REPIN1 (replication initiator 1) - Rat Genome Database

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Gene: REPIN1 (replication initiator 1) Canis lupus familiaris
Analyze
Symbol: REPIN1
Name: replication initiator 1
RGD ID: 12102220
Description: ENCODES a protein that exhibits sequence-specific DNA binding (ortholog); INVOLVED IN positive regulation of glucose import (ortholog); regulation of fatty acid transport (ortholog); ASSOCIATED WITH genetic disease (ortholog); long QT syndrome (ortholog); FOUND IN cytosol (ortholog); cytosolic ribosome (ortholog); lipid droplet (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11614,659,046 - 14,690,997 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1614,669,587 - 14,690,502 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1615,267,536 - 15,299,452 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01616,373,764 - 16,405,701 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1616,370,536 - 16,405,695 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11614,753,883 - 14,785,767 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01615,334,823 - 15,366,709 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01615,385,281 - 15,417,211 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
REPIN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11614,659,046 - 14,690,997 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1614,669,587 - 14,690,502 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1615,267,536 - 15,299,452 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01616,373,764 - 16,405,701 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1616,370,536 - 16,405,695 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11614,753,883 - 14,785,767 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01615,334,823 - 15,366,709 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01615,385,281 - 15,417,211 (+)NCBIUU_Cfam_GSD_1.0
REPIN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387150,368,096 - 150,374,039 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7150,368,189 - 150,374,044 (+)EnsemblGRCh38hg38GRCh38
GRCh377150,065,185 - 150,071,128 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367149,696,812 - 149,702,066 (+)NCBINCBI36Build 36hg18NCBI36
Build 347149,505,905 - 149,508,772NCBI
Celera7144,622,973 - 144,628,227 (+)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7143,882,207 - 143,887,461 (+)NCBIHuRef
CHM1_17150,072,703 - 150,077,957 (+)NCBICHM1_1
T2T-CHM13v2.07151,546,435 - 151,552,378 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27149,403,728 - 149,408,982 (+)NCBI
Repin1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39648,570,817 - 48,576,016 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl648,570,817 - 48,576,016 (+)EnsemblGRCm39 Ensembl
GRCm38648,593,883 - 48,599,082 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl648,593,883 - 48,599,082 (+)EnsemblGRCm38mm10GRCm38
MGSCv37648,543,882 - 48,549,081 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36648,523,526 - 48,528,670 (+)NCBIMGSCv36mm8
Celera649,104,840 - 49,110,039 (+)NCBICelera
Cytogenetic Map6B2.3NCBI
cM Map623.57NCBI
Repin1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8478,879,910 - 78,885,143 (+)NCBIGRCr8
mRatBN7.2477,548,724 - 77,554,242 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl477,548,849 - 77,554,257 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx482,756,470 - 82,761,680 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0478,531,969 - 78,537,179 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0476,972,250 - 76,977,460 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0478,232,454 - 78,237,498 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl478,233,332 - 78,236,781 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04142,896,159 - 142,901,182 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4476,688,429 - 76,690,141 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera472,488,962 - 72,490,674 (+)NCBICelera
Cytogenetic Map4q24NCBI
Repin1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554914,973,797 - 4,976,974 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554914,973,192 - 4,977,970 (+)NCBIChiLan1.0ChiLan1.0
REPIN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26186,816,002 - 186,821,239 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1738,826,266 - 38,831,507 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07141,984,725 - 141,989,973 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17154,137,378 - 154,142,614 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7154,137,478 - 154,141,516 (+)Ensemblpanpan1.1panPan2
