NR1H3 (nuclear receptor subfamily 1 group H member 3) - Rat Genome Database

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Gene: NR1H3 (nuclear receptor subfamily 1 group H member 3) Canis lupus familiaris
Analyze
Symbol: NR1H3
Name: nuclear receptor subfamily 1 group H member 3
RGD ID: 12083136
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); nuclear receptor activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN bile acid signaling pathway (ortholog); cellular lipid metabolic process (ortholog); insulin receptor signaling pathway (ortholog); PARTICIPATES IN bile acid signaling pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); cholestasis (ortholog); congenital disorder of glycosylation type IIc (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: oxysterols receptor LXR-alpha
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11842,333,173 - 42,346,152 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1842,333,202 - 42,341,236 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1841,061,865 - 41,074,852 (-)NCBI
ROS_Cfam_1.01842,987,642 - 43,000,646 (-)NCBI
UMICH_Zoey_3.11842,473,538 - 42,486,527 (-)NCBI
UNSW_CanFamBas_1.01842,029,130 - 42,042,123 (-)NCBI
UU_Cfam_GSD_1.01842,758,228 - 42,771,525 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
apoptotic cell clearance  (IEA)
bile acid signaling pathway  (ISO)
cell differentiation  (IBA)
cellular lipid metabolic process  (ISO)
cellular response to lipopolysaccharide  (IEA)
cholesterol homeostasis  (IEA)
insulin receptor signaling pathway  (ISO)
intracellular receptor signaling pathway  (IEA)
lipid homeostasis  (ISO)
lipid metabolic process  (IEA,ISO)
negative regulation of cholesterol storage  (IEA)
negative regulation of cold-induced thermogenesis  (IEA)
negative regulation of inflammatory response  (IBA)
negative regulation of lipid transport  (IEA)
negative regulation of macrophage activation  (IEA)
negative regulation of pancreatic juice secretion  (IEA)
negative regulation of pinocytosis  (IEA)
negative regulation of proteolysis  (IEA)
negative regulation of response to endoplasmic reticulum stress  (IEA)
negative regulation of secretion of lysosomal enzymes  (IEA)
negative regulation of transcription by RNA polymerase II  (IBA)
negative regulation of transcription, DNA-templated  (ISO)
phosphatidylcholine acyl-chain remodeling  (IEA)
positive regulation of cellular protein metabolic process  (IEA)
positive regulation of cholesterol efflux  (IEA)
positive regulation of cholesterol transport  (ISO)
positive regulation of fatty acid biosynthetic process  (IEA)
positive regulation of lipoprotein lipase activity  (IEA)
positive regulation of toll-like receptor 4 signaling pathway  (IEA)
positive regulation of transcription by RNA polymerase II  (IBA)
positive regulation of transcription, DNA-templated  (ISO)
positive regulation of triglyceride biosynthetic process  (IEA)
regulation of transcription, DNA-templated  (IEA,ISO)
response to cholesterol  (ISO)
response to nutrient levels  (ISO)
response to progesterone  (IEA)
sterol homeostasis  (ISO)
triglyceride homeostasis  (IEA)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
NR1H3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11842,333,173 - 42,346,152 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1842,333,202 - 42,341,236 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1841,061,865 - 41,074,852 (-)NCBI
ROS_Cfam_1.01842,987,642 - 43,000,646 (-)NCBI
UMICH_Zoey_3.11842,473,538 - 42,486,527 (-)NCBI
UNSW_CanFamBas_1.01842,029,130 - 42,042,123 (-)NCBI
UU_Cfam_GSD_1.01842,758,228 - 42,771,525 (-)NCBI
NR1H3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1147,248,300 - 47,269,033 (+)EnsemblGRCh38hg38GRCh38
GRCh381147,248,300 - 47,269,033 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371147,269,851 - 47,290,584 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361147,237,309 - 47,246,972 (+)NCBINCBI36hg18NCBI36
Build 341147,237,308 - 47,246,972NCBI
Celera1147,409,676 - 47,429,619 (+)NCBI
Cytogenetic Map11p11.2NCBI
HuRef1146,968,831 - 46,989,561 (+)NCBIHuRef
CHM1_11147,268,541 - 47,289,773 (+)NCBICHM1_1
Nr1h3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39291,014,406 - 91,033,189 (-)NCBIGRCm39mm39
GRCm39 Ensembl291,014,406 - 91,033,179 (-)Ensembl
GRCm38291,184,061 - 91,202,829 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl291,184,061 - 91,202,834 (-)EnsemblGRCm38mm10GRCm38
MGSCv37291,024,218 - 91,035,273 (-)NCBIGRCm37mm9NCBIm37
MGSCv36290,984,949 - 90,995,955 (-)NCBImm8
Celera292,568,901 - 92,580,220 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.52NCBI
Nr1h3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2377,158,808 - 77,168,907 (-)NCBI
Rnor_6.0 Ensembl380,004,130 - 80,012,750 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0380,004,130 - 80,014,197 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0386,712,883 - 86,722,950 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4375,542,211 - 75,550,793 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1375,438,551 - 75,447,172 (-)NCBI
