CCNG1 (cyclin G1) - Rat Genome Database

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Gene: CCNG1 (cyclin G1) Canis lupus familiaris
Analyze
Symbol: CCNG1
Name: cyclin G1
RGD ID: 12092795
Description: ENCODES a protein that exhibits cyclin-dependent protein serine/threonine kinase regulator activity (inferred); INVOLVED IN mitotic G2 DNA damage checkpoint signaling (ortholog); negative regulation of apoptotic process (ortholog); response to gravity (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); breast adenocarcinoma (ortholog); breast cancer (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog); perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclin-G1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1447,800,697 - 47,808,259 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl447,801,575 - 47,808,211 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha447,693,783 - 47,701,354 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0448,231,625 - 48,239,215 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl448,231,625 - 48,238,937 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1448,014,780 - 48,022,368 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0448,173,025 - 48,180,607 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0448,692,928 - 48,700,530 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CCNG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1447,800,697 - 47,808,259 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl447,801,575 - 47,808,211 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha447,693,783 - 47,701,354 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0448,231,625 - 48,239,215 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl448,231,625 - 48,238,937 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1448,014,780 - 48,022,368 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0448,173,025 - 48,180,607 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0448,692,928 - 48,700,530 (-)NCBIUU_Cfam_GSD_1.0
CCNG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385163,437,571 - 163,457,640 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5163,437,569 - 163,446,151 (+)EnsemblGRCh38hg38GRCh38
GRCh375162,864,577 - 162,875,205 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365162,797,155 - 162,804,600 (+)NCBINCBI36Build 36hg18NCBI36
Build 345162,797,154 - 162,804,598NCBI
Celera5158,898,684 - 158,906,130 (+)NCBICelera
Cytogenetic Map5q34NCBI
HuRef5157,964,260 - 157,971,705 (+)NCBIHuRef
CHM1_15162,297,037 - 162,304,482 (+)NCBICHM1_1
T2T-CHM13v2.05163,972,739 - 163,983,375 (+)NCBIT2T-CHM13v2.0
Ccng1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391140,639,379 - 40,646,044 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1140,639,379 - 40,646,138 (-)EnsemblGRCm39 Ensembl
GRCm381140,748,552 - 40,755,309 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1140,748,552 - 40,755,311 (-)EnsemblGRCm38mm10GRCm38
MGSCv371140,562,054 - 40,568,788 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361140,591,975 - 40,598,709 (-)NCBIMGSCv36mm8
Celera1144,600,600 - 44,607,334 (-)NCBICelera
Cytogenetic Map11A5NCBI
cM Map1124.42NCBI
Ccng1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81025,678,503 - 25,684,876 (-)NCBIGRCr8
mRatBN7.21025,176,231 - 25,182,604 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1025,176,234 - 25,181,641 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1029,938,596 - 29,945,089 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01029,427,123 - 29,433,616 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01024,913,784 - 24,920,277 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01025,903,925 - 25,910,298 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1025,903,911 - 25,910,325 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01025,754,109 - 25,760,482 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41025,776,380 - 25,782,754 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11025,777,429 - 25,783,775 (-)NCBI
Celera1024,735,527 - 24,741,900 (-)NCBICelera
RH 3.4 Map10255.21RGD
Cytogenetic Map10q12NCBI
Ccng1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540816,846,050 - 16,850,365 (+)NCBIChiLan1.0ChiLan1.0
CCNG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24158,610,583 - 158,624,484 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15156,750,429 - 156,757,885 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05158,814,563 - 158,822,019 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15165,591,279 - 165,598,728 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5165,592,971 - 165,598,728 (+)Ensemblpanpan1.1panPan2
Ccng1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213102,164,944 - 102,171,907 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936515614,290 - 619,963 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936515614,287 - 621,213 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1660,349,258 - 60,356,738 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11660,349,255 - 60,356,737 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21665,189,603 - 65,197,085 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103244924