Repin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051186,925,106 - 6,930,053 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365275,973,982 - 5,977,323 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365275,973,376 - 5,978,327 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
REPIN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1855,925,451 - 55,930,695 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11855,925,529 - 55,930,698 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
REPIN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121118,512,581 - 118,517,945 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21118,513,570 - 118,518,862 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607214,472,102 - 14,477,603 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Repin1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248006,118,979 - 6,122,921 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248006,118,002 - 6,153,200 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in REPIN1
391 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 5 16 2 6 5 12 10 5
Low 1 6 6 4 6 1 8 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003432079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005629648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005629649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005629650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005629651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005629653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014119877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014119878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022403835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038452524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038452525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038452526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038452528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038452529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038497245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038497246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038497247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038497248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038497249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038497250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038497251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038497252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038497253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038497254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038559669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038559670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038559671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038559672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038559673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038559674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038559675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038559676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038559677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038559678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038623674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038623675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038623676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038623677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038623678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038623680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038623681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038623682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038623683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038623684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038623685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038623686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038623687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038623688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038689426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038689427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038689428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038689429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038689430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038689432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038689433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038689434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038689435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038689436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000048690   ⟹   ENSCAFP00000036123
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1614,685,854 - 14,690,502 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000069056   ⟹   ENSCAFP00000044705
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1614,669,587 - 14,689,921 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845016411   ⟹   ENSCAFP00845012767
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1616,370,536 - 16,405,581 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845016437   ⟹   ENSCAFP00845012787
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1616,400,483 - 16,405,695 (+)Ensembl
RefSeq Acc Id: XM_003432079   ⟹   XP_003432127
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11614,685,117 - 14,690,997 (+)NCBI
Dog10K_Boxer_Tasha1615,293,690 - 15,299,452 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005629649   ⟹   XP_005629706
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11614,669,692 - 14,690,993 (+)NCBI
Dog10K_Boxer_Tasha1615,287,388 - 15,299,451 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005629650   ⟹   XP_005629707
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11614,685,927 - 14,690,997 (+)NCBI
Dog10K_Boxer_Tasha1615,294,265 - 15,299,452 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005629651   ⟹   XP_005629708
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11614,686,108 - 14,690,997 (+)NCBI
Dog10K_Boxer_Tasha1615,294,585 - 15,299,452 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005629653   ⟹   XP_005629710
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11614,685,927 - 14,690,997 (+)NCBI
Dog10K_Boxer_Tasha1615,294,268 - 15,299,452 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038452524   ⟹   XP_038308452
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1615,267,536 - 15,299,451 (+)NCBI
RefSeq Acc Id: XM_038452525   ⟹   XP_038308453
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1615,267,536 - 15,299,451 (+)NCBI
RefSeq Acc Id: XM_038452526   ⟹   XP_038308454
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1615,294,324 - 15,299,452 (+)NCBI
RefSeq Acc Id: XM_038452528   ⟹   XP_038308456
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1615,294,324 - 15,299,452 (+)NCBI
RefSeq Acc Id: XM_038452529   ⟹   XP_038308457
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1615,294,378 - 15,299,452 (+)NCBI
RefSeq Acc Id: XM_038497245   ⟹   XP_038353173
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11614,753,883 - 14,785,766 (+)NCBI
RefSeq Acc Id: XM_038497246   ⟹   XP_038353174
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11614,753,883 - 14,785,766 (+)NCBI
RefSeq Acc Id: XM_038497247   ⟹   XP_038353175
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11614,780,640 - 14,785,767 (+)NCBI
RefSeq Acc Id: XM_038497248   ⟹   XP_038353176
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11614,780,640 - 14,785,767 (+)NCBI
RefSeq Acc Id: XM_038497249   ⟹   XP_038353177
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11614,773,725 - 14,785,766 (+)NCBI
RefSeq Acc Id: XM_038497250   ⟹   XP_038353178
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11614,780,581 - 14,785,767 (+)NCBI
RefSeq Acc Id: XM_038497251   ⟹   XP_038353179
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11614,780,002 - 14,785,767 (+)NCBI
RefSeq Acc Id: XM_038497252   ⟹   XP_038353180
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11614,780,901 - 14,785,767 (+)NCBI
RefSeq Acc Id: XM_038497253   ⟹   XP_038353181
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11614,780,584 - 14,785,767 (+)NCBI
RefSeq Acc Id: XM_038497254   ⟹   XP_038353182
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11614,780,694 - 14,785,767 (+)NCBI
RefSeq Acc Id: XM_038559669   ⟹   XP_038415597
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01615,385,281 - 15,417,207 (+)NCBI
RefSeq Acc Id: XM_038559670   ⟹   XP_038415598
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01615,385,281 - 15,417,207 (+)NCBI
RefSeq Acc Id: XM_038559671   ⟹   XP_038415599
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01615,412,082 - 15,417,211 (+)NCBI
RefSeq Acc Id: XM_038559672   ⟹   XP_038415600
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01615,412,082 - 15,417,211 (+)NCBI
RefSeq Acc Id: XM_038559673   ⟹   XP_038415601
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01615,405,155 - 15,417,207 (+)NCBI
RefSeq Acc Id: XM_038559674   ⟹   XP_038415602
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01615,412,023 - 15,417,211 (+)NCBI
RefSeq Acc Id: XM_038559675   ⟹   XP_038415603
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01615,411,448 - 15,417,211 (+)NCBI
RefSeq Acc Id: XM_038559676   ⟹   XP_038415604
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01615,412,343 - 15,417,211 (+)NCBI