Celera376,367,211 - 76,375,760 (-)NCBICelera
Cytogenetic Map3q24NCBI
Nr1h3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955422940,310 - 949,049 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955422940,310 - 954,170 (-)NCBIChiLan1.0ChiLan1.0
NR1H3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11147,748,452 - 47,768,672 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1147,748,353 - 47,768,672 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01147,195,122 - 47,215,277 (+)NCBIMhudiblu_PPA_v0panPan3
Nr1h3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494719,826,023 - 19,835,848 (-)NCBI
SpeTri2.0NW_0049365621,937,665 - 1,946,680 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NR1H3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl215,270,789 - 15,334,820 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1215,315,283 - 15,336,785 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2216,539,892 - 16,560,353 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NR1H3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1118,041,495 - 18,061,196 (-)NCBI
ChlSab1.1 Ensembl118,041,830 - 18,051,501 (-)Ensembl
Vero_WHO_p1.0NW_023666038115,344,981 - 115,364,565 (-)NCBI
Nr1h3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247671,459,601 - 1,473,224 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 19 6 6 6 1 6 7 6
Low 5 5 3 5 6 6 8 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014120969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014120971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014120972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014120975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014120978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014120980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022405461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022405462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022405463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022405464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022405465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022405466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022405467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022405468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038424447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038424448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038424449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038424451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038424452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038424453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038424454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038424455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038424456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038424457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038454497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038454498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038454499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038454500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038454501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038454502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038500735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038500736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038500737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038500738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038500739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038500740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038500741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038500742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038500743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038500744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038563380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038563381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038563382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038563383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038563384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038563385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038563386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038563387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038563388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038563389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038627498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038627499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038627500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038627501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038627502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038627503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038627504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038627505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038627506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038627507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000014022   ⟹   ENSCAFP00000012970
