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Gene: ATOH1 (atonal bHLH transcription factor 1) Canis lupus familiaris

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Symbol:

ATOH1

Name:

atonal bHLH transcription factor 1

RGD ID:

12087036

Description:

ENCODES a protein that exhibits chromatin DNA binding (inferred); DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); INVOLVED IN auditory receptor cell fate determination (ortholog); auditory receptor cell fate specification (ortholog); axon guidance (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness (ortholog); autosomal dominant nonsyndromic deafness 89 (ortholog); Developmental Disabilities (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ATH1; atonal homolog 1; protein atonal homolog 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	32	16,807,217 - 16,809,294 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	32	16,807,336 - 16,808,406 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	32	25,139,203 - 25,141,513 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	32	16,985,533 - 16,987,838 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	32	16,985,749 - 16,986,819 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	32	16,957,560 - 16,959,866 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	32	16,773,311 - 16,775,500 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	32	23,118,806 - 23,121,117 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant nonsyndromic deafness (ISO)

autosomal dominant nonsyndromic deafness 89 (ISO)

Developmental Disabilities (ISO)

Hearing Loss (ISO)

medulloblastoma (ISO)

pontocerebellar hypoplasia (ISO)

pontocerebellar hypoplasia type 1B (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

auditory receptor cell fate determination (IEA,ISO)

auditory receptor cell fate specification (IEA,ISO)

axon development (IBA)

axon guidance (IEA,ISO)

brain development (IEA,ISO)

cell differentiation (IEA,ISO)

cerebral cortex development (IEA,ISO)

epithelial cell apoptotic process (IEA,ISO)

inner ear auditory receptor cell differentiation (IEA,ISO)

inner ear development (IEA,ISO)

inner ear morphogenesis (IEA,ISO)

negative regulation of epithelial cell apoptotic process (IEA,ISO)

negative regulation of gliogenesis (IEA)

neuroblast migration (IEA,ISO)

neuron differentiation (IEA,ISO)

neuron fate commitment (IBA)

neuron migration (IEA,ISO)

Notch signaling pathway (IEA,ISO)

positive regulation of inner ear auditory receptor cell differentiation (IEA,ISO)

positive regulation of inner ear receptor cell differentiation (IEA,ISO)

positive regulation of neuron differentiation (IEA)

positive regulation of transcription by RNA polymerase II (IBA,IEA,ISO)

regulation of neuron differentiation (IEA,ISO)

sensory organ development (IBA)

transcription by RNA polymerase II (IEA,ISO)

Cellular Component

nucleus (IBA,IEA)

Molecular Function

chromatin DNA binding (IEA)

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

E-box binding (IBA)

protein binding (ISO)

protein dimerization activity (IEA)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

sequence-specific DNA binding (IEA)

sequence-specific double-stranded DNA binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:25403511

Genomics

Comparative Map Data

ATOH1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	32	16,807,217 - 16,809,294 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	32	16,807,336 - 16,808,406 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	32	25,139,203 - 25,141,513 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	32	16,985,533 - 16,987,838 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	32	16,985,749 - 16,986,819 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	32	16,957,560 - 16,959,866 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	32	16,773,311 - 16,775,500 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	32	23,118,806 - 23,121,117 (-)	NCBI		UU_Cfam_GSD_1.0

ATOH1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	93,828,753 - 93,830,964 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	93,828,753 - 93,830,964 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	94,749,904 - 94,752,115 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	94,969,101 - 94,970,165 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	95,107,255 - 95,108,320	NCBI
Celera	4	92,046,181 - 92,047,245 (+)	NCBI		Celera
Cytogenetic Map	4	q22.2	NCBI
HuRef	4	90,487,368 - 90,488,432 (+)	NCBI		HuRef
CHM1_1	4	94,726,590 - 94,727,654 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	97,144,124 - 97,146,335 (+)	NCBI		T2T-CHM13v2.0