RefSeq Acc Id: XM_038559677   ⟹   XP_038415605
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01615,412,026 - 15,417,211 (+)NCBI
RefSeq Acc Id: XM_038559678   ⟹   XP_038415606
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01615,412,136 - 15,417,211 (+)NCBI
RefSeq Acc Id: XM_038623674   ⟹   XP_038479602
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01615,334,823 - 15,366,709 (+)NCBI
RefSeq Acc Id: XM_038623675   ⟹   XP_038479603
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01615,334,823 - 15,366,709 (+)NCBI
RefSeq Acc Id: XM_038623676   ⟹   XP_038479604
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01615,361,581 - 15,366,709 (+)NCBI
RefSeq Acc Id: XM_038623677   ⟹   XP_038479605
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01615,361,581 - 15,366,709 (+)NCBI
RefSeq Acc Id: XM_038623678   ⟹   XP_038479606
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01615,334,824 - 15,366,709 (+)NCBI
RefSeq Acc Id: XM_038623680   ⟹   XP_038479608
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01615,334,824 - 15,366,709 (+)NCBI
RefSeq Acc Id: XM_038623681   ⟹   XP_038479609
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01615,334,834 - 15,366,709 (+)NCBI
RefSeq Acc Id: XM_038623682   ⟹   XP_038479610
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01615,334,825 - 15,366,709 (+)NCBI
RefSeq Acc Id: XM_038623683   ⟹   XP_038479611
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01615,342,583 - 15,366,709 (+)NCBI
RefSeq Acc Id: XM_038623684   ⟹   XP_038479612
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01615,361,522 - 15,366,709 (+)NCBI
RefSeq Acc Id: XM_038623685   ⟹   XP_038479613
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01615,360,958 - 15,366,709 (+)NCBI
RefSeq Acc Id: XM_038623686   ⟹   XP_038479614
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01615,361,842 - 15,366,709 (+)NCBI
RefSeq Acc Id: XM_038623687   ⟹   XP_038479615
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01615,361,525 - 15,366,709 (+)NCBI
RefSeq Acc Id: XM_038623688   ⟹   XP_038479616
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01615,361,635 - 15,366,709 (+)NCBI
RefSeq Acc Id: XM_038689426   ⟹   XP_038545354
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01616,373,764 - 16,405,701 (+)NCBI
RefSeq Acc Id: XM_038689427   ⟹   XP_038545355
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01616,373,764 - 16,405,701 (+)NCBI
RefSeq Acc Id: XM_038689428   ⟹   XP_038545356
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01616,400,572 - 16,405,701 (+)NCBI
RefSeq Acc Id: XM_038689429   ⟹   XP_038545357
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01616,400,572 - 16,405,701 (+)NCBI
RefSeq Acc Id: XM_038689430   ⟹   XP_038545358
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01616,393,638 - 16,405,701 (+)NCBI
RefSeq Acc Id: XM_038689432   ⟹   XP_038545360
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01616,400,513 - 16,405,701 (+)NCBI
RefSeq Acc Id: XM_038689433   ⟹   XP_038545361
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01616,399,933 - 16,405,701 (+)NCBI
RefSeq Acc Id: XM_038689434   ⟹   XP_038545362
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01616,400,833 - 16,405,701 (+)NCBI
RefSeq Acc Id: XM_038689435   ⟹   XP_038545363
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01616,400,516 - 16,405,701 (+)NCBI
RefSeq Acc Id: XM_038689436   ⟹   XP_038545364
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01616,400,626 - 16,405,701 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003432127 (Get FASTA)   NCBI Sequence Viewer  
  XP_005629706 (Get FASTA)   NCBI Sequence Viewer  
  XP_005629707 (Get FASTA)   NCBI Sequence Viewer  
  XP_005629708 (Get FASTA)   NCBI Sequence Viewer  
  XP_005629710 (Get FASTA)   NCBI Sequence Viewer  
  XP_038308452 (Get FASTA)   NCBI Sequence Viewer  
  XP_038308453 (Get FASTA)   NCBI Sequence Viewer  
  XP_038308454 (Get FASTA)   NCBI Sequence Viewer  
  XP_038308456 (Get FASTA)   NCBI Sequence Viewer  
  XP_038308457 (Get FASTA)   NCBI Sequence Viewer  
  XP_038353173 (Get FASTA)   NCBI Sequence Viewer  
  XP_038353174 (Get FASTA)   NCBI Sequence Viewer  
  XP_038353175 (Get FASTA)   NCBI Sequence Viewer  
  XP_038353176 (Get FASTA)   NCBI Sequence Viewer  
  XP_038353177 (Get FASTA)   NCBI Sequence Viewer  
  XP_038353178 (Get FASTA)   NCBI Sequence Viewer  
  XP_038353179 (Get FASTA)   NCBI Sequence Viewer  
  XP_038353180 (Get FASTA)   NCBI Sequence Viewer  
  XP_038353181 (Get FASTA)   NCBI Sequence Viewer  
  XP_038353182 (Get FASTA)   NCBI Sequence Viewer  
  XP_038415597 (Get FASTA)   NCBI Sequence Viewer  
  XP_038415598 (Get FASTA)   NCBI Sequence Viewer  
  XP_038415599 (Get FASTA)   NCBI Sequence Viewer  
