NTN1 (netrin 1) - Rat Genome Database

Name: NTN1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: NTN1 (netrin 1) Canis lupus familiaris

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Symbol:

NTN1

Name:

netrin 1

RGD ID:

12084785

Description:

INVOLVED IN anterior/posterior axon guidance (ortholog); axon guidance (ortholog); axonogenesis (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); brain edema (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN glutamatergic synapse (ortholog); synapse (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

netrin-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NTN1 (netrin 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Treefam
Mus musculus (house mouse):	Ntn1 (netrin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Ntn1 (netrin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ntn1 (netrin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NTN1 (netrin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ntn1 (netrin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NTN1 (netrin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NTN1 (netrin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ntn1 (netrin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	33,654,723 - 33,825,832 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	33,637,142 - 33,825,899 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	33,791,096 - 33,962,030 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	33,758,267 - 33,929,266 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	33,757,152 - 33,929,220 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	33,725,541 - 33,896,204 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	33,683,225 - 33,853,961 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	33,859,633 - 34,030,422 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alzheimer's disease (ISO)

brain edema (ISO)

Chemical and Drug Induced Liver Injury (ISO)

cleft lip (ISO)

Mirror Movements 4 (ISO)

Neurobehavioral Manifestations (ISO)

orofacial cleft 1 (ISO)

Oxygen-Induced Retinopathy (ISO)

Subarachnoid Hemorrhage (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anterior/posterior axon guidance (IEA,ISO)

axon guidance (IEA,ISO)

axonogenesis (IEA,ISO)

Cdc42 protein signal transduction (ISO)

cell population proliferation (IEA,ISO)

cell-cell adhesion (IEA,ISO)

chemorepulsion of axon (IEA)

glial cell proliferation (IEA,ISO)

inner ear morphogenesis (IEA,ISO)

mammary gland development (IEA,ISO)

mammary gland duct morphogenesis (IEA,ISO)

motor neuron migration (IEA,ISO)

negative regulation of axon extension (IEA,ISO)

neuron migration (IEA,ISO)

nuclear migration (IEA,ISO)

positive regulation of axon extension (IEA,ISO)

positive regulation of cell motility (ISO)

positive regulation of glial cell proliferation (IEA,ISO)

Ras protein signal transduction (ISO)

regulation of cell migration (IEA,ISO)

regulation of glial cell migration (IEA,ISO)

regulation of synapse assembly (IEA)

substrate-dependent cell migration, cell extension (ISO)

Cellular Component

actin cytoskeleton (IEA)

basement membrane (IEA)

cytoplasm (IEA)

cytosol (IEA)

extracellular region (IEA)

glutamatergic synapse (IEA,ISO)

nucleoplasm (IEA)

synapse (IEA,ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

NTN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	33,654,723 - 33,825,832 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	33,637,142 - 33,825,899 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	33,791,096 - 33,962,030 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	33,758,267 - 33,929,266 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	33,757,152 - 33,929,220 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	33,725,541 - 33,896,204 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	33,683,225 - 33,853,961 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	33,859,633 - 34,030,422 (+)	NCBI		UU_Cfam_GSD_1.0

NTN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	9,003,087 - 9,244,000 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	9,021,510 - 9,244,000 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	8,924,827 - 9,147,317 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	8,865,584 - 9,088,042 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	8,865,583 - 9,084,078	NCBI
Celera	17	8,956,718 - 9,179,095 (+)	NCBI		Celera
Cytogenetic Map	17	p13.1	NCBI
HuRef	17	8,823,748 - 9,046,260 (+)	NCBI		HuRef
CHM1_1	17	8,934,056 - 9,156,348 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	8,910,268 - 9,150,998 (+)	NCBI		T2T-CHM13v2.0

Ntn1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	68,100,190 - 68,277,652 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	68,100,190 - 68,291,649 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	68,209,364 - 68,386,826 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	68,209,364 - 68,400,823 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	68,022,866 - 68,200,328 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	68,029,201 - 68,202,315 (-)	NCBI		MGSCv36	mm8
Celera	11	75,146,897 - 75,324,142 (-)	NCBI		Celera
Cytogenetic Map	11	B3	NCBI
cM Map	11	41.45	NCBI

