ARPC1A (actin related protein 2/3 complex subunit 1A) - Rat Genome Database

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Gene: ARPC1A (actin related protein 2/3 complex subunit 1A) Canis lupus familiaris
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Symbol: ARPC1A
Name: actin related protein 2/3 complex subunit 1A
RGD ID: 12091955
Description: ENCODES a protein that exhibits actin binding (inferred); INVOLVED IN Arp2/3 complex-mediated actin nucleation (inferred); regulation of actin filament polymerization (inferred); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; ASSOCIATED WITH pancreatic cancer (ortholog); pleomorphic xanthoastrocytoma (ortholog); schizophrenia (ortholog); FOUND IN actin cytoskeleton (inferred); Arp2/3 protein complex (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: actin-related protein 2/3 complex subunit 1A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1610,212,203 - 10,245,112 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl610,212,494 - 10,245,073 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha611,838,931 - 11,871,811 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0610,212,409 - 10,245,315 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl610,212,412 - 10,245,312 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1610,082,332 - 10,115,224 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0610,060,836 - 10,093,722 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0610,294,657 - 10,327,563 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
ARPC1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1610,212,203 - 10,245,112 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl610,212,494 - 10,245,073 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha611,838,931 - 11,871,811 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0610,212,409 - 10,245,315 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl610,212,412 - 10,245,312 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1610,082,332 - 10,115,224 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0610,060,836 - 10,093,722 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0610,294,657 - 10,327,563 (-)NCBIUU_Cfam_GSD_1.0
ARPC1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38799,325,898 - 99,366,262 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl799,325,898 - 99,366,262 (+)EnsemblGRCh38hg38GRCh38
GRCh37798,923,521 - 98,963,885 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36798,761,446 - 98,801,821 (+)NCBINCBI36Build 36hg18NCBI36
Build 34798,568,160 - 98,608,538NCBI
Celera793,657,670 - 93,698,057 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef793,559,314 - 93,599,623 (+)NCBIHuRef
CHM1_1798,853,571 - 98,893,965 (+)NCBICHM1_1
T2T-CHM13v2.07100,564,792 - 100,605,160 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2798,283,446 - 98,323,834 (+)NCBI
Arpc1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395145,020,679 - 145,045,566 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5145,020,640 - 145,045,571 (+)EnsemblGRCm39 Ensembl
GRCm385145,083,869 - 145,108,756 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5145,083,830 - 145,108,761 (+)EnsemblGRCm38mm10GRCm38
MGSCv375145,844,738 - 145,869,625 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365145,337,396 - 145,362,283 (+)NCBIMGSCv36mm8
Celera5142,075,658 - 142,100,687 (+)NCBICelera
Cytogenetic Map5G2NCBI
Arpc1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2129,502,496 - 9,525,304 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,502,501 - 9,525,330 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,307,262 - 10,330,326 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01210,930,465 - 10,953,529 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0129,953,893 - 9,976,958 (-)NCBIRnor_WKY
Rnor_6.01211,272,609 - 11,294,084 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1211,272,609 - 11,294,058 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01213,341,711 - 13,363,473 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.1129,846,583 - 9,863,837 (-)NCBI
Celera1211,307,305 - 11,329,866 (-)NCBICelera
Cytogenetic Map12p11NCBI
Arpc1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546015,023,221 - 15,051,115 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546015,022,663 - 15,050,955 (+)NCBIChiLan1.0ChiLan1.0
ARPC1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17104,801,399 - 104,841,590 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7104,801,399 - 104,841,590 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0791,299,559 - 91,339,729 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
