SLC38A3 (solute carrier family 38 member 3) - Rat Genome Database

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Gene: SLC38A3 (solute carrier family 38 member 3) Canis lupus familiaris
Analyze
Symbol: SLC38A3
Name: solute carrier family 38 member 3
RGD ID: 12094290
Description: ENCODES a protein that exhibits L-alanine transmembrane transporter activity (inferred); INVOLVED IN brain development (ortholog); cellular response to potassium ion starvation (ortholog); female pregnancy (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); Dwarfism (ortholog); Endotoxemia (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); integral component of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: sodium-coupled neutral amino acid transporter 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,108,387 - 39,122,526 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,109,211 - 39,114,849 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2039,029,425 - 39,043,601 (-)NCBI
ROS_Cfam_1.02039,464,652 - 39,478,831 (-)NCBI
UMICH_Zoey_3.12038,832,227 - 38,846,403 (-)NCBI
UNSW_CanFamBas_1.02039,236,334 - 39,250,516 (-)NCBI
UU_Cfam_GSD_1.02039,515,831 - 39,530,233 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
SLC38A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,108,387 - 39,122,526 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,109,211 - 39,114,849 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2039,029,425 - 39,043,601 (-)NCBI
ROS_Cfam_1.02039,464,652 - 39,478,831 (-)NCBI
UMICH_Zoey_3.12038,832,227 - 38,846,403 (-)NCBI
UNSW_CanFamBas_1.02039,236,334 - 39,250,516 (-)NCBI
UU_Cfam_GSD_1.02039,515,831 - 39,530,233 (-)NCBI
SLC38A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl350,205,246 - 50,221,486 (+)EnsemblGRCh38hg38GRCh38
GRCh38350,205,268 - 50,221,486 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37350,242,704 - 50,258,918 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36350,217,696 - 50,233,410 (+)NCBINCBI36hg18NCBI36
Build 34350,217,708 - 50,233,406NCBI
Celera350,215,521 - 50,231,235 (+)NCBI
Cytogenetic Map3p21.31NCBI
HuRef350,298,378 - 50,314,094 (+)NCBIHuRef
CHM1_1350,194,967 - 50,210,681 (+)NCBICHM1_1
Slc38a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,528,353 - 107,546,167 (-)NCBIGRCm39mm39
GRCm39 Ensembl9107,527,833 - 107,546,729 (-)Ensembl
GRCm389107,651,154 - 107,668,968 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,650,634 - 107,669,530 (-)EnsemblGRCm38mm10GRCm38
MGSCv379107,553,486 - 107,569,705 (-)NCBIGRCm37mm9NCBIm37
MGSCv369107,509,256 - 107,525,475 (-)NCBImm8
Celera9107,256,617 - 107,273,287 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map958.69NCBI
Slc38a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28108,323,889 - 108,339,959 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl8116,406,241 - 116,422,366 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08116,406,258 - 116,423,752 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08115,761,368 - 115,779,081 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48112,898,405 - 112,914,444 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18112,917,859 - 112,933,899 (-)NCBI
Celera8107,630,163 - 107,646,202 (-)NCBICelera
Cytogenetic Map8q32NCBI
Slc38a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555322,023,694 - 2,050,708 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555322,023,694 - 2,046,556 (+)NCBIChiLan1.0ChiLan1.0
SLC38A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1351,367,939 - 51,383,657 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl351,367,939 - 51,383,657 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0350,133,631 - 50,149,394 (+)NCBIMhudiblu_PPA_v0panPan3
Slc38a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,989,382 - 65,005,427 (+)NCBI
SpeTri2.0NW_0049365291,749,919 - 1,765,885 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC38A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,683,191 - 32,704,535 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,683,131 - 32,699,803 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,861,884 - 35,878,403 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC38A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12211,591,680 - 11,606,291 (+)NCBI
ChlSab1.1 Ensembl2211,591,717 - 11,606,355 (+)Ensembl
Vero_WHO_p1.0NW_023666041155,378,802 - 155,395,004 (-)NCBI
Slc38a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247304,078,084 - 4,092,330 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 8 6 6 1
Low 3 7 2 5 5 7 3
Below cutoff 5 2 7 4 1 5 8 7 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005632515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022406708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022406709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038427700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038427701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038503386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038503387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038566387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038566388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038630537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038630538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_533820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000017115   ⟹   ENSCAFP00000015837
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2039,109,211 - 39,114,849 (-)Ensembl
RefSeq Acc Id: XM_005632515   ⟹   XP_005632572
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12039,108,387 - 39,121,360 (-)NCBI
Dog10K_Boxer_Tasha2039,029,425 - 39,042,630 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022406708   ⟹   XP_022262416
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12039,108,387 - 39,120,585 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022406709   ⟹   XP_022262417
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12039,108,387 - 39,114,878 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038427700   ⟹   XP_038283628
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02039,464,652 - 39,478,831 (-)NCBI
RefSeq Acc Id: XM_038427701   ⟹   XP_038283629
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02039,464,652 - 39,477,860 (-)NCBI
RefSeq Acc Id: XM_038503386   ⟹   XP_038359314
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12038,832,227 - 38,846,403 (-)NCBI
RefSeq Acc Id: XM_038503387   ⟹   XP_038359315
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12038,832,227 - 38,845,432 (-)NCBI
RefSeq Acc Id: XM_038566387   ⟹   XP_038422315
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02039,515,831 - 39,530,233 (-)NCBI
RefSeq Acc Id: XM_038566388   ⟹   XP_038422316
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02039,515,831 - 39,529,262 (-)NCBI
RefSeq Acc Id: XM_038630537   ⟹   XP_038486465
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02039,236,334 - 39,250,516 (-)NCBI
RefSeq Acc Id: XM_038630538   ⟹   XP_038486466
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02039,236,334 - 39,249,545 (-)NCBI
RefSeq Acc Id: XM_533820   ⟹   XP_533820
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12039,108,387 - 39,122,526 (-)NCBI
Dog10K_Boxer_Tasha2039,029,425 - 39,043,601 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_533820   ⟸   XM_533820
- UniProtKB: E2R7Z7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005632572   ⟸   XM_005632515
- UniProtKB: E2R7Z7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022262416   ⟸   XM_022406708
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_022262417   ⟸   XM_022406709
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCAFP00000015837   ⟸   ENSCAFT00000017115
RefSeq Acc Id: XP_038359314   ⟸   XM_038503386
RefSeq Acc Id: XP_038359315   ⟸   XM_038503387
RefSeq Acc Id: XP_038486465   ⟸   XM_038630537
RefSeq Acc Id: XP_038486466   ⟸   XM_038630538
RefSeq Acc Id: XP_038283628   ⟸   XM_038427700
RefSeq Acc Id: XP_038283629   ⟸   XM_038427701
RefSeq Acc Id: XP_038422315   ⟸   XM_038566387
RefSeq Acc Id: XP_038422316   ⟸   XM_038566388
Protein Domains
Aa_trans

Promoters
RGD ID:13686865
Promoter ID:EPDNEW_C4934
Type:multiple initiation site
Name:SLC38A3_1
Description:solute carrier family 38 member 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12039,122,488 - 39,122,548EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010754 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000015837 ENTREZGENE
NCBI Gene SLC38A3 ENTREZGENE
UniProt E2R7Z7 ENTREZGENE
VGNC ID VGNC:46394 ENTREZGENE