EFCAB3 (EF-hand calcium binding domain 3) - Rat Genome Database

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Gene: EFCAB3 (EF-hand calcium binding domain 3) Canis lupus familiaris
Analyze
Symbol: EFCAB3
Name: EF-hand calcium binding domain 3
RGD ID: 12102012
Description: ENCODES a protein that exhibits calcium ion binding (inferred); metal ion binding (inferred); ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: EF-hand calcium-binding domain-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1910,560,657 - 10,636,761 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl910,585,560 - 10,636,726 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha911,588,728 - 11,664,324 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0912,206,216 - 12,299,882 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1911,151,995 - 11,169,572 (+)NCBIUMICH_Zoey_3.1
UMICH_Zoey_3.1911,187,704 - 11,246,505 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0916,284,663 - 16,360,917 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0916,289,071 - 16,365,158 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
EFCAB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1910,560,657 - 10,636,761 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl910,585,560 - 10,636,726 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha911,588,728 - 11,664,324 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0912,206,216 - 12,299,882 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1911,151,995 - 11,169,572 (+)NCBIUMICH_Zoey_3.1
UMICH_Zoey_3.1911,187,704 - 11,246,505 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0916,284,663 - 16,360,917 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0916,289,071 - 16,365,158 (-)NCBIUU_Cfam_GSD_1.0
EFCAB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381762,370,218 - 62,416,480 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1762,343,941 - 62,416,480 (+)EnsemblGRCh38hg38GRCh38
GRCh371760,447,579 - 60,493,841 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361757,811,646 - 57,847,569 (+)NCBINCBI36Build 36hg18NCBI36
Celera1754,834,669 - 54,880,912 (+)NCBICelera
Cytogenetic Map17q23.2NCBI
HuRef1755,814,250 - 55,860,491 (+)NCBIHuRef
CHM1_11760,511,937 - 60,558,191 (+)NCBICHM1_1
T2T-CHM13v2.01763,240,163 - 63,286,406 (+)NCBIT2T-CHM13v2.0
Efcab3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911104,576,533 - 105,008,365 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11104,954,418 - 105,008,363 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl11104,576,533 - 105,008,220 (+)EnsemblGRCm39 Ensembl
GRCm3811105,008,985 - 105,117,537 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11105,063,592 - 105,117,537 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711104,953,533 - 104,978,851 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611104,882,925 - 104,933,627 (+)NCBIMGSCv36mm8
Celera11116,825,089 - 116,850,407 (+)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1168.61NCBI
Efcab3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81090,084,495 - 90,577,145 (+)NCBIGRCr8
mRatBN7.21089,583,526 - 90,077,260 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1089,644,522 - 90,077,259 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1095,096,042 - 95,126,630 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01094,559,217 - 94,589,811 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01089,977,208 - 90,007,896 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01093,304,559 - 93,332,849 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1093,305,969 - 93,332,702 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01093,063,814 - 93,093,159 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41094,469,169 - 94,501,102 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11094,011,230 - 94,515,216 (+)NCBI
Celera1088,730,638 - 88,760,671 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Efcab3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554789,281,610 - 9,350,763 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554789,284,421 - 9,778,849 (-)NCBIChiLan1.0ChiLan1.0
