RAB11B (RAB11B, member RAS oncogene family) - Rat Genome Database

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Gene: RAB11B (RAB11B, member RAS oncogene family) Canis lupus familiaris
Analyze
Symbol: RAB11B
Name: RAB11B, member RAS oncogene family
RGD ID: 12089684
Description: ENCODES a protein that exhibits GDP binding (ortholog); myosin V binding (ortholog); INVOLVED IN amyloid-beta clearance by transcytosis (ortholog); cellular response to acidic pH (ortholog); endocytic recycling (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); human immunodeficiency virus infectious disease (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); synaptic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ras-related protein Rab-11B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12052,955,949 - 52,966,279 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2052,956,529 - 52,965,383 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2052,757,255 - 52,768,977 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02053,484,088 - 53,495,852 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2053,484,656 - 53,498,327 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12052,686,120 - 52,697,840 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02053,131,752 - 53,143,468 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02053,363,591 - 53,375,312 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RAB11B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12052,955,949 - 52,966,279 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2052,956,529 - 52,965,383 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2052,757,255 - 52,768,977 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02053,484,088 - 53,495,852 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2053,484,656 - 53,498,327 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12052,686,120 - 52,697,840 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02053,131,752 - 53,143,468 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02053,363,591 - 53,375,312 (+)NCBIUU_Cfam_GSD_1.0
RAB11B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38198,390,360 - 8,404,434 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl198,389,981 - 8,404,434 (+)EnsemblGRCh38hg38GRCh38
GRCh37198,455,244 - 8,469,318 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36198,361,296 - 8,374,479 (+)NCBINCBI36Build 36hg18NCBI36
Build 34198,361,295 - 8,374,479NCBI
Celera198,311,860 - 8,325,986 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef198,108,703 - 8,123,515 (+)NCBIHuRef
CHM1_1198,454,661 - 8,468,772 (+)NCBICHM1_1
T2T-CHM13v2.0198,376,828 - 8,390,915 (+)NCBIT2T-CHM13v2.0
Rab11b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391733,961,458 - 33,979,460 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1733,961,458 - 33,979,504 (-)EnsemblGRCm39 Ensembl
GRCm381733,742,484 - 33,760,486 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1733,742,484 - 33,760,530 (-)EnsemblGRCm38mm10GRCm38
MGSCv371733,879,429 - 33,897,431 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361733,353,479 - 33,367,177 (-)NCBIMGSCv36mm8
Celera1736,499,813 - 36,517,815 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
Rab11b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8715,223,613 - 15,236,754 (-)NCBIGRCr8
mRatBN7.2714,521,448 - 14,534,589 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl714,521,368 - 14,534,593 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx717,530,010 - 17,543,161 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0719,395,243 - 19,408,385 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0717,275,599 - 17,288,744 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0718,598,991 - 18,612,132 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl718,598,880 - 18,612,147 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0718,776,591 - 18,789,732 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4716,232,840 - 16,246,007 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1716,232,842 - 16,246,007 (-)NCBI
Celera713,420,039 - 13,433,194 (-)NCBICelera
Cytogenetic Map7q13NCBI
Rab11b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555631,008,769 - 1,017,315 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555631,008,267 - 1,017,315 (-)NCBIChiLan1.0ChiLan1.0
RAB11B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22013,058,006 - 13,072,108 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11912,174,697 - 12,188,777 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0197,676,095 - 7,690,177 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1198,526,294 - 8,540,147 (+)NCBIpanpan1.1PanPan1.1panPan2
