LOC478702 (tubulin beta-2B chain) - Rat Genome Database

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Gene: LOC478702 (tubulin beta-2B chain) Canis lupus familiaris
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Symbol: LOC478702 (Ensembl: TUBB2B)
Name: tubulin beta-2B chain (Ensembl:tubulin beta 2B class IIb)
RGD ID: 12085918
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); nucleotide binding (inferred); INVOLVED IN embryonic brain development (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); bilateral perisylvian polymicrogyria (ortholog); carcinoma (ortholog); FOUND IN Schaffer collateral - CA1 synapse (ortholog); INTERACTS WITH mocetinostat
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TUBB2B; tubulin beta 2B class IIb; tubulin beta-2A chain; tubulin, beta 2B class IIb
RGD Orthologs
Human
Mouse
Rat
Pig
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1353,494,982 - 3,498,274 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl353,495,277 - 3,498,248 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha353,505,910 - 3,509,204 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0353,555,009 - 3,558,303 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl353,505,153 - 3,558,836 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1353,431,487 - 3,434,784 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0353,453,807 - 3,457,098 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0354,786,156 - 4,789,450 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
mocetinostat  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC478702
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1353,494,982 - 3,498,274 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl353,495,277 - 3,498,248 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha353,505,910 - 3,509,204 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0353,555,009 - 3,558,303 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl353,505,153 - 3,558,836 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1353,431,487 - 3,434,784 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0353,453,807 - 3,457,098 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0354,786,156 - 4,789,450 (-)NCBIUU_Cfam_GSD_1.0
TUBB2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3863,224,277 - 3,227,653 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl63,223,324 - 3,231,730 (-)EnsemblGRCh38hg38GRCh38
GRCh3763,224,511 - 3,227,887 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3663,169,510 - 3,172,870 (-)NCBINCBI36Build 36hg18NCBI36
Celera64,453,394 - 4,456,867 (-)NCBICelera
Cytogenetic Map6p25.2NCBI
HuRef63,102,307 - 3,105,779 (-)NCBIHuRef
CHM1_163,226,964 - 3,230,437 (-)NCBICHM1_1
T2T-CHM13v2.063,092,680 - 3,096,055 (-)NCBIT2T-CHM13v2.0
Tubb2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391334,310,991 - 34,314,337 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1334,310,731 - 34,314,449 (-)EnsemblGRCm39 Ensembl
GRCm381334,127,008 - 34,130,354 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1334,126,748 - 34,130,466 (-)EnsemblGRCm38mm10GRCm38
MGSCv371334,218,877 - 34,222,223 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361334,134,473 - 34,137,819 (-)NCBIMGSCv36mm8
Celera1335,261,212 - 35,264,555 (-)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1314.04NCBI
Tubb2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81730,953,086 - 30,956,133 (+)NCBIGRCr8
mRatBN7.21730,747,734 - 30,750,781 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1730,747,734 - 30,750,638 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1730,560,900 - 30,563,955 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01732,164,652 - 32,167,707 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01730,556,638 - 30,559,693 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01731,441,640 - 31,444,687 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1731,441,630 - 31,482,759 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01733,336,065 - 33,339,112 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41737,087,922 - 37,090,969 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11737,142,086 - 37,145,700 (+)NCBI
Celera1730,312,117 - 30,315,164 (+)NCBICelera
Cytogenetic Map17p12NCBI
LOC100624785
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl71,910,269 - 1,914,761 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.171,910,585 - 1,914,668 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.271,975,079 - 1,987,569 (-)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in LOC478702
44 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High 1
Medium 5 5 22 6 6 6 6 1 11 10 6
Low 5 8
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000014871   ⟹   ENSCAFP00000013762
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl353,495,277 - 3,498,248 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845031210   ⟹   ENSCAFP00845024431