Arpc1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344138,300,216 - 138,334,198 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367501,611,082 - 1,645,045 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARPC1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl36,197,760 - 6,324,524 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.136,296,257 - 6,324,526 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.236,434,509 - 6,462,700 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARPC1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12813,793,196 - 13,833,254 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2813,764,945 - 13,825,815 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660702,470,717 - 2,509,959 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arpc1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474032,771,885 - 32,805,516 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474032,771,870 - 32,801,047 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000023968   ⟹   ENSCAFP00000022252
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl610,212,494 - 10,245,073 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000036371   ⟹   ENSCAFP00000031738
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl610,213,352 - 10,238,462 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845006438   ⟹   ENSCAFP00845005122
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl610,212,412 - 10,245,312 (-)Ensembl
RefSeq Acc Id: XM_038478168   ⟹   XP_038334096
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1610,082,332 - 10,115,224 (-)NCBI
RefSeq Acc Id: XM_038539441   ⟹   XP_038395369
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0610,294,657 - 10,327,563 (-)NCBI
RefSeq Acc Id: XM_038603522   ⟹   XP_038459450
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0610,060,836 - 10,093,722 (-)NCBI
RefSeq Acc Id: XM_038668223   ⟹   XP_038524151
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0610,212,409 - 10,245,315 (-)NCBI
RefSeq Acc Id: XM_536873   ⟹   XP_536873
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1610,212,203 - 10,245,112 (-)NCBI
Dog10K_Boxer_Tasha611,838,931 - 11,871,811 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_038334096 (Get FASTA)   NCBI Sequence Viewer  
  XP_038395369 (Get FASTA)   NCBI Sequence Viewer  
  XP_038459450 (Get FASTA)   NCBI Sequence Viewer  
  XP_038524151 (Get FASTA)   NCBI Sequence Viewer  
  XP_536873 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_536873   ⟸   XM_536873
- UniProtKB: A0A8C0NSU7 (UniProtKB/TrEMBL),   A0A8C0KNZ9 (UniProtKB/TrEMBL),   F1PT97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000022252   ⟸   ENSCAFT00000023968
RefSeq Acc Id: ENSCAFP00000031738   ⟸   ENSCAFT00000036371
RefSeq Acc Id: XP_038334096   ⟸   XM_038478168
RefSeq Acc Id: XP_038459450   ⟸   XM_038603522
RefSeq Acc Id: XP_038524151   ⟸   XM_038668223
- UniProtKB: A0A8C0NSU7 (UniProtKB/TrEMBL),   A0A8C0KNZ9 (UniProtKB/TrEMBL),   F1PT97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038395369   ⟸   XM_038539441
RefSeq Acc Id: ENSCAFP00845005122   ⟸   ENSCAFT00845006438

Promoters
RGD ID:13683552
Promoter ID:EPDNEW_C1620
Type:initiation region
Name:ARPC1A_1
Description:actin related protein 2/3 complex subunit 1A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1610,245,046 - 10,245,106EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000015094 Ensembl
  ENSCAFG00030015495 UniProtKB/TrEMBL
  ENSCAFG00040009187 UniProtKB/TrEMBL
  ENSCAFG00845003616 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00030024911.1 UniProtKB/TrEMBL
  ENSCAFP00030024975.1 UniProtKB/TrEMBL
  ENSCAFP00030025036.1 UniProtKB/TrEMBL
  ENSCAFP00040014746 UniProtKB/TrEMBL
  ENSCAFP00040014759 UniProtKB/TrEMBL
  ENSCAFP00040014796 UniProtKB/TrEMBL
  ENSCAFP00040014869 UniProtKB/TrEMBL
  ENSCAFP00040014941 UniProtKB/TrEMBL
  ENSCAFP00040015043 UniProtKB/TrEMBL
  ENSCAFP00845005122 ENTREZGENE
  ENSCAFP00845005122.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030028562.1 UniProtKB/TrEMBL
  ENSCAFT00030028639.1 UniProtKB/TrEMBL
  ENSCAFT00030028714.1 UniProtKB/TrEMBL
  ENSCAFT00040017016 UniProtKB/TrEMBL
  ENSCAFT00040017030 UniProtKB/TrEMBL
  ENSCAFT00040017072 UniProtKB/TrEMBL
  ENSCAFT00040017153 UniProtKB/TrEMBL
  ENSCAFT00040017233 UniProtKB/TrEMBL
  ENSCAFT00040017346 UniProtKB/TrEMBL
  ENSCAFT00845006438 ENTREZGENE
  ENSCAFT00845006438.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro ARC1A UniProtKB/TrEMBL
  ARC1B UniProtKB/TrEMBL
  ARPC1 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene ARPC1A ENTREZGENE
PANTHER PTHR10709 UniProtKB/TrEMBL
  PTHR10709:SF10 UniProtKB/TrEMBL
  PTHR10709:SF11 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PIRSF ARP2/3_su1 UniProtKB/TrEMBL
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A8C0KNZ9 ENTREZGENE
  A0A8C0NCE8_CANLF UniProtKB/TrEMBL
  A0A8C0NCK1_CANLF UniProtKB/TrEMBL
  A0A8C0NSU7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0S244_CANLF UniProtKB/TrEMBL
  A0A8C0S2A1_CANLF UniProtKB/TrEMBL
  A0A8C0S2D3_CANLF UniProtKB/TrEMBL
  A0A8C0S2J1_CANLF UniProtKB/TrEMBL
  A0A8C0S2J9_CANLF UniProtKB/TrEMBL
  A0A8I3MPK0_CANLF UniProtKB/TrEMBL
  F1PT97 ENTREZGENE
VGNC ID VGNC:49924 ENTREZGENE