Ntn1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	53,398,852 - 53,597,595 (-)	NCBI		GRCr8
mRatBN7.2	10	52,899,933 - 53,098,591 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	52,899,934 - 53,085,326 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	57,569,983 - 57,744,352 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	57,059,000 - 57,233,370 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	52,559,808 - 52,740,213 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	54,761,925 - 54,982,072 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	54,761,871 - 54,967,585 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	54,507,464 - 54,725,989 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	54,950,521 - 55,133,536 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	54,964,143 - 55,147,159 (-)	NCBI
Celera	10	52,078,465 - 52,253,812 (-)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

Ntn1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955467	7,794,735 - 7,991,695 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955467	7,795,175 - 7,991,597 (-)	NCBI	ChiLan1.0	ChiLan1.0

NTN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	64,503,878 - 64,726,212 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	69,313,754 - 69,536,000 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	42,409,797 - 42,631,930 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	47,148,384 - 47,368,127 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	47,152,225 - 47,368,134 (-)	Ensembl	panpan1.1		panPan2

Ntn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	48,672,178 - 48,849,151 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936595	2,146,366 - 2,323,399 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936595	2,146,371 - 2,323,346 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NTN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	54,089,472 - 54,292,193 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	54,089,444 - 54,292,191 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	56,822,597 - 57,056,391 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NTN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	8,359,682 - 8,603,231 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	8,379,129 - 8,603,223 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	12,748,497 - 13,022,123 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ntn1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624786	11,526,050 - 11,703,258 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624786	11,508,643 - 11,707,060 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in NTN1
1782 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038475681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038536860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038601011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038665579	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_845211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000027580 ⟹ ENSCAFP00000025650

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	5	33,637,142 - 33,825,899 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000027581 ⟹ ENSCAFP00000025651

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	5	33,637,142 - 33,825,899 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845002263 ⟹ ENSCAFP00845001791

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	5	33,757,152 - 33,929,220 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845002275 ⟹ ENSCAFP00845001801

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	5	33,757,152 - 33,929,220 (+)	Ensembl

RefSeq Acc Id:

XM_038475681 ⟹ XP_038331609

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	5	33,725,541 - 33,896,204 (+)	NCBI

RefSeq Acc Id:

XM_038536860 ⟹ XP_038392788

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	5	33,859,633 - 34,030,422 (+)	NCBI

RefSeq Acc Id:

XM_038601011 ⟹ XP_038456939

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	5	33,683,225 - 33,853,961 (+)	NCBI

RefSeq Acc Id:

XM_038665579 ⟹ XP_038521507

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	5	33,758,267 - 33,929,266 (+)	NCBI

RefSeq Acc Id:

XM_845211 ⟹ XP_850304

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	33,654,723 - 33,825,832 (+)	NCBI
Dog10K_Boxer_Tasha	5	33,791,096 - 33,962,030 (+)	NCBI

Sequence:

