PRDM14 (PR/SET domain 14) - Rat Genome Database

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Gene: PRDM14 (PR/SET domain 14) Canis lupus familiaris
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Symbol: PRDM14
Name: PR/SET domain 14
RGD ID: 12106122
Description: ENCODES a protein that exhibits histone methyltransferase binding (ortholog); methyltransferase regulator activity (ortholog); INVOLVED IN cell fate specification (ortholog); cell morphogenesis (ortholog); embryo implantation (ortholog); PARTICIPATES IN DNA modification pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); genetic disease (ortholog); lung non-small cell carcinoma (ortholog); FOUND IN intracellular membrane-bounded organelle (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: PR domain containing 14; PR domain zinc finger protein 14
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12919,203,798 - 19,220,149 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2919,203,807 - 19,220,518 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2919,420,735 - 19,479,950 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02919,300,801 - 19,317,150 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2919,300,810 - 19,317,144 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12919,340,296 - 19,356,663 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02919,406,772 - 19,423,122 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02919,687,457 - 19,703,818 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PRDM14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12919,203,798 - 19,220,149 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2919,203,807 - 19,220,518 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2919,420,735 - 19,479,950 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02919,300,801 - 19,317,150 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2919,300,810 - 19,317,144 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12919,340,296 - 19,356,663 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02919,406,772 - 19,423,122 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02919,687,457 - 19,703,818 (-)NCBIUU_Cfam_GSD_1.0
PRDM14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38870,051,651 - 70,071,252 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl870,051,651 - 70,071,693 (-)EnsemblGRCh38hg38GRCh38
GRCh37870,963,886 - 70,983,487 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36871,126,575 - 71,146,116 (-)NCBINCBI36Build 36hg18NCBI36
Build 34871,126,578 - 71,146,116NCBI
Celera866,961,694 - 66,981,231 (-)NCBICelera
Cytogenetic Map8q13.3NCBI
HuRef866,457,068 - 66,476,744 (-)NCBIHuRef
CHM1_1871,019,399 - 71,039,074 (-)NCBICHM1_1
T2T-CHM13v2.0870,481,509 - 70,501,107 (-)NCBIT2T-CHM13v2.0
Prdm14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39113,183,649 - 13,197,467 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl113,183,681 - 13,197,387 (-)EnsemblGRCm39 Ensembl
GRCm38113,113,428 - 13,127,163 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl113,113,457 - 13,127,163 (-)EnsemblGRCm38mm10GRCm38
MGSCv37113,103,509 - 13,117,244 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36113,098,642 - 13,112,377 (-)NCBIMGSCv36mm8
MGSCv36113,198,671 - 13,212,167 (-)NCBIMGSCv36mm8
Celera113,077,505 - 13,091,214 (-)NCBICelera
Cytogenetic Map1A3NCBI
cM Map14.1NCBI
Prdm14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8510,864,137 - 10,876,666 (+)NCBIGRCr8
mRatBN7.256,082,163 - 6,092,712 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl56,082,442 - 6,092,712 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.055,710,076 - 5,730,560 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl55,710,392 - 5,730,560 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0510,550,222 - 10,570,255 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera55,665,056 - 5,674,368 (+)NCBICelera
Cytogenetic Map5q11NCBI
Prdm14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554449,612,059 - 9,626,817 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554449,606,310 - 9,626,772 (+)NCBIChiLan1.0ChiLan1.0
PRDM14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2785,784,874 - 85,806,252 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1861,414,702 - 61,436,088 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0866,578,674 - 66,599,360 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1868,240,111 - 68,261,039 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl868,240,741 - 68,260,263 (-)Ensemblpanpan1.1panPan2
Prdm14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530359,964,384 - 59,979,219 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649614,806,928 - 14,820,967 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649614,789,443 - 14,820,967 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRDM14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl465,271,315 - 65,295,178 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1465,273,988 - 65,295,362 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2470,938,499 - 70,962,240 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PRDM14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1865,800,454 - 65,820,190 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl865,800,923 - 65,819,456 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603975,620,953 - 75,642,095 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prdm14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474421,104,798 - 21,120,591 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474421,092,091 - 21,121,313 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PRDM14
204 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system nervous system reproductive system respiratory system adipose tissue
High
Medium 8
Low
Below cutoff 3 2 9 4 1 6 7 5

