LOC102154391 (zinc finger protein 77-like) - Rat Genome Database

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Gene: LOC102154391 (zinc finger protein 77-like) Canis lupus familiaris
Analyze
Symbol: LOC102154391
Name: zinc finger protein 77-like
RGD ID: 12086429
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger protein 669-like; zinc finger protein 709-like
RGD Orthologs
Human
Rat
Bonobo
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12056,316,947 - 56,320,526 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2056,109,922 - 56,117,753 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02057,045,984 - 57,053,838 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12056,104,481 - 56,107,968 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02056,584,243 - 56,592,850 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02056,784,589 - 56,792,425 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC102154391
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12056,316,947 - 56,320,526 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2056,109,922 - 56,117,753 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02057,045,984 - 57,053,838 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12056,104,481 - 56,107,968 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02056,584,243 - 56,592,850 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02056,784,589 - 56,792,425 (+)NCBIUU_Cfam_GSD_1.0
ZNF57
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38192,900,928 - 2,918,473 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl192,900,928 - 2,918,473 (+)EnsemblGRCh38hg38GRCh38
GRCh37192,900,926 - 2,918,471 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36192,851,964 - 2,869,474 (+)NCBINCBI36Build 36hg18NCBI36
Celera192,836,358 - 2,852,615 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef192,671,348 - 2,688,113 (+)NCBIHuRef
CHM1_1192,900,483 - 2,918,091 (+)NCBICHM1_1
T2T-CHM13v2.0192,876,161 - 2,892,540 (+)NCBIT2T-CHM13v2.0
LOC130046242
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr878,663,437 - 8,669,068 (-)NCBIGRCr8
mRatBN7.278,012,665 - 8,018,178 (-)NCBImRatBN7.2mRatBN7.2
Cytogenetic Map7q11NCBI
ZNF80
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22112,227,584 - 112,228,945 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13112,232,362 - 112,233,723 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03111,373,666 - 111,375,027 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13118,293,825 - 118,295,236 (-)NCBIpanpan1.1PanPan1.1panPan2
LOC101969893
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118216,158,061 - 216,165,464 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365881,669,099 - 1,676,649 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC110261295
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1656,619,744 - 56,650,827 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZNF80
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12266,623,090 - 66,625,315 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604199,839,408 - 99,840,394 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in LOC102154391
60 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_038429207   ⟹   XP_038285135
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02057,045,984 - 57,053,838 (+)NCBI
RefSeq Acc Id: XM_038455270   ⟹   XP_038311198
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2056,109,922 - 56,117,753 (+)NCBI
RefSeq Acc Id: XM_038504740   ⟹   XP_038360668
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12056,104,481 - 56,107,968 (+)NCBI
RefSeq Acc Id: XM_038567881   ⟹   XP_038423809
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02056,784,589 - 56,792,425 (+)NCBI
RefSeq Acc Id: XM_038631998   ⟹   XP_038487926
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02056,584,243 - 56,592,850 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_038360668   ⟸   XM_038504740
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038487926   ⟸   XM_038631998
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038285135   ⟸   XM_038429207
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038311198   ⟸   XM_038455270
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038423809   ⟸   XM_038567881
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC102154391 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-12 LOC102154391  zinc finger protein 77-like  LOC102154391  zinc finger protein 709-like  Symbol and/or name change 5135510 APPROVED
2017-09-12 LOC102154391  zinc finger protein 709-like    zinc finger protein 669-like  Symbol and/or name change 5135510 APPROVED