show sequence

GACTCCTCGGCGCGGCGCGGCGGGGCCGGGGCAGGCTGGACGCGGCATGATGCGCGCCGTGTGG
GAGGCGCTGGCGGCGCTGGCGGCGGTGGCGTGCCTGGTGGGCGCGGTGCGCGGCGGGCCCGGGC
TCAGCGTGTTCTCGGGCCAGGCGGCGCAGCCCGACCCCTGCTCGGACGAGAACGGCCACCCGCG
CCGCTGCATCCCGGACTTCGTCAACGCGGCCTTCGGCAAGGACGTGCGCGTGTCCAGCACCTGC
GGCCGGCCCCCGGCGCGCTACTGCGTGGTCAGCGAGCGCGGCGAGGAGCGGCTGCGCTCCTGCC
ACCTCTGCAACGCGTCGGACCCCAAGAAGGCGCACCCGCCCGCCTTCCTCACCGACCTCAACAA
CCCGCACAACCTGACGTGCTGGCAGTCCGAGAACTACCTGCAGTTCCCGCACAACGTCACGCTC
ACGCTGTCGCTCGGCAAGAAGTTCGAGGTGACCTACGTGAGCCTGCAGTTCTGCTCGCCGCGGC
CCGAGTCCATGGCCATCTACAAGTCCATGGACTACGGGCGCACGTGGGTGCCCTTCCAGTTCTA
CTCCACGCAGTGCCGCAAGATGTACAACCGGCCGCACCGCGCGCCCATCACCAAGCAGAACGAG
CAGGAGGCCGTGTGCACCGACTCGCACACCGACATGCGCCCGCTCTCGGGCGGCCTCATCGCCT
TCAGCACGCTGGACGGGCGGCCCTCGGCGCACGACTTCGACAACTCGCCGGTCCTGCAGGACTG
GGTCACGGCCACCGACATCCGCGTGGCCTTCAGCCGCCTGCACACGTTCGGCGACGAGAACGAG
GACGACTCGGAGCTGGCGCGCGACTCGTACTTCTACGCCGTGTCCGACCTGCAGGTGGGCGGCC
GCTGCAAGTGCAACGGCCACGCCGCCCGCTGCGTGCGCGACCGCGACGACAGCCTGGTGTGCGA
CTGCAGGCACAACACGGCCGGCCCGGAGTGCGACCGCTGCAAGCCGTTCCACTACGACCGGCCC
TGGCAGCGCGCCACGGCCCGCGAGGCCAACGAGTGCGTGGCCTGTAACTGCAACCTGCATGCCC
GGCGCTGCCGCTTCAACATGGAGCTGTACAAGCTGTCGGGGCGCAAGAGCGGGGGCGTCTGTCT
CAACTGCCGCCACAACACTGCAGGCCGCCACTGCCACTACTGCAAGGAGGGCTACTACCGCGAC
ATGGGCAAGCCCATCACCCACCGGAAGGCCTGCAAAGCCTGCGATTGCCACCCCGTGGGCGCTG
CTGGCAAAACCTGCAACCAGACCACCGGCCAGTGTCCCTGCAAGGACGGCGTGACGGGCATCAC
CTGCAACCGCTGTGCCAAGGGCTACCAGCAGAGCCGCTCGCCCATCGCCCCCTGCATAAAGATC
CCCGTGGCACCCCCGACCACTGCAGCCAGCAGCGTGGAGGAGCCAGAAGACTGTGATTCCTACT
GCAAGGCTTCCAAAGGAAAGCTGAAGATTAACATGAAAAAGTATTGCAGGAAGGACTATGCCGT
CCAGATCCACATCCTGAAGGCGGACAAGGCAGAGGACTGGTGGAAGTTCACGGTGAACATCATC
TCCNGGTACAAGCAGGGCACGAGCCGCATCCGCCGCGGGGACCAGAGCCTGTGGATCCGCTCGC
GGGACATCGCCTGCAAGTGCCCCAAAATCAAGCCCCTCAAGAAGTACCTGCTGCTGGGCAACGC
CGAGGACTCGCCCGACCAGAGCGGCATCGTGGCGGACAAGAGCAGCCTGGTGATCCAGTGGCGG
GACACGTGGGCGCGGCGGCTGCGCAAGTTCCAGCAGCGCGAGAAGAAGGGCAAGTGCAAGAAGG
CCTAGCGCGGGGGCTGCGGCGCCGGGTGGGCGGGGCCGGGCGGCGGGGCGGG

hide sequence

Protein Sequences


Protein RefSeqs	XP_038331609	(Get FASTA)	NCBI Sequence Viewer
	XP_038392788	(Get FASTA)	NCBI Sequence Viewer
	XP_038456939	(Get FASTA)	NCBI Sequence Viewer
	XP_038521507	(Get FASTA)	NCBI Sequence Viewer
	XP_850304	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000025650.4
	ENSCAFP00000025651.5
	ENSCAFP00030001444.1
	ENSCAFP00845001791
	ENSCAFP00845001791.1
	ENSCAFP00845001801.1

RefSeq Acc Id:

XP_850304 ⟸ XM_845211

- UniProtKB:

A0A8C0K1V0 (UniProtKB/TrEMBL), A0A8C0LYS4 (UniProtKB/TrEMBL), A0A8I3MFH5 (UniProtKB/TrEMBL), A0A8I3MDJ9 (UniProtKB/TrEMBL), A0A8P0SLN8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMRAVWEALAALAAVACLVGAVRGGPGLSVFSGQAAQPDPCSDENGHPRRCIPDFVNAAFGKDV
RVSSTCGRPPARYCVVSERGEERLRSCHLCNASDPKKAHPPAFLTDLNNPHNLTCWQSENYLQF
PHNVTLTLSLGKKFEVTYVSLQFCSPRPESMAIYKSMDYGRTWVPFQFYSTQCRKMYNRPHRAP
ITKQNEQEAVCTDSHTDMRPLSGGLIAFSTLDGRPSAHDFDNSPVLQDWVTATDIRVAFSRLHT
FGDENEDDSELARDSYFYAVSDLQVGGRCKCNGHAARCVRDRDDSLVCDCRHNTAGPECDRCKP
FHYDRPWQRATAREANECVACNCNLHARRCRFNMELYKLSGRKSGGVCLNCRHNTAGRHCHYCK
EGYYRDMGKPITHRKACKACDCHPVGAAGKTCNQTTGQCPCKDGVTGITCNRCAKGYQQSRSPI
APCIKIPVAPPTTAASSVEEPEDCDSYCKASKGKLKINMKKYCRKDYAVQIHILKADKAEDWWK
FTVNIISXYKQGTSRIRRGDQSLWIRSRDIACKCPKIKPLKKYLLLGNAEDSPDQSGIVADKSS
LVIQWRDTWARRLRKFQQREKKGKCKKA

hide sequence

Ensembl Acc Id:

