TMEM200A (transmembrane protein 200A) - Rat Genome Database

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Gene: TMEM200A (transmembrane protein 200A) Canis lupus familiaris
Analyze
Symbol: TMEM200A
Name: transmembrane protein 200A
RGD ID: 12089733
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1168,843,121 - 68,850,463 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl168,791,976 - 68,849,844 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha169,541,530 - 69,600,207 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0169,007,359 - 69,066,105 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl169,007,396 - 69,066,131 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1168,928,571 - 68,987,060 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0168,709,535 - 68,768,340 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0169,356,859 - 69,415,733 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
TMEM200A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1168,843,121 - 68,850,463 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl168,791,976 - 68,849,844 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha169,541,530 - 69,600,207 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0169,007,359 - 69,066,105 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl169,007,396 - 69,066,131 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1168,928,571 - 68,987,060 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0168,709,535 - 68,768,340 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0169,356,859 - 69,415,733 (+)NCBIUU_Cfam_GSD_1.0
TMEM200A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386130,365,531 - 130,443,067 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6130,366,017 - 130,443,067 (+)EnsemblGRCh38hg38GRCh38
GRCh376130,687,162 - 130,764,212 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366130,799,955 - 130,805,905 (+)NCBINCBI36Build 36hg18NCBI36
Build 346130,799,954 - 130,805,901NCBI
Celera6131,504,667 - 131,510,617 (+)NCBICelera
Cytogenetic Map6q23.1NCBI
HuRef6128,268,803 - 128,345,589 (+)NCBIHuRef
CHM1_16130,950,488 - 131,027,285 (+)NCBICHM1_1
T2T-CHM13v2.06131,560,183 - 131,637,851 (+)NCBIT2T-CHM13v2.0
Tmem200a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391025,867,080 - 25,955,713 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1025,788,229 - 25,954,950 (-)EnsemblGRCm39 Ensembl
GRCm381025,991,182 - 26,079,209 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1025,912,331 - 26,079,052 (-)EnsemblGRCm38mm10GRCm38
MGSCv371025,710,992 - 25,798,858 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361025,680,601 - 25,768,066 (-)NCBIMGSCv36mm8
Celera1026,908,030 - 26,996,142 (-)NCBICelera
Cytogenetic Map10A4NCBI
cM Map1013.03NCBI
Tmem200a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8121,142,500 - 21,242,022 (+)NCBIGRCr8
mRatBN7.2119,323,646 - 19,408,324 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl119,323,829 - 19,406,453 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx119,100,670 - 19,181,589 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0125,102,651 - 25,183,570 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0119,300,535 - 19,381,454 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0120,330,670 - 20,413,921 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl120,331,976 - 20,412,381 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0121,818,826 - 21,898,480 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4119,783,813 - 19,869,008 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera117,715,224 - 17,795,796 (+)NCBICelera
Cytogenetic Map1p12NCBI
Tmem200a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543611,257,029 - 11,268,167 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543611,257,029 - 11,268,167 (+)NCBIChiLan1.0ChiLan1.0
TMEM200A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25150,369,838 - 150,447,663 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16148,276,609 - 148,354,389 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06128,164,155 - 128,241,703 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16132,270,737 - 132,348,206 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6132,345,204 - 132,346,679 (+)Ensemblpanpan1.1panPan2
