DERL2 (derlin 2) - Rat Genome Database

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Gene: DERL2 (derlin 2) Canis lupus familiaris
Analyze
Symbol: DERL2
Name: derlin 2
RGD ID: 12090670
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN retrograde protein transport, ER to cytosol (ortholog); suckling behavior (ortholog); FOUND IN endoplasmic reticulum (ortholog); integral component of endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: Der1-like domain family, member 2; derlin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,319,660 - 31,330,846 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,319,717 - 31,330,841 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,457,816 - 31,468,997 (+)NCBI
ROS_Cfam_1.0531,424,427 - 31,435,599 (+)NCBI
UMICH_Zoey_3.1531,389,973 - 31,401,157 (+)NCBI
UNSW_CanFamBas_1.0531,348,892 - 31,360,075 (+)NCBI
UU_Cfam_GSD_1.0531,525,284 - 31,536,488 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
DERL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,319,660 - 31,330,846 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,319,717 - 31,330,841 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,457,816 - 31,468,997 (+)NCBI
ROS_Cfam_1.0531,424,427 - 31,435,599 (+)NCBI
UMICH_Zoey_3.1531,389,973 - 31,401,157 (+)NCBI
UNSW_CanFamBas_1.0531,348,892 - 31,360,075 (+)NCBI
UU_Cfam_GSD_1.0531,525,284 - 31,536,488 (+)NCBI
DERL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl175,471,254 - 5,486,811 (-)EnsemblGRCh38hg38GRCh38
GRCh38175,471,254 - 5,486,225 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37175,374,574 - 5,389,498 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36175,318,337 - 5,330,221 (-)NCBINCBI36hg18NCBI36
Build 34175,318,336 - 5,330,218NCBI
Celera175,393,985 - 5,405,873 (-)NCBI
Cytogenetic Map17p13.2NCBI
HuRef175,268,081 - 5,279,745 (-)NCBIHuRef
CHM1_1175,387,294 - 5,399,165 (-)NCBICHM1_1
Derl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,898,266 - 70,910,667 (-)NCBIGRCm39mm39
GRCm39 Ensembl1170,897,990 - 70,910,667 (-)Ensembl
GRCm381171,007,440 - 71,019,841 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1171,007,164 - 71,019,841 (-)EnsemblGRCm38mm10GRCm38
MGSCv371170,820,947 - 70,832,765 (-)NCBIGRCm37mm9NCBIm37
MGSCv361170,823,640 - 70,835,458 (-)NCBImm8
Celera1178,561,860 - 78,573,678 (-)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1143.21NCBI
Derl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21055,727,764 - 55,739,462 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1055,727,643 - 55,739,518 (-)Ensembl
Rnor_6.01057,641,682 - 57,653,554 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,644,207 - 57,653,359 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01057,386,894 - 57,398,868 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1054,873,447 - 54,885,319 (-)NCBICelera
Cytogenetic Map10q24NCBI
Derl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,825,341 - 10,837,328 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,824,922 - 10,837,408 (-)NCBIChiLan1.0ChiLan1.0
DERL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1175,514,440 - 5,526,363 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl175,514,440 - 5,526,363 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0175,519,183 - 5,534,145 (-)NCBIMhudiblu_PPA_v0panPan3
Derl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,558,913 - 53,572,084 (-)NCBI
SpeTri2.0NW_0049366772,328,783 - 2,342,068 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DERL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,507,996 - 51,524,793 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11251,508,138 - 51,524,799 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DERL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,882,296 - 4,897,799 (-)NCBI
ChlSab1.1 Ensembl164,881,876 - 4,898,078 (-)Ensembl
Vero_WHO_p1.0NW_02366605916,689,748 - 16,705,481 (+)NCBI
Derl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247869,274,302 - 9,285,645 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005619888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014113489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022418419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022418420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038475295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038475296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038475297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038475298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038536465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038536466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038536467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038536468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038600663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038600664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038600665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038600666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038600667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038665189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038665190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038665191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038665192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_843261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000044998   ⟹   ENSCAFP00000041590
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl531,319,717 - 31,330,656 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000063703   ⟹   ENSCAFP00000055568
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl531,319,717 - 31,330,841 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000080172   ⟹   ENSCAFP00000066291