Atoh1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	64,706,109 - 64,708,229 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	64,706,109 - 64,708,229 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	64,729,125 - 64,731,245 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	64,729,125 - 64,731,245 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	64,679,140 - 64,681,237 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	64,658,735 - 64,660,821 (+)	NCBI		MGSCv36	mm8
Celera	6	66,856,661 - 66,858,758 (+)	NCBI		Celera
Cytogenetic Map	6	C1	NCBI
cM Map	6	30.03	NCBI

Atoh1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	95,241,933 - 95,244,028 (+)	NCBI		GRCr8
mRatBN7.2	4	93,912,068 - 93,914,163 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	93,912,068 - 93,914,154 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	99,138,821 - 99,140,918 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	94,913,774 - 94,915,871 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	93,336,612 - 93,338,707 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	95,498,003 - 95,500,098 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	95,498,003 - 95,500,089 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	160,284,441 - 160,286,536 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	94,109,650 - 94,111,745 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	88,659,055 - 88,661,150 (+)	NCBI		Celera
Cytogenetic Map	4	q31	NCBI

Atoh1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	4,461,704 - 4,462,756 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	4,461,704 - 4,462,756 (+)	NCBI	ChiLan1.0	ChiLan1.0

ATOH1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	91,853,914 - 91,856,688 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	92,132,530 - 92,135,303 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	86,188,534 - 86,191,301 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	96,863,733 - 96,864,905 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	96,863,762 - 96,864,832 (+)	Ensembl	panpan1.1		panPan2

Atoh1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	24,908,942 - 24,911,175 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936687	1,436,009 - 1,437,067 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936687	1,435,977 - 1,437,138 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATOH1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	125,768,286 - 125,770,545 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	125,768,232 - 125,770,619 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	135,103,515 - 135,105,739 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ATOH1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	42,098,057 - 42,104,910 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	42,100,996 - 42,102,060 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	20,456,111 - 20,458,324 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atoh1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624757	21,517,809 - 21,518,864 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624757	21,517,650 - 21,519,543 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in ATOH1
15 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
5	3	13	6	2	1	3	13	8	9	10	2

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038443809	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038518941	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038581740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038646156	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_544986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000015937 ⟹ ENSCAFP00000014743

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	32	16,807,336 - 16,808,406 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845036002 ⟹ ENSCAFP00845028176

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	32	16,985,749 - 16,986,819 (+)	Ensembl

RefSeq Acc Id:

XM_038443809 ⟹ XP_038299737

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	32	16,985,533 - 16,987,838 (+)	NCBI

RefSeq Acc Id:

XM_038518941 ⟹ XP_038374869

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	32	16,957,560 - 16,959,866 (+)	NCBI

RefSeq Acc Id:

XM_038581740 ⟹ XP_038437668

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	32	23,118,806 - 23,121,117 (-)	NCBI

RefSeq Acc Id:

XM_038646156 ⟹ XP_038502084

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	32	16,773,311 - 16,775,500 (+)	NCBI

RefSeq Acc Id:

XM_544986 ⟹ XP_544986

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	32	16,807,217 - 16,809,294 (+)	NCBI
Dog10K_Boxer_Tasha	32	25,139,203 - 25,141,513 (-)	NCBI

Sequence:

