cfam_GSD_1.02418,635,781 - 18,637,537 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
acyclovir  (EXP)
dexamethasone  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:23359662  


Genomics

Comparative Map Data
AVP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12418,183,057 - 18,184,827 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2418,183,057 - 18,184,883 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2418,011,435 - 18,013,192 (+)NCBI
ROS_Cfam_1.02418,601,989 - 18,603,744 (+)NCBI
UMICH_Zoey_3.12418,195,309 - 18,197,064 (+)NCBI
UNSW_CanFamBas_1.02418,307,955 - 18,309,707 (+)NCBI
UU_Cfam_GSD_1.02418,635,781 - 18,637,537 (+)NCBI
AVP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl203,082,556 - 3,084,724 (-)EnsemblGRCh38hg38GRCh38
GRCh38203,082,556 - 3,093,521 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37203,063,202 - 3,065,370 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36203,011,202 - 3,013,370 (-)NCBINCBI36hg18NCBI36
Build 34203,011,202 - 3,013,370NCBI
Celera203,125,188 - 3,127,356 (-)NCBI
Cytogenetic Map20p13NCBI
HuRef203,011,450 - 3,013,197 (-)NCBIHuRef
CHM1_1203,057,749 - 3,065,399 (-)NCBICHM1_1
Avp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392130,422,540 - 130,424,508 (-)NCBIGRCm39mm39
GRCm39 Ensembl2130,422,540 - 130,424,474 (-)Ensembl
GRCm382130,580,620 - 130,582,588 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2130,580,620 - 130,582,554 (-)EnsemblGRCm38mm10GRCm38
MGSCv372130,406,413 - 130,408,277 (-)NCBIGRCm37mm9NCBIm37
MGSCv362130,272,118 - 130,273,982 (-)NCBImm8
Celera2131,805,101 - 131,806,965 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map263.24NCBI
Avp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23117,793,447 - 117,805,091 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl3123,117,492 - 123,119,460 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03123,117,482 - 123,119,460 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03129,615,610 - 129,627,147 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43118,205,007 - 118,206,985 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13118,110,580 - 118,112,558 (-)NCBI
Celera3116,604,316 - 116,606,294 (-)NCBICelera
Cytogenetic Map3q36NCBI
AVP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1202,934,408 - 2,937,077 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0203,169,094 - 3,172,900 (-)NCBIMhudiblu_PPA_v0panPan3
AVP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1732,581,230 - 32,583,427 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11732,581,234 - 32,583,145 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21736,950,915 - 36,952,826 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103247178
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1233,761,066 - 33,764,608 (-)NCBI
ChlSab1.1 Ensembl233,761,140 - 33,763,172 (-)Ensembl
Vero_WHO_p1.0NW_02366607110,750,976 - 10,753,915 (+)NCBI
Avp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247414,208,305 - 4,210,097 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 1
Low 6
Below cutoff 2 18 4 2 4 2 3 5 7 7 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000010377   ⟹   ENSCAFP00000009620
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2418,183,057 - 18,184,827 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000083496   ⟹   ENSCAFP00000061071
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2418,183,057 - 18,184,883 (+)Ensembl
RefSeq Acc Id: NM_001197149   ⟹   NP_001184078
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12418,183,057 - 18,184,827 (+)NCBI
Dog10K_Boxer_Tasha2418,011,435 - 18,013,192 (+)NCBI
ROS_Cfam_1.02418,601,989 - 18,603,744 (+)NCBI
UMICH_Zoey_3.12418,195,309 - 18,197,064 (+)NCBI
UNSW_CanFamBas_1.02418,307,955 - 18,309,707 (+)NCBI
UU_Cfam_GSD_1.02418,635,781 - 18,637,537 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001184078 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAL93263 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001184078   ⟸   NM_001197149
- Peptide Label: precursor
- Sequence:
RefSeq Acc Id: ENSCAFP00000061071   ⟸   ENSCAFT00000083496
RefSeq Acc Id: ENSCAFP00000009620   ⟸   ENSCAFT00000010377


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000006432 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000009620 ENTREZGENE
Ensembl Transcript ENSCAFT00000010377 ENTREZGENE
NCBI Gene AVP ENTREZGENE
VGNC ID VGNC:38317 ENTREZGENE