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022412335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022412336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022412337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038441342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038441343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038441344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038515918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038515919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038515920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038579478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038579479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038579480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038643730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038643731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038643732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005316078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005316079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000048502   ⟹   ENSCAFP00000036507
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2919,203,807 - 19,220,518 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845044746   ⟹   ENSCAFP00845035062
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2919,300,810 - 19,317,144 (-)Ensembl
RefSeq Acc Id: XM_022412335   ⟹   XP_022268043
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12919,203,798 - 19,220,147 (-)NCBI
Dog10K_Boxer_Tasha2919,463,638 - 19,479,948 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022412336   ⟹   XP_022268044
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12919,203,798 - 19,220,147 (-)NCBI
Dog10K_Boxer_Tasha2919,463,638 - 19,479,949 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022412337   ⟹   XP_022268045
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12919,203,798 - 19,220,149 (-)NCBI
Dog10K_Boxer_Tasha2919,463,638 - 19,479,950 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038441342   ⟹   XP_038297270
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02919,300,801 - 19,317,148 (-)NCBI
RefSeq Acc Id: XM_038441343   ⟹   XP_038297271
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02919,300,801 - 19,317,149 (-)NCBI
RefSeq Acc Id: XM_038441344   ⟹   XP_038297272
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02919,300,801 - 19,317,150 (-)NCBI
RefSeq Acc Id: XM_038515918   ⟹   XP_038371846
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12919,340,296 - 19,356,661 (-)NCBI
RefSeq Acc Id: XM_038515919   ⟹   XP_038371847
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12919,340,296 - 19,356,662 (-)NCBI
RefSeq Acc Id: XM_038515920   ⟹   XP_038371848
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12919,340,296 - 19,356,663 (-)NCBI
RefSeq Acc Id: XM_038579478   ⟹   XP_038435406
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02919,687,457 - 19,703,816 (-)NCBI
RefSeq Acc Id: XM_038579479   ⟹   XP_038435407
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02919,687,457 - 19,703,817 (-)NCBI
RefSeq Acc Id: XM_038579480   ⟹   XP_038435408
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02919,687,457 - 19,703,818 (-)NCBI
RefSeq Acc Id: XM_038643730   ⟹   XP_038499658
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02919,406,772 - 19,423,120 (-)NCBI
RefSeq Acc Id: XM_038643731   ⟹   XP_038499659
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02919,406,772 - 19,423,121 (-)NCBI
RefSeq Acc Id: XM_038643732   ⟹   XP_038499660
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02919,406,772 - 19,423,122 (-)NCBI
RefSeq Acc Id: XR_005316078
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2919,438,751 - 19,479,950 (-)NCBI
RefSeq Acc Id: XR_005316079
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2919,420,735 - 19,479,950 (-)NCBI
RefSeq Acc Id: XP_022268045   ⟸   XM_022412337
- Peptide Label: isoform X3
- UniProtKB: A0A8C0KVN2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022268044   ⟸   XM_022412336
- Peptide Label: isoform X2
- UniProtKB: A0A8C0MQY4 (UniProtKB/TrEMBL),   A0A8I3PKE9 (UniProtKB/TrEMBL),   A0A8C0KVN2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022268043   ⟸   XM_022412335
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KVN2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000036507   ⟸   ENSCAFT00000048502
RefSeq Acc Id: XP_038371848   ⟸   XM_038515920
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038371847   ⟸   XM_038515919
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038371846   ⟸   XM_038515918
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038499660   ⟸   XM_038643732
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038499659   ⟸   XM_038643731
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038499658   ⟸   XM_038643730
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038297272   ⟸   XM_038441344
- Peptide Label: isoform X3
- UniProtKB: A0A8C0KVN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038297271   ⟸   XM_038441343
- Peptide Label: isoform X2
- UniProtKB: A0A8C0MQY4 (UniProtKB/TrEMBL),   A0A8I3PKE9 (UniProtKB/TrEMBL),   A0A8C0KVN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038297270   ⟸   XM_038441342
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KVN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038435408   ⟸   XM_038579480
- Peptide Label: isoform X3
- UniProtKB: A0A8C0KVN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038435407   ⟸   XM_038579479
- Peptide Label: isoform X2
- UniProtKB: A0A8C0KVN2 (UniProtKB/TrEMBL),   A0A8C0MQY4 (UniProtKB/TrEMBL),   A0A8I3PKE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038435406   ⟸   XM_038579478
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KVN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845035062   ⟸   ENSCAFT00845044746
Protein Domains
C2H2-type   SET


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000007696 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030009559 UniProtKB/TrEMBL
  ENSCAFG00040023281 UniProtKB/TrEMBL
  ENSCAFG00845025358 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000048502.3 UniProtKB/TrEMBL
  ENSCAFT00030017726.1 UniProtKB/TrEMBL
  ENSCAFT00040043255.1 UniProtKB/TrEMBL
  ENSCAFT00845044746 ENTREZGENE
  ENSCAFT00845044746.1 UniProtKB/TrEMBL
Gene3D-CATH 2.170.270.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro PRDM14_PR-SET UniProtKB/TrEMBL
  SET_dom UniProtKB/TrEMBL
  SET_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene PRDM14 ENTREZGENE
PANTHER PR DOMAIN ZINC FINGER PROTEIN UniProtKB/TrEMBL
  PR DOMAIN ZINC FINGER PROTEIN 14 UniProtKB/TrEMBL
Pfam PRDM2_PR UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PROSITE SET UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
  SSF82199 UniProtKB/TrEMBL
UniProt A0A8C0KVN2 ENTREZGENE
  A0A8C0MQY4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TJX1_CANLF UniProtKB/TrEMBL
  A0A8I3PKE9 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8P0SRF5 UniProtKB/TrEMBL
VGNC ID VGNC:44946 ENTREZGENE