Tmem200a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946118,935,957 - 119,006,945 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936790957,118 - 958,593 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936790955,111 - 1,026,637 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM200A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl132,961,754 - 33,033,019 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1132,958,781 - 33,033,107 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2136,389,398 - 36,458,419 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM200A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11343,135,826 - 43,215,344 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1343,137,294 - 43,138,769 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604015,273,315 - 15,353,313 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem200a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247534,596,034 - 4,670,661 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247534,595,950 - 4,670,661 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMEM200A
121 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 3
Low 4 5 9 2 6 2 6 2 9 5 6
Below cutoff 1 9 4 4 4 8 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000001710   ⟹   ENSCAFP00000001575
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl168,791,976 - 68,849,844 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845002774   ⟹   ENSCAFP00845002200
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl169,007,396 - 69,066,131 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845002779   ⟹   ENSCAFP00845002205
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl169,057,726 - 69,065,602 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845002783   ⟹   ENSCAFP00845002209
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl169,062,887 - 69,065,606 (+)Ensembl
RefSeq Acc Id: XM_038466081   ⟹   XP_038322009
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1168,928,571 - 68,987,060 (+)NCBI
RefSeq Acc Id: XM_038526769   ⟹   XP_038382697
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0169,356,859 - 69,415,733 (+)NCBI
RefSeq Acc Id: XM_038526770   ⟹   XP_038382698
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0169,356,885 - 69,415,733 (+)NCBI
RefSeq Acc Id: XM_038555978   ⟹   XP_038411906
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha169,541,530 - 69,600,207 (+)NCBI
RefSeq Acc Id: XM_038556049   ⟹   XP_038411977
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha169,541,556 - 69,600,207 (+)NCBI
RefSeq Acc Id: XM_038591067   ⟹   XP_038446995
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0168,709,535 - 68,768,340 (+)NCBI
RefSeq Acc Id: XM_038591068   ⟹   XP_038446996
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0168,709,561 - 68,768,340 (+)NCBI
RefSeq Acc Id: XM_038654866   ⟹   XP_038510794
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0169,007,359 - 69,066,105 (+)NCBI
RefSeq Acc Id: XM_038654867   ⟹   XP_038510795
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0169,007,385 - 69,066,105 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000001575   ⟸   ENSCAFT00000001710
RefSeq Acc Id: XP_038322009   ⟸   XM_038466081
RefSeq Acc Id: XP_038446995   ⟸   XM_038591067
RefSeq Acc Id: XP_038446996   ⟸   XM_038591068
RefSeq Acc Id: XP_038510794   ⟸   XM_038654866
- UniProtKB: A0A8I3MJF5 (UniProtKB/TrEMBL),   A0A8I3RQ24 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038510795   ⟸   XM_038654867
- UniProtKB: A0A8I3MJF5 (UniProtKB/TrEMBL),   A0A8I3RQ24 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038411906   ⟸   XM_038555978
- UniProtKB: A0A8P0PH53 (UniProtKB/TrEMBL),   A0A8P0S791 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038411977   ⟸   XM_038556049
- UniProtKB: A0A8P0PH53 (UniProtKB/TrEMBL),   A0A8P0S791 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038382697   ⟸   XM_038526769
- UniProtKB: A0A8I3RQ24 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038382698   ⟸   XM_038526770
- UniProtKB: A0A8I3RQ24 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845002209   ⟸   ENSCAFT00845002783
RefSeq Acc Id: ENSCAFP00845002200   ⟸   ENSCAFT00845002774
RefSeq Acc Id: ENSCAFP00845002205   ⟸   ENSCAFT00845002779


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000001117 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845001609 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000001710.4 UniProtKB/TrEMBL
  ENSCAFT00000094228.1 UniProtKB/TrEMBL
  ENSCAFT00000095319.1 UniProtKB/TrEMBL
  ENSCAFT00845002774 ENTREZGENE
  ENSCAFT00845002774.1 UniProtKB/TrEMBL
  ENSCAFT00845002779.1 UniProtKB/TrEMBL
  ENSCAFT00845002783.1 UniProtKB/TrEMBL
InterPro DUF2371_TMEM200 UniProtKB/TrEMBL
NCBI Gene TMEM200A ENTREZGENE
PANTHER PTHR31815 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 200A UniProtKB/TrEMBL
Pfam DUF2371 UniProtKB/TrEMBL
UniProt A0A8I3MJF5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RQ24 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PH53 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0S791 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:47519 ENTREZGENE