show sequence

AAAAAAAAAAAAAAAAAAACCAAGACATTGCAGTAGAGACCCAGGAAGGGTTTTTGTTGTAGTT
GAGCTGGTTTGCCAGTCCCTCCTCCGACCCTGCGCCTCCGAGCCTCCGAAGTGCAATGTCCCGC
CTGCTGCACGCAGAGGAGTGGGCTGAAGTGAAGGAGTTGGGGGACCACCATCGCCATCCCCAGC
CTCACCACCTGCCGCCGCCGCCGCCGCCGCCACCTGCGACCCTGCAGACGAGAGAGCATCCCGT
CTACCCGGCCGAGCTGTCCCTCCTGGACGGCACCGACCCACGCGCCTGGCTGGCTCCTACTTTG
CAGGGCATCTGCACGGCACGCGCCGCCCAGTACTTGCTGCATTCCCCCGAGCTGGGTGTCTCTG
AGGCTGCGGCGCCCCGGGAGGAGGCGGACGGCCGGGGGGAGCTGGTGAGGAGGAGCGGCGGCGG
CGGCGGCGGCGGCGGCGGCAGCAGCAAGAGTCCGGGACCAGTGAAAGTGCGGGAACAGCTGTGT
AAGCTGAAAGGCGGGGTGGGAGTAGACGAGCTGGGCTGCAGCCGCCAGCGCGCCCCTTCCAGCA
AACAGGTGAACGGGGTGCAGAAGCAGAGGCGGCTGGCGGCCAACGCCAGGGAGCGACGCAGGAT
GCACGGGCTGAACCACGCCTTCGACCAGCTGCGCAACGTTATCCCGTCCTTCAACAACGACAAG
AAGCTGTCCAAATACGAGACCCTGCAGATGGCCCAGATCTACATCAACGCCCTGTCCGAGCTGC
TGCAAACGCCCAGCGGCGGGGAGCAGCCGCCGCCGCCGCCCGCATCCTGCAAGAGCGACCACCA
CCACCTTCGCGCCGCCGCCCCCTACGAAGGCGGCGCGGGCACGGCGAGCGCAGCGGGAGCCCAG
CCGGCCTCGGGAGGGGGCCAGCGGCCCTCGGCGCCCGGAGGTTGCCGGACTCGCTTCTCGGCCC
CGGCCCCCGCGGGAGGATACGCGGTGCAGCTGGACGCTCTGCACTTCCCGACTTTCGAGGACAG
CGCCCTGACGGCGATGATGGCGCAAAAGAACCTGTCGCCTTCCCTGCCCGGGGGCATCCTGCAG
CCGGGGCAGGAAGAAAGTAGCAAAACTTCGCCCCGGTCCCACAGAAGCGACGGGGAGTTTTCCC
CCCATTCCCATTACAGTGACTCAGATGAGGCAAGTTAGGAAGGTGACAGAAACCTGAAAACTGA
GACAGAAACGAAATCGCCCTTGCCCAGTGCGCGGGAAGCCCCGCGGTTAAAGATCCCCGCACCC
TTTTCATTTTTGCTCTGCGATTGTCGTTGTTTAGCAACGACTTGGCTTCACATGGCAGCTATAT
TTGATGGTTTGCAAAAGCCGCCGCTGTCCCGAACTTCCTGTGGTCCATATTGATGAAAACTTGC
TGTTAAAGTTGTGTTCTTTCCTCCCACCTCCCCCCCCTCCCCGTAGGTAGATGAGGAATGATTA
TATGTACCCAAATATGCATCATCCTTCTAGTTCCCTGCTGCCAATACGCTGCTAAGATGTCGCA
TTTTCTTCTCAGTCGCTGGTTTGTGTTTTAATTTATTTTATGCCCTGGGCATTCATCCCTGTGT
GTTGCGCGCACTCACGTGTGGGAGAGTTAGTATTCCGAAGGATTTTCTCAAAAATGTATCATGA
AACGCAAAGTGAATGGCTCCAAAGTGAATAACCTTTGACGATGGAACGTTAGAAAACAGAGGAC
TCTTAGGTTTATATATTGTATAAACATACCCAGTATGTATATCGGATCGCGATGATGTTGGCGT
CTTCTAGGAAACTTGGCGCACGCACTTTATCAGCCGCTACTGCTGCGGCTCCAGGACAAACTCA
GCTGCCAATTGCAGACCAGTTTTTGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTAAACAA
GGCCACTTATGATCCTTAAGCTCTTTGCAAATGTTTGTTTAAAAATTAAAATTAAAAAAAAAAT
CCAGTAGTGTCAAAAGCATTTGGTCAATTTTATTTTGCTTTGTTAATGTTAGGAAACTTATTTA
TTATTGATTGTTTGCTACCATTTCTACTTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038299737	(Get FASTA)	NCBI Sequence Viewer
	XP_038374869	(Get FASTA)	NCBI Sequence Viewer
	XP_038437668	(Get FASTA)	NCBI Sequence Viewer
	XP_038502084	(Get FASTA)	NCBI Sequence Viewer
	XP_544986	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000014743.4
	ENSCAFP00030039566.1
	ENSCAFP00040030827.1
	ENSCAFP00845028176
	ENSCAFP00845028176.1