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl531,319,717 - 31,325,631 (+)Ensembl
RefSeq Acc Id: XM_005619888   ⟹   XP_005619945
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1531,319,660 - 31,330,846 (+)NCBI
Dog10K_Boxer_Tasha531,457,816 - 31,468,997 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014113489   ⟹   XP_013968964
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1531,319,671 - 31,330,846 (+)NCBI
Dog10K_Boxer_Tasha531,457,821 - 31,468,997 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022418419   ⟹   XP_022274127
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1531,319,663 - 31,330,846 (+)NCBI
Dog10K_Boxer_Tasha531,457,816 - 31,468,997 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022418420   ⟹   XP_022274128
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1531,319,782 - 31,330,846 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038475295   ⟹   XP_038331223
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1531,389,973 - 31,401,157 (+)NCBI
RefSeq Acc Id: XM_038475296   ⟹   XP_038331224
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1531,389,973 - 31,401,157 (+)NCBI
RefSeq Acc Id: XM_038475297   ⟹   XP_038331225
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1531,389,973 - 31,401,157 (+)NCBI
RefSeq Acc Id: XM_038475298   ⟹   XP_038331226
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1531,389,978 - 31,401,157 (+)NCBI
RefSeq Acc Id: XM_038536465   ⟹   XP_038392393
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0531,525,284 - 31,536,488 (+)NCBI
RefSeq Acc Id: XM_038536466   ⟹   XP_038392394
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0531,525,284 - 31,536,488 (+)NCBI
RefSeq Acc Id: XM_038536467   ⟹   XP_038392395
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0531,525,284 - 31,536,488 (+)NCBI
RefSeq Acc Id: XM_038536468   ⟹   XP_038392396
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0531,525,289 - 31,536,488 (+)NCBI
RefSeq Acc Id: XM_038600663   ⟹   XP_038456591
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0531,348,892 - 31,360,075 (+)NCBI
RefSeq Acc Id: XM_038600664   ⟹   XP_038456592
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0531,348,892 - 31,360,075 (+)NCBI
RefSeq Acc Id: XM_038600665   ⟹   XP_038456593
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0531,348,892 - 31,359,821 (+)NCBI
RefSeq Acc Id: XM_038600666   ⟹   XP_038456594
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0531,348,892 - 31,360,075 (+)NCBI
RefSeq Acc Id: XM_038600667   ⟹   XP_038456595
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0531,348,897 - 31,360,075 (+)NCBI
RefSeq Acc Id: XM_038665189   ⟹   XP_038521117
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0531,424,427 - 31,435,599 (+)NCBI
RefSeq Acc Id: XM_038665190   ⟹   XP_038521118
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0531,424,427 - 31,435,599 (+)NCBI
RefSeq Acc Id: XM_038665191   ⟹   XP_038521119
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0531,424,427 - 31,435,599 (+)NCBI
RefSeq Acc Id: XM_038665192   ⟹   XP_038521120
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0531,424,432 - 31,435,599 (+)NCBI
RefSeq Acc Id: XM_843261   ⟹   XP_848354
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1531,319,660 - 31,330,846 (+)NCBI
Dog10K_Boxer_Tasha531,457,816 - 31,468,997 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005619945   ⟸   XM_005619888
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_848354   ⟸   XM_843261
- Peptide Label: isoform X3
- UniProtKB: J9P7F3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013968964   ⟸   XM_014113489
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_022274127   ⟸   XM_022418419
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_022274128   ⟸   XM_022418420
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSCAFP00000041590   ⟸   ENSCAFT00000044998
RefSeq Acc Id: ENSCAFP00000066291   ⟸   ENSCAFT00000080172
RefSeq Acc Id: ENSCAFP00000055568   ⟸   ENSCAFT00000063703
RefSeq Acc Id: XP_038331223   ⟸   XM_038475295
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038331225   ⟸   XM_038475297
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038331224   ⟸   XM_038475296
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038331226   ⟸   XM_038475298
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038456591   ⟸   XM_038600663
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038456594   ⟸   XM_038600666
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038456592   ⟸   XM_038600664
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038456593   ⟸   XM_038600665
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038456595   ⟸   XM_038600667
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038521117   ⟸   XM_038665189
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038521119   ⟸   XM_038665191
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038521118   ⟸   XM_038665190
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038521120   ⟸   XM_038665192
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038392393   ⟸   XM_038536465
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038392395   ⟸   XM_038536467
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038392394   ⟸   XM_038536466
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038392396   ⟸   XM_038536468
- Peptide Label: isoform X4

Promoters
RGD ID:13683199
Promoter ID:EPDNEW_C1267
Type:multiple initiation site
Name:DERL2_1
Description:derlin 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1531,319,705 - 31,319,765EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000032265 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000041590 ENTREZGENE
Ensembl Transcript ENSCAFT00000044998 ENTREZGENE
NCBI Gene DERL2 ENTREZGENE
UniProt J9P7F3 ENTREZGENE
VGNC ID VGNC:39903 ENTREZGENE