  XP_038415600 (Get FASTA)   NCBI Sequence Viewer  
  XP_038415601 (Get FASTA)   NCBI Sequence Viewer  
  XP_038415602 (Get FASTA)   NCBI Sequence Viewer  
  XP_038415603 (Get FASTA)   NCBI Sequence Viewer  
  XP_038415604 (Get FASTA)   NCBI Sequence Viewer  
  XP_038415605 (Get FASTA)   NCBI Sequence Viewer  
  XP_038415606 (Get FASTA)   NCBI Sequence Viewer  
  XP_038479602 (Get FASTA)   NCBI Sequence Viewer  
  XP_038479603 (Get FASTA)   NCBI Sequence Viewer  
  XP_038479604 (Get FASTA)   NCBI Sequence Viewer  
  XP_038479605 (Get FASTA)   NCBI Sequence Viewer  
  XP_038479606 (Get FASTA)   NCBI Sequence Viewer  
  XP_038479608 (Get FASTA)   NCBI Sequence Viewer  
  XP_038479609 (Get FASTA)   NCBI Sequence Viewer  
  XP_038479610 (Get FASTA)   NCBI Sequence Viewer  
  XP_038479611 (Get FASTA)   NCBI Sequence Viewer  
  XP_038479612 (Get FASTA)   NCBI Sequence Viewer  
  XP_038479613 (Get FASTA)   NCBI Sequence Viewer  
  XP_038479614 (Get FASTA)   NCBI Sequence Viewer  
  XP_038479615 (Get FASTA)   NCBI Sequence Viewer  
  XP_038479616 (Get FASTA)   NCBI Sequence Viewer  
  XP_038545354 (Get FASTA)   NCBI Sequence Viewer  
  XP_038545355 (Get FASTA)   NCBI Sequence Viewer  
  XP_038545356 (Get FASTA)   NCBI Sequence Viewer  
  XP_038545357 (Get FASTA)   NCBI Sequence Viewer  
  XP_038545358 (Get FASTA)   NCBI Sequence Viewer  
  XP_038545360 (Get FASTA)   NCBI Sequence Viewer  
  XP_038545361 (Get FASTA)   NCBI Sequence Viewer  
  XP_038545362 (Get FASTA)   NCBI Sequence Viewer  
  XP_038545363 (Get FASTA)   NCBI Sequence Viewer  
  XP_038545364 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000036123.3
  ENSCAFP00000044705.2
  ENSCAFP00030040459.1
  ENSCAFP00040031869.1
  ENSCAFP00040031901.1
  ENSCAFP00845012767
  ENSCAFP00845012767.1
  ENSCAFP00845012787
  ENSCAFP00845012787.1
RefSeq Acc Id: XP_005629706   ⟸   XM_005629649
- Peptide Label: isoform X5
- UniProtKB: A0A8C0PEK1 (UniProtKB/TrEMBL),   A0A8C0K0X6 (UniProtKB/TrEMBL),   A0A8I3NBJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003432127   ⟸   XM_003432079
- Peptide Label: isoform X5
- UniProtKB: A0A8C0PEK1 (UniProtKB/TrEMBL),   A0A8C0K0X6 (UniProtKB/TrEMBL),   A0A8I3NBJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005629707   ⟸   XM_005629650
- Peptide Label: isoform X5
- UniProtKB: A0A8C0PEK1 (UniProtKB/TrEMBL),   A0A8C0K0X6 (UniProtKB/TrEMBL),   A0A8I3NBJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005629710   ⟸   XM_005629653
- Peptide Label: isoform X6
- UniProtKB: A0A8I3NC28 (UniProtKB/TrEMBL),   A0A8P0SRK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005629708   ⟸   XM_005629651
- Peptide Label: isoform X5
- UniProtKB: A0A8C0PEK1 (UniProtKB/TrEMBL),   A0A8C0K0X6 (UniProtKB/TrEMBL),   A0A8I3NBJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000044705   ⟸   ENSCAFT00000069056
RefSeq Acc Id: ENSCAFP00000036123   ⟸   ENSCAFT00000048690
RefSeq Acc Id: XP_038353173   ⟸   XM_038497245
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038353174   ⟸   XM_038497246
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038353177   ⟸   XM_038497249
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038353179   ⟸   XM_038497251
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038353178   ⟸   XM_038497250
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038353181   ⟸   XM_038497253
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038353175   ⟸   XM_038497247
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038353176   ⟸   XM_038497248
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038353182   ⟸   XM_038497254
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038353180   ⟸   XM_038497252
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038479602   ⟸   XM_038623674
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038479603   ⟸   XM_038623675
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038479608   ⟸   XM_038623680
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038479606   ⟸   XM_038623678
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038479610   ⟸   XM_038623682
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038479609   ⟸   XM_038623681
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038479611   ⟸   XM_038623683
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038479613   ⟸   XM_038623685
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038479612   ⟸   XM_038623684
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038479615   ⟸   XM_038623687
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038479604   ⟸   XM_038623676
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038479605   ⟸   XM_038623677
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038479616   ⟸   XM_038623688