ENSCAFP00000025651 ⟸ ENSCAFT00000027581

Ensembl Acc Id:

ENSCAFP00000025650 ⟸ ENSCAFT00000027580

RefSeq Acc Id:

XP_038331609 ⟸ XM_038475681

RefSeq Acc Id:

XP_038456939 ⟸ XM_038601011

RefSeq Acc Id:	XP_038521507 ⟸ XM_038665579
- UniProtKB:	A0A8C0K1V0 (UniProtKB/TrEMBL), A0A8C0LYS4 (UniProtKB/TrEMBL), A0A8I3MFH5 (UniProtKB/TrEMBL), A0A8I3MDJ9 (UniProtKB/TrEMBL), A0A8P0SLN8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038392788 ⟸ XM_038536860
- UniProtKB:	A0A8I3MDJ9 (UniProtKB/TrEMBL), A0A8P0SLN8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845001801 ⟸ ENSCAFT00845002275

Ensembl Acc Id:

ENSCAFP00845001791 ⟸ ENSCAFT00845002263

Protein Domains

Laminin EGF-like Laminin N-terminal NTR

Promoters

RGD ID:

13683249

Promoter ID:

EPDNEW_C1315

Type:

single initiation site

Name:

NTN1_1

Description:

netrin 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_C1316

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	33,654,657 - 33,654,717	EPDNEW

RGD ID:

13683248

Promoter ID:

EPDNEW_C1316

Type:

single initiation site

Name:

NTN1_2

Description:

netrin 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_C1315

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	33,654,785 - 33,654,845	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000017403	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030000945	UniProtKB/TrEMBL
	ENSCAFG00845001314	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000027580.6	UniProtKB/TrEMBL
	ENSCAFT00000027581.5	UniProtKB/TrEMBL
	ENSCAFT00030001618.1	UniProtKB/TrEMBL
	ENSCAFT00845002263	ENTREZGENE
	ENSCAFT00845002263.1	UniProtKB/TrEMBL
	ENSCAFT00845002275.1	UniProtKB/TrEMBL
Gene3D-CATH	2.40.50.120	UniProtKB/TrEMBL
	Galactose-binding domain-like	UniProtKB/TrEMBL
	Laminin	UniProtKB/TrEMBL
InterPro	Galactose-bd-like_sf	UniProtKB/TrEMBL
	Laminin/Netrin_ECM	UniProtKB/TrEMBL
	Laminin_N	UniProtKB/TrEMBL
	LE_dom	UniProtKB/TrEMBL
	Netrin_domain	UniProtKB/TrEMBL
	Netrin_module_non-TIMP	UniProtKB/TrEMBL
	TIMP-like_OB-fold	UniProtKB/TrEMBL
NCBI Gene	NTN1	ENTREZGENE
PANTHER	LAMININ SUBUNIT GAMMA-1	UniProtKB/TrEMBL
	NETRIN-1	UniProtKB/TrEMBL
	NETRIN/LAMININ-RELATED	UniProtKB/TrEMBL
Pfam	Laminin_EGF	UniProtKB/TrEMBL
	Laminin_N	UniProtKB/TrEMBL
	NTR	UniProtKB/TrEMBL
PROSITE	EGF_LAM_1	UniProtKB/TrEMBL
	EGF_LAM_2	UniProtKB/TrEMBL
	LAMININ_NTER	UniProtKB/TrEMBL
	NTR	UniProtKB/TrEMBL
SMART	C345C	UniProtKB/TrEMBL
	EGF_Lam	UniProtKB/TrEMBL
	LamNT	UniProtKB/TrEMBL
Superfamily-SCOP	EGF/Laminin	UniProtKB/TrEMBL
	SSF49785	UniProtKB/TrEMBL
	SSF50242	UniProtKB/TrEMBL
UniProt	A0A8C0K1V0	ENTREZGENE
	A0A8C0LYS4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MDJ9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MFH5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0SLN8	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:44007	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

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