EFCAB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21978,537,723 - 78,573,672 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11783,355,566 - 83,391,509 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01756,400,219 - 56,481,228 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11761,621,266 - 61,688,607 (+)NCBIpanpan1.1PanPan1.1panPan2
Efcab3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560215,953,433 - 16,043,067 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365413,178,650 - 3,241,017 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365413,178,650 - 3,241,017 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EFCAB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1216,314,316 - 16,371,263 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11216,314,180 - 16,370,639 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21216,133,481 - 16,175,886 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103243284
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11658,862,282 - 59,182,243 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1658,862,436 - 58,899,212 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607729,659,270 - 29,728,477 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Efcab3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248496,096,061 - 6,163,181 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248496,095,960 - 6,172,734 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in EFCAB3
810 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 2 9 6 12 8 6
Low 3 5 13 6 6 6 4 4 6
Below cutoff 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005624205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005624209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005624211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005624213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005624214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005624215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022422783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022422784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022422785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022422786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022422787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022422788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022422789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038485095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038485096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038626820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038626821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038626829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038626839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_548039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000021234   ⟹   ENSCAFP00000019718
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl910,585,560 - 10,636,726 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000085397   ⟹   ENSCAFP00000045220
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl910,604,699 - 10,636,726 (+)Ensembl
RefSeq Acc Id: XM_005624209   ⟹   XP_005624266
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1910,560,657 - 10,636,761 (+)NCBI
Dog10K_Boxer_Tasha911,588,736 - 11,664,324 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005624211   ⟹   XP_005624268
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1910,560,657 - 10,636,761 (+)NCBI
Dog10K_Boxer_Tasha911,588,736 - 11,664,324 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005624213   ⟹   XP_005624270
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1910,581,726 - 10,636,761 (+)NCBI
Dog10K_Boxer_Tasha911,609,534 - 11,664,324 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005624215   ⟹   XP_005624272
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1910,604,682 - 10,636,761 (+)NCBI
Dog10K_Boxer_Tasha911,632,237 - 11,664,324 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022422789   ⟹   XP_022278497
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1910,560,657 - 10,636,761 (+)NCBI
