CCDC89 (coiled-coil domain containing 89) - Rat Genome Database

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Gene: CCDC89 (coiled-coil domain containing 89) Canis lupus familiaris
Analyze
Symbol: CCDC89
Name: coiled-coil domain containing 89
RGD ID: 12098029
Description: ASSOCIATED WITH exudative vitreoretinopathy 1 (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 89
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12113,760,634 - 13,763,602 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2113,760,958 - 13,762,070 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2113,627,506 - 13,630,106 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02113,941,507 - 13,944,107 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2113,941,601 - 13,943,772 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12113,730,192 - 13,732,790 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02113,802,459 - 13,805,059 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02113,855,218 - 13,857,816 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
CCDC89
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12113,760,634 - 13,763,602 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2113,760,958 - 13,762,070 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2113,627,506 - 13,630,106 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02113,941,507 - 13,944,107 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2113,941,601 - 13,943,772 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12113,730,192 - 13,732,790 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02113,802,459 - 13,805,059 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02113,855,218 - 13,857,816 (+)NCBIUU_Cfam_GSD_1.0
CCDC89
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381185,683,848 - 85,686,195 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1185,683,848 - 85,686,195 (-)EnsemblGRCh38hg38GRCh38
GRCh371185,394,891 - 85,397,238 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361185,072,541 - 85,074,968 (-)NCBINCBI36Build 36hg18NCBI36
Celera1182,704,196 - 82,706,623 (-)NCBICelera
Cytogenetic Map11q14.1NCBI
HuRef1181,692,190 - 81,694,617 (-)NCBIHuRef
CHM1_11185,279,700 - 85,282,127 (-)NCBICHM1_1
T2T-CHM13v2.01185,620,532 - 85,622,879 (-)NCBIT2T-CHM13v2.0
Ccdc89
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39790,075,520 - 90,077,872 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl790,075,785 - 90,077,877 (+)EnsemblGRCm39 Ensembl
GRCm38790,426,312 - 90,428,664 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl790,426,577 - 90,428,669 (+)EnsemblGRCm38mm10GRCm38
MGSCv37797,574,822 - 97,577,174 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36790,301,504 - 90,303,856 (+)NCBIMGSCv36mm8
Celera787,753,586 - 87,755,938 (+)NCBICelera
Cytogenetic Map7E1NCBI
cM Map750.58NCBI
Ccdc89
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81153,798,786 - 153,800,048 (+)NCBIGRCr8
mRatBN7.21144,386,252 - 144,387,514 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1144,386,158 - 144,389,850 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1152,309,080 - 152,310,342 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01159,487,316 - 159,488,578 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01152,361,235 - 152,362,497 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01154,606,461 - 154,607,723 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1154,606,490 - 154,607,602 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01160,870,436 - 160,871,698 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41147,091,688 - 147,092,950 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11147,169,971 - 147,171,333 (+)NCBI
Celera1142,606,685 - 142,607,947 (+)NCBICelera
Cytogenetic Map1q32NCBI
Ccdc89
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554147,198,795 - 7,199,913 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554147,197,533 - 7,200,234 (+)NCBIChiLan1.0ChiLan1.0
CCDC89
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2986,606,062 - 86,614,080 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11187,657,137 - 87,659,883 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01180,740,357 - 80,741,833 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11184,348,915 - 84,350,391 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1184,349,126 - 84,350,250 (-)Ensemblpanpan1.1panPan2
Ccdc89
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494771,969,295 - 71,971,183 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649813,569,564 - 13,571,035 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649813,569,401 - 13,570,751 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC89
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl919,603,230 - 19,609,004 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1919,606,282 - 19,611,544 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2921,877,776 - 21,879,868 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC89
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1176,927,354 - 76,929,973 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl176,927,842 - 76,928,966 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604348,793,196 - 48,794,984 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc89
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248454,243,806 - 4,245,722 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CCDC89
25 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 7 2 8 5
Low 5 5 12 3 6 3 6 6 10 5 6
Below cutoff 3 3 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000007274   ⟹   ENSCAFP00000032782
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2113,760,958 - 13,762,070 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845014903   ⟹   ENSCAFP00845011554
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2113,941,601 - 13,943,772 (+)Ensembl
RefSeq Acc Id: XM_038429886   ⟹   XP_038285814
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02113,941,507 - 13,944,107 (+)NCBI
RefSeq Acc Id: XM_038505257   ⟹   XP_038361185
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12113,730,192 - 13,732,790 (+)NCBI
RefSeq Acc Id: XM_038568419   ⟹   XP_038424347
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02113,855,218 - 13,857,816 (+)NCBI
RefSeq Acc Id: XM_038632566   ⟹   XP_038488494
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02113,802,459 - 13,805,059 (+)NCBI
RefSeq Acc Id: XM_533988   ⟹   XP_533988
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12113,760,634 - 13,763,602 (+)NCBI
Dog10K_Boxer_Tasha2113,627,506 - 13,630,106 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_533988   ⟸   XM_533988
- UniProtKB: A0A8C0KUX2 (UniProtKB/TrEMBL),   A0A8C0MPW4 (UniProtKB/TrEMBL),   A0A8I3N7R4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000032782   ⟸   ENSCAFT00000007274
RefSeq Acc Id: XP_038361185   ⟸   XM_038505257
RefSeq Acc Id: XP_038488494   ⟸   XM_038632566
RefSeq Acc Id: XP_038285814   ⟸   XM_038429886
- UniProtKB: A0A8C0KUX2 (UniProtKB/TrEMBL),   A0A8C0MPW4 (UniProtKB/TrEMBL),   A0A8I3N7R4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038424347   ⟸   XM_038568419
- UniProtKB: A0A8C0Z571 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845011554   ⟸   ENSCAFT00845014903


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000004512 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030008506 UniProtKB/TrEMBL
  ENSCAFG00040023133 UniProtKB/TrEMBL
  ENSCAFG00845008484 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000007274.4 UniProtKB/TrEMBL
  ENSCAFT00030015608.1 UniProtKB/TrEMBL
  ENSCAFT00040042979.1 UniProtKB/TrEMBL
  ENSCAFT00845014903 ENTREZGENE
  ENSCAFT00845014903.1 UniProtKB/TrEMBL
InterPro CCDC89-like UniProtKB/TrEMBL
KEGG Report cfa:476782 UniProtKB/TrEMBL
NCBI Gene CCDC89 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 89 UniProtKB/TrEMBL
  PTHR34768 UniProtKB/TrEMBL
UniProt A0A8C0KUX2 ENTREZGENE
  A0A8C0MPW4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Z571 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N7R4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38870 ENTREZGENE