Rab11b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118212,624,348 - 212,636,058 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365885,198,394 - 5,214,603 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365885,198,659 - 5,210,430 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB11B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl270,884,462 - 70,896,172 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1270,884,457 - 70,896,169 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2271,251,151 - 71,262,863 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB11B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.167,743,130 - 7,757,237 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl67,743,361 - 7,757,305 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607412,504,898 - 12,519,218 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab11b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248281,165,327 - 1,174,417 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248281,165,877 - 1,174,306 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RAB11B
140 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 5 12 8 10 6
Low 1
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000048184   ⟹   ENSCAFP00000035962
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2052,956,529 - 52,965,383 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000074347   ⟹   ENSCAFP00000063381
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2052,956,569 - 52,965,383 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000076695   ⟹   ENSCAFP00000065360
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2052,956,569 - 52,964,673 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845010776   ⟹   ENSCAFP00845008410
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2053,484,656 - 53,492,673 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845010797   ⟹   ENSCAFP00845008425
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2053,484,658 - 53,498,327 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845010824   ⟹   ENSCAFP00845008446
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2053,490,908 - 53,498,327 (+)Ensembl
RefSeq Acc Id: XM_038428823   ⟹   XP_038284751
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02053,484,088 - 53,495,852 (+)NCBI
RefSeq Acc Id: XM_038455269   ⟹   XP_038311197
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2052,757,255 - 52,768,977 (+)NCBI
RefSeq Acc Id: XM_038504452   ⟹   XP_038360380
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12052,686,120 - 52,697,840 (+)NCBI
RefSeq Acc Id: XM_038567499   ⟹   XP_038423427
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02053,363,591 - 53,375,312 (+)NCBI
RefSeq Acc Id: XM_038631648   ⟹   XP_038487576
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02053,131,752 - 53,143,468 (+)NCBI
RefSeq Acc Id: ENSCAFP00000063381   ⟸   ENSCAFT00000074347
RefSeq Acc Id: ENSCAFP00000035962   ⟸   ENSCAFT00000048184
RefSeq Acc Id: ENSCAFP00000065360   ⟸   ENSCAFT00000076695
RefSeq Acc Id: XP_038360380   ⟸   XM_038504452
RefSeq Acc Id: XP_038487576   ⟸   XM_038631648
RefSeq Acc Id: XP_038284751   ⟸   XM_038428823
- UniProtKB: A0A8C0NVN4 (UniProtKB/TrEMBL),   A0A8C0LG76 (UniProtKB/TrEMBL),   A0A8I3N1W0 (UniProtKB/TrEMBL),   A0A8C0NCU4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038311197   ⟸   XM_038455269
- UniProtKB: A0A8C0NVN4 (UniProtKB/TrEMBL),   A0A8C0LG76 (UniProtKB/TrEMBL),   A0A8I3N1W0 (UniProtKB/TrEMBL),   A0A8C0NCU4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423427   ⟸   XM_038567499
- UniProtKB: A0A8C0LG76 (UniProtKB/TrEMBL),   A0A8C0NCU4 (UniProtKB/TrEMBL),   A0A8C0NVN4 (UniProtKB/TrEMBL),   A0A8I3N1W0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845008446   ⟸   ENSCAFT00845010824
RefSeq Acc Id: ENSCAFP00845008410   ⟸   ENSCAFT00845010776
RefSeq Acc Id: ENSCAFP00845008425   ⟸   ENSCAFT00845010797

Promoters
RGD ID:13687076
Promoter ID:EPDNEW_C5142
Type:initiation region
Name:RAB11B_1
Description:RAB11B, member RAS oncogene family
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12052,956,515 - 52,956,575EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000032060 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030013926 UniProtKB/TrEMBL
  ENSCAFG00030016224 UniProtKB/TrEMBL
  ENSCAFG00040021795 UniProtKB/TrEMBL
  ENSCAFG00040025500 UniProtKB/TrEMBL
  ENSCAFG00845006072 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000048184.3 UniProtKB/TrEMBL
  ENSCAFT00000074347.2 UniProtKB/TrEMBL
  ENSCAFT00000076695.2 UniProtKB/TrEMBL
  ENSCAFT00030025880.1 UniProtKB/TrEMBL
  ENSCAFT00030029924.1 UniProtKB/TrEMBL
  ENSCAFT00040040463.1 UniProtKB/TrEMBL
  ENSCAFT00040047616.1 UniProtKB/TrEMBL
  ENSCAFT00845010776.1 UniProtKB/TrEMBL
  ENSCAFT00845010797 ENTREZGENE
  ENSCAFT00845010797.1 UniProtKB/TrEMBL
  ENSCAFT00845010824.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
NCBI Gene RAB11B ENTREZGENE
PANTHER DRAB11-RELATED UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-11A UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-11B UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C0LG76 ENTREZGENE
  A0A8C0NCU4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0NVN4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N1M4_CANLF UniProtKB/TrEMBL
  A0A8I3N1Q2_CANLF UniProtKB/TrEMBL
  A0A8I3N1W0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PC68_CANLF UniProtKB/TrEMBL
  A0A8P0TGT5_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:45249 ENTREZGENE