Dog10K_Boxer_Tasha911,588,736 - 11,664,324 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038485095   ⟹   XP_038341023
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1911,151,995 - 11,169,572 (+)NCBI
RefSeq Acc Id: XM_038485096   ⟹   XP_038341024
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1911,187,704 - 11,246,505 (+)NCBI
RefSeq Acc Id: XM_038546957   ⟹   XP_038402885
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0916,289,071 - 16,347,761 (-)NCBI
RefSeq Acc Id: XM_038546958   ⟹   XP_038402886
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0916,289,071 - 16,347,761 (-)NCBI
RefSeq Acc Id: XM_038546959   ⟹   XP_038402887
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0916,289,071 - 16,365,158 (-)NCBI
RefSeq Acc Id: XM_038546960   ⟹   XP_038402888
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0916,289,071 - 16,365,158 (-)NCBI
RefSeq Acc Id: XM_038546961   ⟹   XP_038402889
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0916,289,071 - 16,349,857 (-)NCBI
RefSeq Acc Id: XM_038546962   ⟹   XP_038402890
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0916,289,071 - 16,365,158 (-)NCBI
RefSeq Acc Id: XM_038546963   ⟹   XP_038402891
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0916,289,071 - 16,349,857 (-)NCBI
RefSeq Acc Id: XM_038546964   ⟹   XP_038402892
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0916,289,071 - 16,344,042 (-)NCBI
RefSeq Acc Id: XM_038546965   ⟹   XP_038402893
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0916,289,071 - 16,346,934 (-)NCBI
RefSeq Acc Id: XM_038546966   ⟹   XP_038402894
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0916,289,071 - 16,321,150 (-)NCBI
RefSeq Acc Id: XM_038546967   ⟹   XP_038402895
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0916,289,071 - 16,321,158 (-)NCBI
RefSeq Acc Id: XM_038610924   ⟹   XP_038466852
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0916,284,663 - 16,343,679 (-)NCBI
RefSeq Acc Id: XM_038610925   ⟹   XP_038466853
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0916,284,663 - 16,343,679 (-)NCBI
RefSeq Acc Id: XM_038610926   ⟹   XP_038466854
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0916,284,663 - 16,360,917 (-)NCBI
RefSeq Acc Id: XM_038610927   ⟹   XP_038466855
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0916,284,663 - 16,360,917 (-)NCBI
RefSeq Acc Id: XM_038610928   ⟹   XP_038466856
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0916,284,663 - 16,345,775 (-)NCBI
RefSeq Acc Id: XM_038610929   ⟹   XP_038466857
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0916,284,663 - 16,360,917 (-)NCBI
RefSeq Acc Id: XM_038610930   ⟹   XP_038466858
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0916,284,663 - 16,345,775 (-)NCBI
RefSeq Acc Id: XM_038610931   ⟹   XP_038466859
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0916,284,663 - 16,340,054 (-)NCBI
RefSeq Acc Id: XM_038610932   ⟹   XP_038466860
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0916,284,663 - 16,342,871 (-)NCBI
RefSeq Acc Id: XM_038610933   ⟹   XP_038466861
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0916,284,663 - 16,317,124 (-)NCBI
RefSeq Acc Id: XM_038610934   ⟹   XP_038466862
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0916,284,663 - 16,317,133 (-)NCBI
RefSeq Acc Id: XM_038626820   ⟹   XP_038482748
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha911,603,976 - 11,664,324 (+)NCBI
RefSeq Acc Id: XM_038626821   ⟹   XP_038482749
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha911,603,976 - 11,664,324 (+)NCBI
RefSeq Acc Id: XM_038626829   ⟹   XP_038482757
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha911,588,728 - 11,664,324 (+)NCBI
RefSeq Acc Id: XM_038626839   ⟹   XP_038482767
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha911,608,894 - 11,664,324 (+)NCBI
RefSeq Acc Id: XM_038675908   ⟹   XP_038531836
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0912,240,960 - 12,299,882 (+)NCBI
RefSeq Acc Id: XM_038675909   ⟹   XP_038531837
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0912,240,960 - 12,299,882 (+)NCBI
RefSeq Acc Id: XM_038675910   ⟹   XP_038531838
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0912,206,216 - 12,299,882 (+)NCBI