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1842,333,202 - 42,341,236 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000083207   ⟹   ENSCAFP00000053307
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1842,333,202 - 42,341,236 (-)Ensembl
RefSeq Acc Id: XM_014120969   ⟹   XP_013976444
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11842,333,312 - 42,344,511 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014120971   ⟹   XP_013976446
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11842,333,173 - 42,346,152 (-)NCBI
Dog10K_Boxer_Tasha1841,062,009 - 41,074,852 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014120972   ⟹   XP_013976447
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11842,333,312 - 42,344,511 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014120975   ⟹   XP_013976450
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11842,333,312 - 42,342,986 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014120978   ⟹   XP_013976453
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11842,333,312 - 42,346,152 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014120980   ⟹   XP_013976455
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11842,333,312 - 42,346,152 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022405461   ⟹   XP_022261169
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11842,333,312 - 42,346,152 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022405462   ⟹   XP_022261170
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11842,333,312 - 42,346,152 (-)NCBI
Dog10K_Boxer_Tasha1841,061,865 - 41,074,852 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022405463   ⟹   XP_022261171
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11842,333,312 - 42,346,152 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022405464   ⟹   XP_022261172
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11842,333,312 - 42,346,152 (-)NCBI
Dog10K_Boxer_Tasha1841,062,009 - 41,074,852 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022405465   ⟹   XP_022261173
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11842,333,312 - 42,346,152 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022405466   ⟹   XP_022261174
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11842,333,312 - 42,346,152 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022405467   ⟹   XP_022261175
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11842,333,312 - 42,346,152 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022405468   ⟹   XP_022261176
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11842,333,312 - 42,346,152 (-)NCBI
Dog10K_Boxer_Tasha1841,062,009 - 41,074,852 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038424447   ⟹   XP_038280375
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01842,987,786 - 43,000,646 (-)NCBI
RefSeq Acc Id: XM_038424448   ⟹   XP_038280376
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01842,987,786 - 43,000,646 (-)NCBI
RefSeq Acc Id: XM_038424449   ⟹   XP_038280377
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01842,987,786 - 42,998,799 (-)NCBI
RefSeq Acc Id: XM_038424451   ⟹   XP_038280379
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01842,987,786 - 42,995,535 (-)NCBI
RefSeq Acc Id: XM_038424452   ⟹   XP_038280380
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01842,987,786 - 42,995,535 (-)NCBI
RefSeq Acc Id: XM_038424453   ⟹   XP_038280381
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01842,987,786 - 43,000,646 (-)NCBI
RefSeq Acc Id: XM_038424454   ⟹   XP_038280382
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01842,987,642 - 43,000,646 (-)NCBI
RefSeq Acc Id: XM_038424455   ⟹   XP_038280383
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01842,987,786 - 43,000,646 (-)NCBI
RefSeq Acc Id: XM_038424456   ⟹   XP_038280384
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01842,987,786 - 42,995,537 (-)NCBI
RefSeq Acc Id: XM_038424457   ⟹   XP_038280385
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01842,987,642 - 43,000,646 (-)NCBI
RefSeq Acc Id: XM_038454497   ⟹   XP_038310425
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1841,062,009 - 41,074,852 (-)NCBI
RefSeq Acc Id: XM_038454498   ⟹   XP_038310426
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1841,062,009 - 41,073,018 (-)NCBI
RefSeq Acc Id: XM_038454499   ⟹   XP_038310427
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1841,062,009 - 41,069,758 (-)NCBI
RefSeq Acc Id: XM_038454500   ⟹   XP_038310428
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1841,062,009 - 41,069,758 (-)NCBI
RefSeq Acc Id: XM_038454501   ⟹   XP_038310429