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038479614   ⟸   XM_038623686
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038545354   ⟸   XM_038689426
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038545355   ⟸   XM_038689427
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038545358   ⟸   XM_038689430
- Peptide Label: isoform X5
- UniProtKB: A0A8C0PEK1 (UniProtKB/TrEMBL),   A0A8C0K0X6 (UniProtKB/TrEMBL),   A0A8I3NBJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038545361   ⟸   XM_038689433
- Peptide Label: isoform X5
- UniProtKB: A0A8C0PEK1 (UniProtKB/TrEMBL),   A0A8C0K0X6 (UniProtKB/TrEMBL),   A0A8I3NBJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038545360   ⟸   XM_038689432
- Peptide Label: isoform X5
- UniProtKB: A0A8C0PEK1 (UniProtKB/TrEMBL),   A0A8C0K0X6 (UniProtKB/TrEMBL),   A0A8I3NBJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038545363   ⟸   XM_038689435
- Peptide Label: isoform X6
- UniProtKB: A0A8I3NC28 (UniProtKB/TrEMBL),   A0A8P0SRK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038545356   ⟸   XM_038689428
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038545357   ⟸   XM_038689429
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038545364   ⟸   XM_038689436
- Peptide Label: isoform X6
- UniProtKB: A0A8I3NC28 (UniProtKB/TrEMBL),   A0A8P0SRK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038545362   ⟸   XM_038689434
- Peptide Label: isoform X5
- UniProtKB: A0A8C0PEK1 (UniProtKB/TrEMBL),   A0A8C0K0X6 (UniProtKB/TrEMBL),   A0A8I3NBJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038308452   ⟸   XM_038452524
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038308453   ⟸   XM_038452525
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038308454   ⟸   XM_038452526
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038308456   ⟸   XM_038452528
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038308457   ⟸   XM_038452529
- Peptide Label: isoform X6
- UniProtKB: A0A8I3NC28 (UniProtKB/TrEMBL),   A0A8P0SRK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038415597   ⟸   XM_038559669
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038415598   ⟸   XM_038559670
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038415601   ⟸   XM_038559673
- Peptide Label: isoform X5
- UniProtKB: A0A8C0K0X6 (UniProtKB/TrEMBL),   A0A8C0PEK1 (UniProtKB/TrEMBL),   A0A8I3NBJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038415603   ⟸   XM_038559675
- Peptide Label: isoform X5
- UniProtKB: A0A8C0K0X6 (UniProtKB/TrEMBL),   A0A8C0PEK1 (UniProtKB/TrEMBL),   A0A8I3NBJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038415602   ⟸   XM_038559674
- Peptide Label: isoform X5
- UniProtKB: A0A8C0K0X6 (UniProtKB/TrEMBL),   A0A8C0PEK1 (UniProtKB/TrEMBL),   A0A8I3NBJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038415605   ⟸   XM_038559677
- Peptide Label: isoform X6
- UniProtKB: A0A8I3NC28 (UniProtKB/TrEMBL),   A0A8P0SRK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038415599   ⟸   XM_038559671
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038415600   ⟸   XM_038559672
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038415606   ⟸   XM_038559678
- Peptide Label: isoform X6
- UniProtKB: A0A8I3NC28 (UniProtKB/TrEMBL),   A0A8P0SRK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038415604   ⟸   XM_038559676
- Peptide Label: isoform X5
- UniProtKB: A0A8C0K0X6 (UniProtKB/TrEMBL),   A0A8C0PEK1 (UniProtKB/TrEMBL),   A0A8I3NBJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845012767   ⟸   ENSCAFT00845016411
RefSeq Acc Id: ENSCAFP00845012787   ⟸   ENSCAFT00845016437
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000029424 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030025098 UniProtKB/TrEMBL
  ENSCAFG00040019806 UniProtKB/TrEMBL
  ENSCAFG00845009310 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000048690.3 UniProtKB/TrEMBL
  ENSCAFT00000069056.2 UniProtKB/TrEMBL
  ENSCAFT00030046301.1 UniProtKB/TrEMBL
  ENSCAFT00040036593.1 UniProtKB/TrEMBL
  ENSCAFT00040036625.1 UniProtKB/TrEMBL
  ENSCAFT00845016411 ENTREZGENE
  ENSCAFT00845016411.1 UniProtKB/TrEMBL
  ENSCAFT00845016437 ENTREZGENE
  ENSCAFT00845016437.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report cfa:100687780 UniProtKB/TrEMBL
NCBI Gene REPIN1 ENTREZGENE
PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 200 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A8C0K0X6 ENTREZGENE
  A0A8C0PEK1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T7W0_CANLF UniProtKB/TrEMBL
  A0A8I3NBJ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NC28 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SRK9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:51824 ENTREZGENE