RefSeq Acc Id: XM_038675911   ⟹   XP_038531839
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0912,206,257 - 12,299,882 (+)NCBI
RefSeq Acc Id: XM_038675912   ⟹   XP_038531840
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0912,206,216 - 12,299,882 (+)NCBI
RefSeq Acc Id: XM_038675913   ⟹   XP_038531841
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0912,232,336 - 12,299,882 (+)NCBI
RefSeq Acc Id: XM_038675914   ⟹   XP_038531842
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0912,224,202 - 12,299,882 (+)NCBI
RefSeq Acc Id: XM_038675915   ⟹   XP_038531843
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0912,238,864 - 12,299,882 (+)NCBI
RefSeq Acc Id: XM_038675916   ⟹   XP_038531844
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0912,206,216 - 12,299,882 (+)NCBI
RefSeq Acc Id: XM_038675917   ⟹   XP_038531845
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0912,238,864 - 12,299,882 (+)NCBI
RefSeq Acc Id: XM_038675918   ⟹   XP_038531846
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0912,244,419 - 12,299,882 (+)NCBI
RefSeq Acc Id: XM_038675919   ⟹   XP_038531847
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0912,241,570 - 12,299,882 (+)NCBI
RefSeq Acc Id: XM_038675920   ⟹   XP_038531848
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0912,267,411 - 12,299,882 (+)NCBI
RefSeq Acc Id: XM_038675921   ⟹   XP_038531849
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0912,267,397 - 12,299,882 (+)NCBI
RefSeq Acc Id: XM_548039   ⟹   XP_548039
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1910,604,669 - 10,636,761 (+)NCBI
Dog10K_Boxer_Tasha911,632,251 - 11,664,324 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005624266 (Get FASTA)   NCBI Sequence Viewer  
  XP_005624268 (Get FASTA)   NCBI Sequence Viewer  
  XP_005624270 (Get FASTA)   NCBI Sequence Viewer  
  XP_005624272 (Get FASTA)   NCBI Sequence Viewer  
  XP_022278497 (Get FASTA)   NCBI Sequence Viewer  
  XP_038341023 (Get FASTA)   NCBI Sequence Viewer  
  XP_038341024 (Get FASTA)   NCBI Sequence Viewer  
  XP_038402885 (Get FASTA)   NCBI Sequence Viewer  
  XP_038402886 (Get FASTA)   NCBI Sequence Viewer  
  XP_038402887 (Get FASTA)   NCBI Sequence Viewer  
  XP_038402888 (Get FASTA)   NCBI Sequence Viewer  
  XP_038402889 (Get FASTA)   NCBI Sequence Viewer  
  XP_038402890 (Get FASTA)   NCBI Sequence Viewer  
  XP_038402891 (Get FASTA)   NCBI Sequence Viewer  
  XP_038402892 (Get FASTA)   NCBI Sequence Viewer  
  XP_038402893 (Get FASTA)   NCBI Sequence Viewer  
  XP_038402894 (Get FASTA)   NCBI Sequence Viewer  
  XP_038402895 (Get FASTA)   NCBI Sequence Viewer  
  XP_038466852 (Get FASTA)   NCBI Sequence Viewer  
  XP_038466853 (Get FASTA)   NCBI Sequence Viewer  
  XP_038466854 (Get FASTA)   NCBI Sequence Viewer  
  XP_038466855 (Get FASTA)   NCBI Sequence Viewer  
  XP_038466856 (Get FASTA)   NCBI Sequence Viewer  
  XP_038466857 (Get FASTA)   NCBI Sequence Viewer  
  XP_038466858 (Get FASTA)   NCBI Sequence Viewer  
  XP_038466859 (Get FASTA)   NCBI Sequence Viewer  
  XP_038466860 (Get FASTA)   NCBI Sequence Viewer  
  XP_038466861 (Get FASTA)   NCBI Sequence Viewer  
  XP_038466862 (Get FASTA)   NCBI Sequence Viewer  
  XP_038482748 (Get FASTA)   NCBI Sequence Viewer  
  XP_038482749 (Get FASTA)   NCBI Sequence Viewer  
  XP_038482757 (Get FASTA)   NCBI Sequence Viewer  
  XP_038482767 (Get FASTA)   NCBI Sequence Viewer  
  XP_038531836 (Get FASTA)   NCBI Sequence Viewer  
  XP_038531837 (Get FASTA)   NCBI Sequence Viewer  
  XP_038531838 (Get FASTA)   NCBI Sequence Viewer  
  XP_038531839 (Get FASTA)   NCBI Sequence Viewer  
  XP_038531840 (Get FASTA)   NCBI Sequence Viewer  
  XP_038531841 (Get FASTA)   NCBI Sequence Viewer  
  XP_038531842 (Get FASTA)   NCBI Sequence Viewer  
  XP_038531843 (Get FASTA)   NCBI Sequence Viewer  
  XP_038531844 (Get FASTA)   NCBI Sequence Viewer  
  XP_038531845 (Get FASTA)   NCBI Sequence Viewer  
  XP_038531846 (Get FASTA)   NCBI Sequence Viewer  
  XP_038531847 (Get FASTA)   NCBI Sequence Viewer  
  XP_038531848 (Get FASTA)   NCBI Sequence Viewer  
  XP_038531849 (Get FASTA)   NCBI Sequence Viewer  
