SGO2 (shugoshin 2) - Rat Genome Database

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Gene: SGO2 (shugoshin 2) Canis lupus familiaris
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Symbol: SGO2
Name: shugoshin 2
RGD ID: 12094531
Description: INVOLVED IN female meiotic nuclear division (ortholog); male meiotic nuclear division (ortholog); meiotic sister chromatid cohesion involved in meiosis I (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); Pulmonary Arterial Hypertension (ortholog); FOUND IN chromosome, centromeric region (ortholog); condensed chromosome, centromeric region (ortholog); kinetochore (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: shugoshin 2; shugoshin-like 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1379,611,843 - 9,653,169 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl379,611,939 - 9,767,044 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3710,498,290 - 10,539,605 (+)NCBI
ROS_Cfam_1.0379,511,109 - 9,552,420 (+)NCBI
UMICH_Zoey_3.1379,499,086 - 9,540,357 (+)NCBI
UNSW_CanFamBas_1.0379,471,294 - 9,512,536 (+)NCBI
UU_Cfam_GSD_1.0379,469,608 - 9,511,797 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
SGO2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1379,611,843 - 9,653,169 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl379,611,939 - 9,767,044 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3710,498,290 - 10,539,605 (+)NCBI
ROS_Cfam_1.0379,511,109 - 9,552,420 (+)NCBI
UMICH_Zoey_3.1379,499,086 - 9,540,357 (+)NCBI
UNSW_CanFamBas_1.0379,471,294 - 9,512,536 (+)NCBI
UU_Cfam_GSD_1.0379,469,608 - 9,511,797 (+)NCBI
SGO2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2200,510,008 - 200,584,096 (+)EnsemblGRCh38hg38GRCh38
GRCh382200,510,198 - 200,584,096 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372201,390,865 - 201,448,819 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362201,099,185 - 201,156,750 (+)NCBINCBI36hg18NCBI36
Build 342201,216,462 - 201,273,720NCBI
Celera2195,145,716 - 195,203,700 (+)NCBI
Cytogenetic Map2q33.1NCBI
HuRef2193,242,173 - 193,300,154 (+)NCBIHuRef
CHM1_12201,396,844 - 201,454,804 (+)NCBICHM1_1
Sgo2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,024,499 - 58,065,436 (+)NCBIGRCm39mm39
GRCm39 Ensembl158,035,130 - 58,065,058 (+)Ensembl
GRCm38157,985,340 - 58,026,277 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl157,995,971 - 58,025,899 (+)EnsemblGRCm38mm10GRCm38
MGSCv37158,042,184 - 58,083,121 (+)NCBIGRCm37mm9NCBIm37
MGSCv36157,940,612 - 57,970,443 (+)NCBImm8
Celera158,499,153 - 58,539,977 (+)NCBICelera
Cytogenetic Map1C1.3NCBI
cM Map128.86NCBI
Sgo2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2959,548,605 - 59,573,229 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl959,548,683 - 59,573,229 (+)Ensembl
Rnor_6.0964,898,380 - 64,923,023 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl964,898,459 - 64,923,012 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0964,695,921 - 64,720,561 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4956,664,634 - 56,681,534 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1956,809,175 - 56,834,098 (+)NCBI
Celera956,996,167 - 57,018,671 (+)NCBICelera
Cytogenetic Map9q31NCBI
Sgo2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955403879,354 - 905,605 (-)NCBIChiLan1.0ChiLan1.0
SGO2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B205,943,126 - 205,994,531 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B205,943,783 - 205,994,197 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B87,779,677 - 87,837,285 (+)NCBIMhudiblu_PPA_v0panPan3
Sgo2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303157,649,125 - 157,686,308 (+)NCBI
SpeTri2.0NW_004936825350,390 - 373,005 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SGO2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15104,099,384 - 104,152,527 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115104,099,378 - 104,150,723 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215115,371,377 - 115,424,516 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SGO2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11086,019,474 - 86,075,905 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1086,025,030 - 86,067,458 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040113,364,364 - 113,418,131 (-)NCBIVero_WHO_p1.0
Sgo2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624889540,680 - 563,110 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 8
Low 5 2 18 6 6 6 6 12 10 6
Below cutoff 3 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000017602   ⟹   ENSCAFP00000016298
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl379,611,939 - 9,767,044 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000046092   ⟹   ENSCAFP00000043035
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl379,611,939 - 9,651,626 (+)Ensembl
RefSeq Acc Id: XM_014111121   ⟹   XP_013966596
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1379,611,843 - 9,653,169 (+)NCBI
Dog10K_Boxer_Tasha3710,498,290 - 10,539,605 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014111122   ⟹   XP_013966597
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1379,612,843 - 9,651,356 (+)NCBI
Dog10K_Boxer_Tasha3710,499,274 - 10,538,062 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038447543   ⟹   XP_038303471
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0379,511,109 - 9,552,420 (+)NCBI
RefSeq Acc Id: XM_038447544   ⟹   XP_038303472
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0379,512,082 - 9,550,877 (+)NCBI
RefSeq Acc Id: XM_038521598   ⟹   XP_038377526
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1379,499,086 - 9,540,357 (+)NCBI
RefSeq Acc Id: XM_038585296   ⟹   XP_038441224
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0379,469,608 - 9,511,797 (+)NCBI
RefSeq Acc Id: XM_038585297   ⟹   XP_038441225
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0379,470,582 - 9,510,254 (+)NCBI
RefSeq Acc Id: XM_038649699   ⟹   XP_038505627
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0379,471,294 - 9,512,536 (+)NCBI
RefSeq Acc Id: XM_038649700   ⟹   XP_038505628
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0379,472,274 - 9,510,993 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_013966596   ⟸   XM_014111121
- Peptide Label: isoform X1
- UniProtKB: J9PB57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013966597   ⟸   XM_014111122
- Peptide Label: isoform X1
- UniProtKB: J9PB57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000016298   ⟸   ENSCAFT00000017602
RefSeq Acc Id: ENSCAFP00000043035   ⟸   ENSCAFT00000046092
RefSeq Acc Id: XP_038377526   ⟸   XM_038521598
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038505627   ⟸   XM_038649699
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038505628   ⟸   XM_038649700
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038303471   ⟸   XM_038447543
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038303472   ⟸   XM_038447544
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038441224   ⟸   XM_038585296
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038441225   ⟸   XM_038585297
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011065 Ensembl
NCBI Gene SGO2 ENTREZGENE
UniProt J9PB57 ENTREZGENE
VGNC ID VGNC:46101 ENTREZGENE