OR52N4F (olfactory receptor family 52 subfamily N member 4F) - Rat Genome Database

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Gene: OR52N4F (olfactory receptor family 52 subfamily N member 4F) Canis lupus familiaris
Analyze
Symbol: OR52N4F (Ensembl: cOR52N8)
Name: olfactory receptor family 52 subfamily N member 4F
RGD ID: 12097126
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cOR52N8; cOR52N8 olfactory receptor family 52 subfamily N-like; olfactory receptor 52N4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Pig
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12128,823,762 - 28,824,727 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2128,823,735 - 28,824,727 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2128,585,100 - 28,586,065 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02129,643,264 - 29,644,229 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2129,643,237 - 29,644,229 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12128,966,332 - 28,967,297 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02129,156,192 - 29,157,157 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02129,317,014 - 29,317,979 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14962662   PMID:22301074  


Genomics

Comparative Map Data
OR52N4F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12128,823,762 - 28,824,727 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2128,823,735 - 28,824,727 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2128,585,100 - 28,586,065 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02129,643,264 - 29,644,229 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2129,643,237 - 29,644,229 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12128,966,332 - 28,967,297 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02129,156,192 - 29,157,157 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02129,317,014 - 29,317,979 (+)NCBIUU_Cfam_GSD_1.0
OR52N1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38115,786,471 - 5,791,265 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl115,786,471 - 5,791,265 (-)EnsemblGRCh38hg38GRCh38
GRCh37115,807,701 - 5,812,495 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36115,765,660 - 5,766,622 (-)NCBINCBI36Build 36hg18NCBI36
Build 34115,765,659 - 5,766,622NCBI
Celera115,928,113 - 5,929,075 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef115,468,476 - 5,469,438 (-)NCBIHuRef
CHM1_1115,808,015 - 5,808,977 (-)NCBICHM1_1
T2T-CHM13v2.0115,844,276 - 5,849,065 (-)NCBIT2T-CHM13v2.0
Or52n1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397104,382,592 - 104,383,557 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7104,382,592 - 104,383,557 (-)EnsemblGRCm39 Ensembl
GRCm387104,733,385 - 104,734,350 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7104,733,385 - 104,734,362 (-)EnsemblGRCm38mm10GRCm38
MGSCv377111,881,899 - 111,882,864 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367104,607,263 - 104,641,877 (-)NCBIMGSCv36mm8
Celera7105,006,958 - 105,007,923 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map755.69NCBI
Or52n1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81168,540,089 - 168,541,054 (-)NCBIGRCr8
mRatBN7.21159,128,222 - 159,129,187 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1159,128,222 - 159,129,187 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1167,136,003 - 167,136,968 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01174,316,008 - 174,316,973 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01167,195,110 - 167,196,075 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_5.01175,996,608 - 175,997,573 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41162,510,151 - 162,511,116NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11162,605,627 - 162,606,593NCBI
Celera1157,111,778 - 157,112,743 (-)NCBICelera
Cytogenetic Map1q32NCBI
LOC100986112
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v298,224,949 - 8,229,747 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1118,184,184 - 8,185,147 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0115,922,288 - 5,923,306 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1115,603,635 - 5,604,597 (-)NCBIpanpan1.1PanPan1.1panPan2
LOC100515742
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.193,675,410 - 3,676,375 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.294,426,425 - 4,427,390 (+)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in OR52N4F
14 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000010185   ⟹   ENSCAFP00000009448
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2128,823,735 - 28,824,727 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845038941   ⟹   ENSCAFP00845030495
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2129,643,237 - 29,644,229 (+)Ensembl
RefSeq Acc Id: XM_038429593   ⟹   XP_038285521
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02129,643,264 - 29,644,229 (+)NCBI
RefSeq Acc Id: XM_038506173   ⟹   XP_038362101
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12128,966,332 - 28,967,297 (+)NCBI
RefSeq Acc Id: XM_038568175   ⟹   XP_038424103
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02129,317,014 - 29,317,979 (+)NCBI
RefSeq Acc Id: XM_038632274   ⟹   XP_038488202
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02129,156,192 - 29,157,157 (+)NCBI
RefSeq Acc Id: XM_542411   ⟹   XP_542411
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12128,823,762 - 28,824,727 (+)NCBI
Dog10K_Boxer_Tasha2128,585,100 - 28,586,065 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_542411   ⟸   XM_542411
- UniProtKB: A0A8C0K637 (UniProtKB/TrEMBL),   A0A8C0N0K7 (UniProtKB/TrEMBL),   A0A8I3PF04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000009448   ⟸   ENSCAFT00000010185
RefSeq Acc Id: XP_038362101   ⟸   XM_038506173
RefSeq Acc Id: XP_038488202   ⟸   XM_038632274
RefSeq Acc Id: XP_038285521   ⟸   XM_038429593
- UniProtKB: A0A8C0K637 (UniProtKB/TrEMBL),   A0A8C0N0K7 (UniProtKB/TrEMBL),   A0A8I3PF04 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038424103   ⟸   XM_038568175
- UniProtKB: A0A8C0K637 (UniProtKB/TrEMBL),   A0A8C0N0K7 (UniProtKB/TrEMBL),   A0A8I3PF04 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845030495   ⟸   ENSCAFT00845038941
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000045475 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030010737 UniProtKB/TrEMBL
  ENSCAFG00040017767 UniProtKB/TrEMBL
  ENSCAFG00845022087 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000010185.3 UniProtKB/TrEMBL
  ENSCAFT00030019847.1 UniProtKB/TrEMBL
  ENSCAFT00040032816.1 UniProtKB/TrEMBL
  ENSCAFT00845038941 ENTREZGENE
  ENSCAFT00845038941.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene cOR52N8 ENTREZGENE
PANTHER OLFACTORY RECEPTOR 52N4 UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 56B1-RELATED UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C0K637 ENTREZGENE
  A0A8C0N0K7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PF04 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:96658 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-04 OR52N4F  olfactory receptor family 52 subfamily N member 4F  cOR52N8  cOR52N8 olfactory receptor family 52 subfamily N-like  Symbol and/or name change 5135510 APPROVED