  XP_548039 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000019718.4
  ENSCAFP00000045220.1
  ENSCAFP00030015725.1
  ENSCAFP00030015737.1
  ENSCAFP00040020607.1
  ENSCAFP00040020646.1
  ENSCAFP00845022862
  ENSCAFP00845022862.1
  ENSCAFP00845022995
  ENSCAFP00845022995.1
RefSeq Acc Id: XP_005624266   ⟸   XM_005624209
- Peptide Label: isoform X3
- UniProtKB: A0A8C0MWZ9 (UniProtKB/TrEMBL),   A0A8P0NF33 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005624268   ⟸   XM_005624211
- Peptide Label: isoform X5
- UniProtKB: A0A8C0MWZ9 (UniProtKB/TrEMBL),   A0A8P0NF33 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005624270   ⟸   XM_005624213
- Peptide Label: isoform X7
- UniProtKB: A0A8C0MWZ9 (UniProtKB/TrEMBL),   A0A8P0NF33 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_548039   ⟸   XM_548039
- Peptide Label: isoform X9
- UniProtKB: A0A8C0MX08 (UniProtKB/TrEMBL),   A0A8P0NVG6 (UniProtKB/TrEMBL),   A0A8C0SFY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005624272   ⟸   XM_005624215
- Peptide Label: isoform X9
- UniProtKB: A0A8C0MX08 (UniProtKB/TrEMBL),   A0A8P0NVG6 (UniProtKB/TrEMBL),   A0A8C0SFY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022278497   ⟸   XM_022422789
- Peptide Label: isoform X3
- UniProtKB: A0A8C0MWZ9 (UniProtKB/TrEMBL),   A0A8P0NF33 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000019718   ⟸   ENSCAFT00000021234
RefSeq Acc Id: ENSCAFP00000045220   ⟸   ENSCAFT00000085397
RefSeq Acc Id: XP_038341023   ⟸   XM_038485095
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038341024   ⟸   XM_038485096
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038466855   ⟸   XM_038610927
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038466857   ⟸   XM_038610929
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038466854   ⟸   XM_038610926
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038466858   ⟸   XM_038610930
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038466856   ⟸   XM_038610928
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038466853   ⟸   XM_038610925
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038466852   ⟸   XM_038610924
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038466860   ⟸   XM_038610932
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038466859   ⟸   XM_038610931
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038466862   ⟸   XM_038610934
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038466861   ⟸   XM_038610933
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038531838   ⟸   XM_038675910
- Peptide Label: isoform X3
- UniProtKB: A0A8I3P529 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038531844   ⟸   XM_038675916
- Peptide Label: isoform X5
- UniProtKB: A0A8I3P529 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038531840   ⟸   XM_038675912
- Peptide Label: isoform X3
- UniProtKB: A0A8I3P529 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038531839   ⟸   XM_038675911
- Peptide Label: isoform X3
- UniProtKB: A0A8I3P529 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038531842   ⟸   XM_038675914
- Peptide Label: isoform X3
- UniProtKB: A0A8I3P529 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038531841   ⟸   XM_038675913
- Peptide Label: isoform X3
- UniProtKB: A0A8I3P529 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038531843   ⟸   XM_038675915
- Peptide Label: isoform X4
- UniProtKB: A0A8I3P529 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038531845   ⟸   XM_038675917
- Peptide Label: isoform X6
- UniProtKB: A0A8I3P529 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038531836   ⟸   XM_038675908
- Peptide Label: isoform X1
- UniProtKB: A0A8I3P529 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038531837   ⟸   XM_038675909
- Peptide Label: isoform X2
- UniProtKB: A0A8I3P529 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038531847   ⟸   XM_038675919
- Peptide Label: isoform X8
- UniProtKB: A0A8I3P529 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038531846   ⟸   XM_038675918
- Peptide Label: isoform X7
- UniProtKB: A0A8I3P529 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038531849   ⟸   XM_038675921
- Peptide Label: isoform X9
- UniProtKB: A0A8I3RZ97 (UniProtKB/TrEMBL),   A0A8C0SFY2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038531848   ⟸   XM_038675920
- Peptide Label: isoform X9
- UniProtKB: A0A8I3RZ97 (UniProtKB/TrEMBL),   A0A8C0SFY2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038482757   ⟸   XM_038626829
- Peptide Label: isoform X12
- UniProtKB: A0A8C0MWZ9 (UniProtKB/TrEMBL),   A0A8P0NF33 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038482748   ⟸   XM_038626820
- Peptide Label: isoform X4
- UniProtKB: A0A8C0MWZ9 (UniProtKB/TrEMBL),   A0A8P0NF33 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038482749   ⟸   XM_038626821
- Peptide Label: isoform X6
- UniProtKB: A0A8C0MWZ9 (UniProtKB/TrEMBL),   A0A8P0NF33 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038482767   ⟸   XM_038626839
- Peptide Label: isoform X8
- UniProtKB: A0A8C0MWZ9 (UniProtKB/TrEMBL),   A0A8P0NF33 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402888   ⟸   XM_038546960
- Peptide Label: isoform X3
- UniProtKB: A0A8C0MWZ9 (UniProtKB/TrEMBL),   A0A8P0NF33 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402890   ⟸   XM_038546962
- Peptide Label: isoform X5
- UniProtKB: A0A8C0MWZ9 (UniProtKB/TrEMBL),   A0A8P0NF33 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402887   ⟸   XM_038546959
- Peptide Label: isoform X3
- UniProtKB: A0A8C0MWZ9 (UniProtKB/TrEMBL),   A0A8P0NF33 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402891   ⟸   XM_038546963
- Peptide Label: isoform X6
- UniProtKB: A0A8C0MWZ9 (UniProtKB/TrEMBL),   A0A8P0NF33 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402889   ⟸   XM_038546961
- Peptide Label: isoform X4
- UniProtKB: A0A8C0MWZ9 (UniProtKB/TrEMBL),   A0A8P0NF33 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402886   ⟸   XM_038546958
- Peptide Label: isoform X2
- UniProtKB: A0A8C0MWZ9 (UniProtKB/TrEMBL),   A0A8P0NF33 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402885   ⟸   XM_038546957
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MWZ9 (UniProtKB/TrEMBL),   A0A8P0NF33 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402893   ⟸   XM_038546965
- Peptide Label: isoform X8
- UniProtKB: A0A8C0MWZ9 (UniProtKB/TrEMBL),   A0A8P0NF33 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402892   ⟸   XM_038546964
- Peptide Label: isoform X7
- UniProtKB: A0A8C0MWZ9 (UniProtKB/TrEMBL),   A0A8P0NF33 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402895   ⟸   XM_038546967
- Peptide Label: isoform X9
- UniProtKB: A0A8C0MX08 (UniProtKB/TrEMBL),   A0A8C0SFY2 (UniProtKB/TrEMBL),   A0A8P0NVG6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402894   ⟸   XM_038546966
- Peptide Label: isoform X9
- UniProtKB: A0A8C0MX08 (UniProtKB/TrEMBL),   A0A8C0SFY2 (UniProtKB/TrEMBL),   A0A8P0NVG6 (UniProtKB/TrEMBL)
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000013375 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030009630 UniProtKB/TrEMBL
  ENSCAFG00040012793 UniProtKB/TrEMBL
  ENSCAFG00845016318 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000021234.5 UniProtKB/TrEMBL
  ENSCAFT00000085397.2 UniProtKB/TrEMBL
  ENSCAFT00030018006.1 UniProtKB/TrEMBL
  ENSCAFT00030018023.1 UniProtKB/TrEMBL
  ENSCAFT00040023728.1 UniProtKB/TrEMBL
  ENSCAFT00040023772.1 UniProtKB/TrEMBL
  ENSCAFT00845029067 ENTREZGENE
  ENSCAFT00845029067.1 UniProtKB/TrEMBL
  ENSCAFT00845029237 ENTREZGENE
  ENSCAFT00845029237.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
NCBI Gene EFCAB3 ENTREZGENE
PANTHER EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 13 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam EF-hand_8 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A8C0MWZ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0MX08 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SFL3_CANLF UniProtKB/TrEMBL
  A0A8C0SFY2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P529 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RZ97 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NF33 ENTREZGENE
  A0A8P0NVG6 ENTREZGENE
UniProt Secondary A0A8P0NF33 UniProtKB/TrEMBL
  A0A8P0NVG6 UniProtKB/TrEMBL
VGNC ID VGNC:40215 ENTREZGENE