SHISA7 (shisa family member 7) - Rat Genome Database

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Gene: SHISA7 (shisa family member 7) Canis lupus familiaris
Analyze
Symbol: SHISA7
Name: shisa family member 7
RGD ID: 12084991
Description: ENCODES a protein that exhibits GABA receptor binding (ortholog); ionotropic glutamate receptor binding (ortholog); INVOLVED IN gamma-aminobutyric acid receptor clustering (ortholog); gamma-aminobutyric acid signaling pathway (ortholog); memory (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); asymmetric, glutamatergic, excitatory synapse (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC111097351; LOW QUALITY PROTEIN: protein shisa-7; myb-related transcription factor, partner of profilin-like; protein shisa-7; shisa homolog 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11102,260,917 - 102,270,388 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1102,261,484 - 102,268,179 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1102,310,808 - 102,328,742 (+)NCBI
ROS_Cfam_1.01102,907,280 - 102,925,221 (+)NCBI
ROS_Cfam_1.0 Ensembl1102,905,126 - 102,925,247 (+)Ensembl
UMICH_Zoey_3.11102,544,484 - 102,562,438 (+)NCBI
UNSW_CanFamBas_1.01102,256,598 - 102,274,537 (+)NCBI
UU_Cfam_GSD_1.01103,019,825 - 103,037,770 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
SHISA7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11102,260,917 - 102,270,388 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1102,261,484 - 102,268,179 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1102,310,808 - 102,328,742 (+)NCBI
ROS_Cfam_1.01102,907,280 - 102,925,221 (+)NCBI
ROS_Cfam_1.0 Ensembl1102,905,126 - 102,925,247 (+)Ensembl
UMICH_Zoey_3.11102,544,484 - 102,562,438 (+)NCBI
UNSW_CanFamBas_1.01102,256,598 - 102,274,537 (+)NCBI
UU_Cfam_GSD_1.01103,019,825 - 103,037,770 (+)NCBI
SHISA7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1955,428,740 - 55,443,300 (-)EnsemblGRCh38hg38GRCh38
GRCh381955,428,740 - 55,443,300 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371955,940,105 - 55,954,230 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361960,636,335 - 60,654,784 (-)NCBINCBI36hg18NCBI36
Celera1952,980,996 - 53,005,709 (-)NCBI
Cytogenetic Map19q13.42NCBI
HuRef1952,261,714 - 52,265,905 (-)NCBIHuRef
CHM1_11955,933,703 - 55,947,827 (-)NCBICHM1_1
Shisa7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3974,828,551 - 4,847,788 (-)NCBIGRCm39mm39
GRCm39 Ensembl74,828,551 - 4,847,695 (-)Ensembl
GRCm3874,825,551 - 4,844,866 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl74,825,552 - 4,844,696 (-)EnsemblGRCm38mm10GRCm38
MGSCv3774,777,154 - 4,796,298 (-)NCBIGRCm37mm9NCBIm37
MGSCv3674,431,561 - 4,442,291 (-)NCBImm8
Celera74,563,009 - 4,582,132 (-)NCBICelera
Cytogenetic Map7A1NCBI
Shisa7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2168,993,900 - 69,012,943 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl168,994,025 - 69,012,943 (+)Ensembl
Rnor_6.0172,545,413 - 72,564,513 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl172,545,596 - 72,564,513 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0175,971,937 - 75,990,945 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4167,710,526 - 67,729,443 (+)NCBIRGSC3.4rn4RGSC3.4
Celera168,111,510 - 68,130,334 (-)NCBICelera
Cytogenetic Map1q12NCBI
Shisa7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955567840,193 - 845,093 (+)NCBIChiLan1.0ChiLan1.0
SHISA7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11961,165,673 - 61,175,020 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01952,475,852 - 52,496,819 (-)NCBIMhudiblu_PPA_v0panPan3
Shisa7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093491,878,026 - 1,895,150 (+)NCBI
SpeTri2.0NW_004936886664,075 - 675,008 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SHISA7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl659,582,708 - 59,604,212 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1659,582,706 - 59,601,979 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SHISA7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1648,028,539 - 48,049,478 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045677,739 - 697,961 (-)NCBIVero_WHO_p1.0
Shisa7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248321,898,049 - 1,909,155 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 8 1
Low 3 5 10 3 6 6 4 8 8 5
Below cutoff 2 8 6 3 6 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000045226   ⟹   ENSCAFP00000036623
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1102,261,484 - 102,268,179 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000049048   ⟹   ENSCAFP00000042764
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1102,261,484 - 102,268,179 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845001458   ⟹   ENSCAFP00845001139
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1102,905,126 - 102,925,235 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845001466   ⟹   ENSCAFP00845001147
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1102,905,126 - 102,925,235 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845001471   ⟹   ENSCAFP00845001152
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1102,914,522 - 102,925,247 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845001479   ⟹   ENSCAFP00845001160
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1102,914,522 - 102,925,247 (+)Ensembl
RefSeq Acc Id: XM_038467022   ⟹   XP_038322950
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11102,544,484 - 102,562,438 (+)NCBI
RefSeq Acc Id: XM_038527751   ⟹   XP_038383679
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01103,019,825 - 103,037,770 (+)NCBI
RefSeq Acc Id: XM_038592049   ⟹   XP_038447977
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01102,256,598 - 102,274,537 (+)NCBI
RefSeq Acc Id: XM_038637148   ⟹   XP_038493076
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1102,310,808 - 102,328,742 (+)NCBI
RefSeq Acc Id: XM_038655824   ⟹   XP_038511752
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01102,907,280 - 102,925,221 (+)NCBI
Reference Sequences
RefSeq Acc Id: ENSCAFP00000042764   ⟸   ENSCAFT00000049048
RefSeq Acc Id: ENSCAFP00000036623   ⟸   ENSCAFT00000045226
RefSeq Acc Id: XP_038322950   ⟸   XM_038467022
RefSeq Acc Id: XP_038447977   ⟸   XM_038592049
RefSeq Acc Id: XP_038511752   ⟸   XM_038655824
RefSeq Acc Id: XP_038493076   ⟸   XM_038637148
RefSeq Acc Id: XP_038383679   ⟸   XM_038527751
RefSeq Acc Id: ENSCAFP00845001160   ⟸   ENSCAFT00845001479
RefSeq Acc Id: ENSCAFP00845001152   ⟸   ENSCAFT00845001471
RefSeq Acc Id: ENSCAFP00845001139   ⟸   ENSCAFT00845001458
RefSeq Acc Id: ENSCAFP00845001147   ⟸   ENSCAFT00845001466


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000032489 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845000868 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000036623 UniProtKB/TrEMBL
  ENSCAFP00000042764 UniProtKB/TrEMBL
  ENSCAFP00845001139 ENTREZGENE
Ensembl Transcript ENSCAFT00000045226 UniProtKB/TrEMBL
  ENSCAFT00000049048 UniProtKB/TrEMBL
  ENSCAFT00845001458 ENTREZGENE
InterPro Shisa UniProtKB/TrEMBL
NCBI Gene SHISA7 ENTREZGENE
PANTHER PTHR31774 UniProtKB/TrEMBL
UniProt J9NT51_CANLF UniProtKB/TrEMBL
  J9NTY6_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:53978 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-14 SHISA7  shisa family member 7  LOC111097351  myb-related transcription factor, partner of profilin-like  Data Merged 737654 PROVISIONAL