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1841,062,009 - 41,069,760 (-)NCBI
RefSeq Acc Id: XM_038454502   ⟹   XP_038310430
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1841,061,865 - 41,074,852 (-)NCBI
RefSeq Acc Id: XM_038500735   ⟹   XP_038356663
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11842,473,682 - 42,486,527 (-)NCBI
RefSeq Acc Id: XM_038500736   ⟹   XP_038356664
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11842,473,682 - 42,486,527 (-)NCBI
RefSeq Acc Id: XM_038500737   ⟹   XP_038356665
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11842,473,682 - 42,484,684 (-)NCBI
RefSeq Acc Id: XM_038500738   ⟹   XP_038356666
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11842,473,682 - 42,481,430 (-)NCBI
RefSeq Acc Id: XM_038500739   ⟹   XP_038356667
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11842,473,682 - 42,481,430 (-)NCBI
RefSeq Acc Id: XM_038500740   ⟹   XP_038356668
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11842,473,682 - 42,486,527 (-)NCBI
RefSeq Acc Id: XM_038500741   ⟹   XP_038356669
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11842,473,538 - 42,486,527 (-)NCBI
RefSeq Acc Id: XM_038500742   ⟹   XP_038356670
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11842,473,682 - 42,486,527 (-)NCBI
RefSeq Acc Id: XM_038500743   ⟹   XP_038356671
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11842,473,682 - 42,481,432 (-)NCBI
RefSeq Acc Id: XM_038500744   ⟹   XP_038356672
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11842,473,538 - 42,486,527 (-)NCBI
RefSeq Acc Id: XM_038563380   ⟹   XP_038419308
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01842,758,372 - 42,771,525 (-)NCBI
RefSeq Acc Id: XM_038563381   ⟹   XP_038419309
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01842,758,372 - 42,771,525 (-)NCBI
RefSeq Acc Id: XM_038563382   ⟹   XP_038419310
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01842,758,372 - 42,769,676 (-)NCBI
RefSeq Acc Id: XM_038563383   ⟹   XP_038419311
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01842,758,372 - 42,766,412 (-)NCBI
RefSeq Acc Id: XM_038563384   ⟹   XP_038419312
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01842,758,372 - 42,766,415 (-)NCBI
RefSeq Acc Id: XM_038563385   ⟹   XP_038419313
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01842,758,372 - 42,771,525 (-)NCBI
RefSeq Acc Id: XM_038563386   ⟹   XP_038419314
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01842,758,228 - 42,771,525 (-)NCBI
RefSeq Acc Id: XM_038563387   ⟹   XP_038419315
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01842,758,372 - 42,771,525 (-)NCBI
RefSeq Acc Id: XM_038563388   ⟹   XP_038419316
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01842,758,372 - 42,766,415 (-)NCBI
RefSeq Acc Id: XM_038563389   ⟹   XP_038419317
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01842,758,228 - 42,771,525 (-)NCBI
RefSeq Acc Id: XM_038627498   ⟹   XP_038483426
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01842,029,274 - 42,042,123 (-)NCBI
RefSeq Acc Id: XM_038627499   ⟹   XP_038483427
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01842,029,274 - 42,042,123 (-)NCBI
RefSeq Acc Id: XM_038627500   ⟹   XP_038483428
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01842,029,274 - 42,040,291 (-)NCBI
RefSeq Acc Id: XM_038627501   ⟹   XP_038483429
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01842,029,274 - 42,037,021 (-)NCBI
RefSeq Acc Id: XM_038627502   ⟹   XP_038483430
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01842,029,274 - 42,037,021 (-)NCBI
RefSeq Acc Id: XM_038627503   ⟹   XP_038483431
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01842,029,274 - 42,042,123 (-)NCBI
RefSeq Acc Id: XM_038627504   ⟹   XP_038483432
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01842,029,130 - 42,042,123 (-)NCBI
RefSeq Acc Id: XM_038627505   ⟹   XP_038483433
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01842,029,274 - 42,042,123 (-)NCBI
RefSeq Acc Id: XM_038627506   ⟹   XP_038483434
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01842,029,274 - 42,037,023 (-)NCBI
RefSeq Acc Id: XM_038627507   ⟹   XP_038483435
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01842,029,130 - 42,042,123 (-)NCBI
Protein Sequences
Protein RefSeqs XP_013976446 (Get FASTA)   NCBI Sequence Viewer  
  XP_022261170 (Get FASTA)   NCBI Sequence Viewer  
  XP_022261172 (Get FASTA)   NCBI Sequence Viewer  
  XP_022261176 (Get FASTA)   NCBI Sequence Viewer  
  XP_038280375 (Get FASTA)   NCBI Sequence Viewer  
  XP_038280376 (Get FASTA)   NCBI Sequence Viewer  
  XP_038280377 (Get FASTA)   NCBI Sequence Viewer  
  XP_038280379 (Get FASTA)   NCBI Sequence Viewer  
  XP_038280380 (Get FASTA)   NCBI Sequence Viewer  
  XP_038280381 (Get FASTA)   NCBI Sequence Viewer  
  XP_038280382 (Get FASTA)   NCBI Sequence Viewer  
  XP_038280383 (Get FASTA)   NCBI Sequence Viewer  
  XP_038280384 (Get FASTA)   NCBI Sequence Viewer  