RefSeq Acc Id:

XP_544986 ⟸ XM_544986

- UniProtKB:

A0A8C0JR89 (UniProtKB/TrEMBL), A0A8C0T811 (UniProtKB/TrEMBL), A0A8I3P7P9 (UniProtKB/TrEMBL), A0A8C0RSS5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSRLLHAEEWAEVKELGDHHRHPQPHHLPPPPPPPPATLQTREHPVYPAELSLLDGTDPRAWLA
PTLQGICTARAAQYLLHSPELGVSEAAAPREEADGRGELVRRSGGGGGGGGGSSKSPGPVKVRE
QLCKLKGGVGVDELGCSRQRAPSSKQVNGVQKQRRLAANARERRRMHGLNHAFDQLRNVIPSFN
NDKKLSKYETLQMAQIYINALSELLQTPSGGEQPPPPPASCKSDHHHLRAAAPYEGGAGTASAA
GAQPASGGGQRPSAPGGCRTRFSAPAPAGGYAVQLDALHFPTFEDSALTAMMAQKNLSPSLPGG
ILQPGQEESSKTSPRSHRSDGEFSPHSHYSDSDEAS

hide sequence

Ensembl Acc Id:

ENSCAFP00000014743 ⟸ ENSCAFT00000015937

RefSeq Acc Id:

XP_038374869 ⟸ XM_038518941

RefSeq Acc Id:

XP_038502084 ⟸ XM_038646156

RefSeq Acc Id:	XP_038299737 ⟸ XM_038443809
- UniProtKB:	A0A8C0JR89 (UniProtKB/TrEMBL), A0A8C0T811 (UniProtKB/TrEMBL), A0A8I3P7P9 (UniProtKB/TrEMBL), A0A8C0RSS5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038437668 ⟸ XM_038581740
- UniProtKB:	A0A8C0JR89 (UniProtKB/TrEMBL), A0A8C0RSS5 (UniProtKB/TrEMBL), A0A8C0T811 (UniProtKB/TrEMBL), A0A8I3P7P9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845028176 ⟸ ENSCAFT00845036002

Protein Domains

bHLH

Promoters

RGD ID:

13688720

Promoter ID:

EPDNEW_C6787

Type:

single initiation site

Name:

ATOH1_1

Description:

atonal bHLH transcription factor 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	32	16,807,416 - 16,807,476	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000010016	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030024636	UniProtKB/TrEMBL
	ENSCAFG00040019159	UniProtKB/TrEMBL
	ENSCAFG00845020445	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000015937.5	UniProtKB/TrEMBL
	ENSCAFT00030045316.1	UniProtKB/TrEMBL
	ENSCAFT00040035408.1	UniProtKB/TrEMBL
	ENSCAFT00845036002	ENTREZGENE
	ENSCAFT00845036002.1	UniProtKB/TrEMBL
Gene3D-CATH	4.10.280.10	UniProtKB/TrEMBL
InterPro	ATOH1	UniProtKB/TrEMBL
	bHLH_dom	UniProtKB/TrEMBL
	bHLH_transcription_factors	UniProtKB/TrEMBL
	HLH_DNA-bd_sf	UniProtKB/TrEMBL
KEGG Report	cfa:487864	UniProtKB/TrEMBL
NCBI Gene	ATOH1	ENTREZGENE
PANTHER	BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED	UniProtKB/TrEMBL
	PTHR19290:SF82	UniProtKB/TrEMBL
Pfam	HLH	UniProtKB/TrEMBL
PROSITE	BHLH	UniProtKB/TrEMBL
SMART	HLH	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47459	UniProtKB/TrEMBL
UniProt	A0A8C0JR89	ENTREZGENE
	A0A8C0RSS5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0T811	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3P7P9	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:38235	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM