LTBP2 (latent transforming growth factor beta binding protein 2) - Rat Genome Database

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Gene: LTBP2 (latent transforming growth factor beta binding protein 2) Canis lupus familiaris
Analyze
Symbol: LTBP2
Name: latent transforming growth factor beta binding protein 2
RGD ID: 12100716
Description: ENCODES a protein that exhibits calcium ion binding (inferred); transforming growth factor beta binding (inferred); INVOLVED IN response to alkaloid (ortholog); supramolecular fiber organization (ortholog); ASSOCIATED WITH autosomal dominant isolated ectopia lentis 1 (ortholog); buphthalmos (ortholog); Cardiac Fibrosis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: latent-transforming growth factor beta-binding protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1847,657,618 - 47,758,257 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl847,659,363 - 47,760,938 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha847,340,607 - 47,442,115 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0847,883,641 - 47,985,169 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl847,884,344 - 47,985,139 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1847,554,781 - 47,656,222 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0847,576,054 - 47,677,565 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0847,974,056 - 48,075,556 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:24684544  


Genomics

Comparative Map Data
LTBP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1847,657,618 - 47,758,257 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl847,659,363 - 47,760,938 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha847,340,607 - 47,442,115 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0847,883,641 - 47,985,169 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl847,884,344 - 47,985,139 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1847,554,781 - 47,656,222 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0847,576,054 - 47,677,565 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0847,974,056 - 48,075,556 (-)NCBIUU_Cfam_GSD_1.0
LTBP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381474,498,183 - 74,612,237 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1474,498,183 - 74,612,378 (-)EnsemblGRCh38hg38GRCh38
GRCh371474,964,886 - 75,078,940 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361474,034,639 - 74,148,787 (-)NCBINCBI36Build 36hg18NCBI36
Build 341474,034,639 - 74,148,787NCBI
Celera1455,003,271 - 55,117,403 (-)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1455,133,330 - 55,247,309 (-)NCBIHuRef
CHM1_11474,904,422 - 75,018,171 (-)NCBICHM1_1
T2T-CHM13v2.01468,707,154 - 68,821,330 (-)NCBIT2T-CHM13v2.0
Ltbp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391284,829,986 - 84,923,581 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1284,829,986 - 84,923,306 (-)EnsemblGRCm39 Ensembl
GRCm381284,783,212 - 84,876,558 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1284,783,212 - 84,876,532 (-)EnsemblGRCm38mm10GRCm38
MGSCv371286,124,162 - 86,217,445 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361285,672,960 - 85,766,280 (-)NCBIMGSCv36mm8
Celera1286,239,349 - 86,332,994 (-)NCBICelera
Cytogenetic Map12D1NCBI
cM Map1239.39NCBI
Ltbp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86110,161,029 - 110,261,586 (-)NCBIGRCr8
mRatBN7.26104,429,947 - 104,530,498 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6104,429,947 - 104,526,208 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6104,599,632 - 104,696,047 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06104,898,799 - 104,995,215 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06104,268,141 - 104,364,559 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06108,500,114 - 108,596,653 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6108,500,112 - 108,596,569 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06116,955,322 - 117,049,306 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46108,826,446 - 108,924,746 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16108,829,901 - 108,928,202 (-)NCBI
Celera6102,254,815 - 102,349,980 (-)NCBICelera
Cytogenetic Map6q31NCBI
Ltbp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955523932,347 - 1,003,256 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955523919,220 - 1,005,747 (+)NCBIChiLan1.0ChiLan1.0
LTBP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21575,581,989 - 75,695,595 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11474,798,495 - 74,911,671 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01455,051,325 - 55,164,613 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11473,899,154 - 74,012,203 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1473,901,851 - 74,011,914 (-)Ensemblpanpan1.1panPan2
Ltbp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864028,277,917 - 28,386,253 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364883,685,334 - 3,791,063 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364883,682,044 - 3,790,988 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LTBP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl797,745,396 - 97,852,502 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1797,744,974 - 97,852,848 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27103,589,203 - 103,694,470 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LTBP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12451,707,348 - 51,823,449 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2451,708,479 - 51,823,347 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605339,940,753 - 40,055,605 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ltbp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473427,059,213 - 27,159,654 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473427,058,531 - 27,162,229 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LTBP2
1077 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 6 10 1
Low 4 5 15 6 6 6 4 6 5
Below cutoff 1 2 2 6 8

Sequence


RefSeq Acc Id: ENSCAFT00000026830   ⟹   ENSCAFP00000024933
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl847,659,363 - 47,758,187 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000046233   ⟹   ENSCAFP00000039277
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl847,659,363 - 47,758,187 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000063870   ⟹   ENSCAFP00000050269
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl847,659,363 - 47,758,187 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000069865   ⟹   ENSCAFP00000060368
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl847,659,363 - 47,758,187 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000070409   ⟹   ENSCAFP00000056745
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl847,659,363 - 47,760,938 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000073575   ⟹   ENSCAFP00000060055
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl847,659,363 - 47,758,187 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845025729   ⟹   ENSCAFP00845020274
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl847,884,344 - 47,985,139 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845025837   ⟹   ENSCAFP00845020358
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl847,884,344 - 47,985,139 (-)Ensembl
RefSeq Acc Id: XM_005623660   ⟹   XP_005623717
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1847,657,618 - 47,758,257 (-)NCBI
Dog10K_Boxer_Tasha847,340,607 - 47,442,115 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038484429   ⟹   XP_038340357
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1847,554,781 - 47,656,222 (-)NCBI
RefSeq Acc Id: XM_038545265   ⟹   XP_038401193
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0847,974,056 - 48,075,556 (-)NCBI
RefSeq Acc Id: XM_038609361   ⟹   XP_038465289
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0847,576,054 - 47,677,565 (-)NCBI
RefSeq Acc Id: XM_038674185   ⟹   XP_038530113
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0847,883,641 - 47,985,169 (-)NCBI
RefSeq Acc Id: XP_005623717   ⟸   XM_005623660
- Peptide Label: isoform X1
- UniProtKB: A0A8I3P2C0 (UniProtKB/TrEMBL),   A0A8P0STL2 (UniProtKB/TrEMBL),   A0A8C0NX09 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000056745   ⟸   ENSCAFT00000070409
RefSeq Acc Id: ENSCAFP00000060368   ⟸   ENSCAFT00000069865
RefSeq Acc Id: ENSCAFP00000050269   ⟸   ENSCAFT00000063870
RefSeq Acc Id: ENSCAFP00000060055   ⟸   ENSCAFT00000073575
RefSeq Acc Id: ENSCAFP00000024933   ⟸   ENSCAFT00000026830
RefSeq Acc Id: ENSCAFP00000039277   ⟸   ENSCAFT00000046233
RefSeq Acc Id: XP_038340357   ⟸   XM_038484429
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038465289   ⟸   XM_038609361
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038530113   ⟸   XM_038674185
- Peptide Label: isoform X1
- UniProtKB: A0A8I3P2C0 (UniProtKB/TrEMBL),   A0A8P0STL2 (UniProtKB/TrEMBL),   A0A8C0NX09 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038401193   ⟸   XM_038545265
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NX09 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845020358   ⟸   ENSCAFT00845025837
RefSeq Acc Id: ENSCAFP00845020274   ⟸   ENSCAFT00845025729
Protein Domains
EGF-like   TB

Promoters
RGD ID:13684282
Promoter ID:EPDNEW_C2350
Type:multiple initiation site
Name:LTBP2_1
Description:latent transforming growth factor beta binding protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1847,758,208 - 47,758,268EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016948 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030018892 UniProtKB/TrEMBL
  ENSCAFG00845014362 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000046233.4 UniProtKB/TrEMBL
  ENSCAFT00000063870.2 UniProtKB/TrEMBL
  ENSCAFT00030037301.1 UniProtKB/TrEMBL
  ENSCAFT00845025729 ENTREZGENE
  ENSCAFT00845025729.1 UniProtKB/TrEMBL
  ENSCAFT00845025837.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.290.10 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_CS UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  TB_dom UniProtKB/TrEMBL
  TB_dom_sf UniProtKB/TrEMBL
KEGG Report cfa:490784 UniProtKB/TrEMBL
NCBI Gene LTBP2 ENTREZGENE
PANTHER COMPLEMENT COMPONENT C1Q RECEPTOR UniProtKB/TrEMBL
  EGF-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  THROMBOMODULIN UniProtKB/TrEMBL
Pfam EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  hEGF UniProtKB/TrEMBL
  PF00683 UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  PS51364 UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
  SSF57581 UniProtKB/TrEMBL
UniProt A0A8C0NX09 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P2C0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P2F0_CANLF UniProtKB/TrEMBL
  A0A8P0STL2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0T2X9_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:42857 ENTREZGENE