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl353,505,153 - 3,558,836 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845031242   ⟹   ENSCAFP00845024456
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl353,505,153 - 3,558,180 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845031287   ⟹   ENSCAFP00845024491
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl353,505,153 - 3,509,889 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845031331   ⟹   ENSCAFP00845024528
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl353,505,347 - 3,558,836 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845031366   ⟹   ENSCAFP00845024558
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl353,505,347 - 3,558,836 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845031403   ⟹   ENSCAFP00845024590
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl353,505,347 - 3,558,180 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845031446   ⟹   ENSCAFP00845024624
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl353,553,827 - 3,558,257 (-)Ensembl
RefSeq Acc Id: XM_038446245   ⟹   XP_038302173
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0353,555,009 - 3,558,303 (-)NCBI
RefSeq Acc Id: XM_038520419   ⟹   XP_038376347
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1353,431,487 - 3,434,784 (-)NCBI
RefSeq Acc Id: XM_038584041   ⟹   XP_038439969
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0354,786,156 - 4,789,450 (-)NCBI
RefSeq Acc Id: XM_038648454   ⟹   XP_038504382
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0353,453,807 - 3,457,098 (-)NCBI
RefSeq Acc Id: XM_851058   ⟹   XP_856151
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1353,494,982 - 3,498,274 (-)NCBI
Dog10K_Boxer_Tasha353,505,910 - 3,509,204 (-)NCBI
Sequence:
RefSeq Acc Id: XP_856151   ⟸   XM_851058
- UniProtKB: A0A8C0JHF7 (UniProtKB/TrEMBL),   A0A8I3P982 (UniProtKB/TrEMBL),   A0A8P0TTK7 (UniProtKB/TrEMBL),   A0A8C0RG40 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000013762   ⟸   ENSCAFT00000014871
RefSeq Acc Id: XP_038376347   ⟸   XM_038520419
RefSeq Acc Id: XP_038504382   ⟸   XM_038648454
RefSeq Acc Id: XP_038302173   ⟸   XM_038446245
- UniProtKB: A0A8C0JHF7 (UniProtKB/TrEMBL),   A0A8I3P982 (UniProtKB/TrEMBL),   A0A8P0TTK7 (UniProtKB/TrEMBL),   A0A8C0RG40 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038439969   ⟸   XM_038584041
- UniProtKB: A0A8C0JHF7 (UniProtKB/TrEMBL),   A0A8C0RG40 (UniProtKB/TrEMBL),   A0A8I3P982 (UniProtKB/TrEMBL),   A0A8P0TTK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845024624   ⟸   ENSCAFT00845031446
RefSeq Acc Id: ENSCAFP00845024491   ⟸   ENSCAFT00845031287
RefSeq Acc Id: ENSCAFP00845024528   ⟸   ENSCAFT00845031331
RefSeq Acc Id: ENSCAFP00845024590   ⟸   ENSCAFT00845031403
RefSeq Acc Id: ENSCAFP00845024431   ⟸   ENSCAFT00845031210
RefSeq Acc Id: ENSCAFP00845024558   ⟸   ENSCAFT00845031366
RefSeq Acc Id: ENSCAFP00845024456   ⟸   ENSCAFT00845031242

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009337 Ensembl
  ENSCAFG00000058032 UniProtKB/TrEMBL
  ENSCAFG00030009090 UniProtKB/TrEMBL
  ENSCAFG00845017639 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000014870.5 UniProtKB/TrEMBL
  ENSCAFT00000102256.1 UniProtKB/TrEMBL
  ENSCAFT00030017036.1 UniProtKB/TrEMBL
  ENSCAFT00845031366.1 UniProtKB/TrEMBL
  ENSCAFT00845031403.1 UniProtKB/TrEMBL
  ENSCAFT00845031446 ENTREZGENE
  ENSCAFT00845031446.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.600 UniProtKB/TrEMBL
  3.30.1330.20 UniProtKB/TrEMBL
  3.40.50.1440 UniProtKB/TrEMBL
InterPro Beta-tubulin_BS UniProtKB/TrEMBL
  Beta_tubulin UniProtKB/TrEMBL
  Tub_FtsZ_C UniProtKB/TrEMBL
  Tubulin UniProtKB/TrEMBL
  Tubulin/FtsZ-like_C UniProtKB/TrEMBL
  Tubulin/FtsZ_2-layer-sand-dom UniProtKB/TrEMBL
  Tubulin/FtsZ_GTPase_sf UniProtKB/TrEMBL
  Tubulin_C UniProtKB/TrEMBL
  Tubulin_CS UniProtKB/TrEMBL
  Tubulin_FtsZ_GTPase UniProtKB/TrEMBL
KEGG Report cfa:478702 UniProtKB/TrEMBL
NCBI Gene LOC478702 ENTREZGENE
PANTHER PTHR11588 UniProtKB/TrEMBL
  TUBULIN BETA-2A CHAIN UniProtKB/TrEMBL
  TUBULIN BETA-2B CHAIN UniProtKB/TrEMBL
Pfam Tubulin UniProtKB/TrEMBL
  Tubulin_C UniProtKB/TrEMBL
PRINTS BETATUBULIN UniProtKB/TrEMBL
  TUBULIN UniProtKB/TrEMBL
PROSITE TUBULIN UniProtKB/TrEMBL
  TUBULIN_B_AUTOREG UniProtKB/TrEMBL
SMART Tubulin UniProtKB/TrEMBL
  Tubulin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF52490 UniProtKB/TrEMBL
  SSF55307 UniProtKB/TrEMBL
UniProt A0A8C0JHF7 ENTREZGENE
  A0A8C0RG40 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NUB0_CANLF UniProtKB/TrEMBL
  A0A8I3P548_CANLF UniProtKB/TrEMBL
  A0A8I3P982 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NBH7_CANLF UniProtKB/TrEMBL
  A0A8P0TTK7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-12 LOC478702  tubulin beta-2B chain  TUBB2B  tubulin beta 2B class IIb  Symbol and/or name change 5135510 APPROVED
2017-09-12 TUBB2B  tubulin beta 2B class IIb  LOC478702  tubulin beta-2B chain  Symbol and/or name change 5135510 APPROVED