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12365,709,759 - 65,716,913 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2365,709,786 - 65,714,711 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660971,066,729 - 1,073,889 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccng1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473326,367,200 - 26,376,664 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473326,366,448 - 26,378,062 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CCNG1
109 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000027251   ⟹   ENSCAFP00000025345
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl447,801,575 - 47,806,942 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000074067   ⟹   ENSCAFP00000061685
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl447,801,910 - 47,808,211 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845000876   ⟹   ENSCAFP00845000660
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl448,231,625 - 48,237,882 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845000885   ⟹   ENSCAFP00845000665
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl448,231,626 - 48,238,937 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845000889   ⟹   ENSCAFP00845000667
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl448,232,838 - 48,238,937 (-)Ensembl
RefSeq Acc Id: XM_022417727   ⟹   XP_022273435
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1447,800,697 - 47,808,259 (-)NCBI
Dog10K_Boxer_Tasha447,693,783 - 47,701,354 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038473753   ⟹   XP_038329681
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1448,014,780 - 48,022,367 (-)NCBI
RefSeq Acc Id: XM_038473754   ⟹   XP_038329682
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1448,014,780 - 48,022,368 (-)NCBI
RefSeq Acc Id: XM_038534833   ⟹   XP_038390761
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0448,692,928 - 48,700,529 (-)NCBI
RefSeq Acc Id: XM_038534834   ⟹   XP_038390762
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0448,692,928 - 48,700,530 (-)NCBI
RefSeq Acc Id: XM_038599134   ⟹   XP_038455062
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0448,173,025 - 48,180,606 (-)NCBI
RefSeq Acc Id: XM_038599135   ⟹   XP_038455063
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0448,173,025 - 48,180,607 (-)NCBI
RefSeq Acc Id: XM_038663439   ⟹   XP_038519367
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0448,231,625 - 48,239,214 (-)NCBI
RefSeq Acc Id: XM_038663440   ⟹   XP_038519368
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0448,231,625 - 48,239,215 (-)NCBI
RefSeq Acc Id: XM_536441   ⟹   XP_536441
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1447,800,697 - 47,808,258 (-)NCBI
Dog10K_Boxer_Tasha447,693,783 - 47,701,353 (-)NCBI
Sequence:
RefSeq Acc Id: XP_536441   ⟸   XM_536441
- UniProtKB: A0A8C0NI67 (UniProtKB/TrEMBL),   A0A8I3RQW5 (UniProtKB/TrEMBL),   A0A8C0JMM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022273435   ⟸   XM_022417727
- UniProtKB: A0A8C0NI67 (UniProtKB/TrEMBL),   A0A8I3RQW5 (UniProtKB/TrEMBL),   A0A8C0JMM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000061685   ⟸   ENSCAFT00000074067
RefSeq Acc Id: ENSCAFP00000025345   ⟸   ENSCAFT00000027251
RefSeq Acc Id: XP_038329682   ⟸   XM_038473754
RefSeq Acc Id: XP_038329681   ⟸   XM_038473753
RefSeq Acc Id: XP_038455063   ⟸   XM_038599135
RefSeq Acc Id: XP_038455062   ⟸   XM_038599134
RefSeq Acc Id: XP_038519368   ⟸   XM_038663440
- UniProtKB: A0A8C0NI67 (UniProtKB/TrEMBL),   A0A8I3RQW5 (UniProtKB/TrEMBL),   A0A8C0JMM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519367   ⟸   XM_038663439
- UniProtKB: A0A8C0NI67 (UniProtKB/TrEMBL),   A0A8I3RQW5 (UniProtKB/TrEMBL),   A0A8C0JMM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390762   ⟸   XM_038534834
- UniProtKB: A0A8C0JMM0 (UniProtKB/TrEMBL),   A0A8C0NI67 (UniProtKB/TrEMBL),   A0A8I3RQW5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390761   ⟸   XM_038534833
- UniProtKB: A0A8C0JMM0 (UniProtKB/TrEMBL),   A0A8C0NI67 (UniProtKB/TrEMBL),   A0A8I3RQW5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845000667   ⟸   ENSCAFT00845000889
RefSeq Acc Id: ENSCAFP00845000665   ⟸   ENSCAFT00845000885
RefSeq Acc Id: ENSCAFP00845000660   ⟸   ENSCAFT00845000876
Protein Domains
Cyclin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000017207 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030015462 UniProtKB/TrEMBL
  ENSCAFG00040002729 UniProtKB/TrEMBL
  ENSCAFG00845000531 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000027251.5 UniProtKB/TrEMBL
  ENSCAFT00000074067.2 UniProtKB/TrEMBL
  ENSCAFT00000096605.1 UniProtKB/TrEMBL
  ENSCAFT00030028628.1 UniProtKB/TrEMBL
  ENSCAFT00030028722.1 UniProtKB/TrEMBL
  ENSCAFT00040005198.1 UniProtKB/TrEMBL
  ENSCAFT00040005227.1 UniProtKB/TrEMBL
  ENSCAFT00845000876 ENTREZGENE
  ENSCAFT00845000876.1 UniProtKB/TrEMBL
  ENSCAFT00845000885.1 UniProtKB/TrEMBL
  ENSCAFT00845000889.1 UniProtKB/TrEMBL
Gene3D-CATH Cyclin-like UniProtKB/TrEMBL
InterPro Cyclin UniProtKB/TrEMBL
  Cyclin-like UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
NCBI Gene CCNG1 ENTREZGENE
PANTHER PTHR10177 UniProtKB/TrEMBL
  PTHR10177:SF59 UniProtKB/TrEMBL
Pfam Cyclin_N UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/TrEMBL
UniProt A0A8C0JMM0 ENTREZGENE
  A0A8C0NDE1_CANLF UniProtKB/TrEMBL
  A0A8C0NI67 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MB01_CANLF UniProtKB/TrEMBL
  A0A8I3MI47_CANLF UniProtKB/TrEMBL
  A0A8I3RQW5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PK67_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:38900 ENTREZGENE