  XP_038280385 (Get FASTA)   NCBI Sequence Viewer  
  XP_038310425 (Get FASTA)   NCBI Sequence Viewer  
  XP_038310426 (Get FASTA)   NCBI Sequence Viewer  
  XP_038310427 (Get FASTA)   NCBI Sequence Viewer  
  XP_038310428 (Get FASTA)   NCBI Sequence Viewer  
  XP_038310429 (Get FASTA)   NCBI Sequence Viewer  
  XP_038310430 (Get FASTA)   NCBI Sequence Viewer  
  XP_038356663 (Get FASTA)   NCBI Sequence Viewer  
  XP_038356664 (Get FASTA)   NCBI Sequence Viewer  
  XP_038356665 (Get FASTA)   NCBI Sequence Viewer  
  XP_038356666 (Get FASTA)   NCBI Sequence Viewer  
  XP_038356667 (Get FASTA)   NCBI Sequence Viewer  
  XP_038356668 (Get FASTA)   NCBI Sequence Viewer  
  XP_038356669 (Get FASTA)   NCBI Sequence Viewer  
  XP_038356670 (Get FASTA)   NCBI Sequence Viewer  
  XP_038356671 (Get FASTA)   NCBI Sequence Viewer  
  XP_038356672 (Get FASTA)   NCBI Sequence Viewer  
  XP_038419308 (Get FASTA)   NCBI Sequence Viewer  
  XP_038419309 (Get FASTA)   NCBI Sequence Viewer  
  XP_038419310 (Get FASTA)   NCBI Sequence Viewer  
  XP_038419311 (Get FASTA)   NCBI Sequence Viewer  
  XP_038419312 (Get FASTA)   NCBI Sequence Viewer  
  XP_038419313 (Get FASTA)   NCBI Sequence Viewer  
  XP_038419314 (Get FASTA)   NCBI Sequence Viewer  
  XP_038419315 (Get FASTA)   NCBI Sequence Viewer  
  XP_038419316 (Get FASTA)   NCBI Sequence Viewer  
  XP_038419317 (Get FASTA)   NCBI Sequence Viewer  
  XP_038483426 (Get FASTA)   NCBI Sequence Viewer  
  XP_038483427 (Get FASTA)   NCBI Sequence Viewer  
  XP_038483428 (Get FASTA)   NCBI Sequence Viewer  
  XP_038483429 (Get FASTA)   NCBI Sequence Viewer  
  XP_038483430 (Get FASTA)   NCBI Sequence Viewer  
  XP_038483431 (Get FASTA)   NCBI Sequence Viewer  
  XP_038483432 (Get FASTA)   NCBI Sequence Viewer  
  XP_038483433 (Get FASTA)   NCBI Sequence Viewer  
  XP_038483434 (Get FASTA)   NCBI Sequence Viewer  
  XP_038483435 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013976446   ⟸   XM_014120971
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013976447   ⟸   XM_014120972
- Sequence:
RefSeq Acc Id: XP_013976444   ⟸   XM_014120969
- Sequence:
RefSeq Acc Id: XP_013976455   ⟸   XM_014120980
- Sequence:
RefSeq Acc Id: XP_013976453   ⟸   XM_014120978
- Sequence:
RefSeq Acc Id: XP_013976450   ⟸   XM_014120975
- Sequence:
RefSeq Acc Id: XP_022261176   ⟸   XM_022405468
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_022261174   ⟸   XM_022405466
- Sequence:
RefSeq Acc Id: XP_022261173   ⟸   XM_022405465
- Sequence:
RefSeq Acc Id: XP_022261171   ⟸   XM_022405463
- Sequence:
RefSeq Acc Id: XP_022261170   ⟸   XM_022405462
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_022261172   ⟸   XM_022405464
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_022261175   ⟸   XM_022405467
- Sequence:
RefSeq Acc Id: XP_022261169   ⟸   XM_022405461
- Sequence:
RefSeq Acc Id: ENSCAFP00000012970   ⟸   ENSCAFT00000014022
RefSeq Acc Id: ENSCAFP00000053307   ⟸   ENSCAFT00000083207
RefSeq Acc Id: XP_038356672   ⟸   XM_038500744
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038356669   ⟸   XM_038500741
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038356670   ⟸   XM_038500742
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038356663   ⟸   XM_038500735
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038356668   ⟸   XM_038500740
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038356664   ⟸   XM_038500736
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038356665   ⟸   XM_038500737
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038356671   ⟸   XM_038500743
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038356667   ⟸   XM_038500739
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038356666   ⟸   XM_038500738
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038483435   ⟸   XM_038627507
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038483432   ⟸   XM_038627504
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038483433   ⟸   XM_038627505
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038483426   ⟸   XM_038627498
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038483431   ⟸   XM_038627503
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038483427   ⟸   XM_038627499
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038483428   ⟸   XM_038627500
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038483434   ⟸   XM_038627506
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038483430   ⟸   XM_038627502
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038483429   ⟸   XM_038627501
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038280385   ⟸   XM_038424457
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038280382   ⟸   XM_038424454
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038280383   ⟸   XM_038424455
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038280375   ⟸   XM_038424447
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038280381   ⟸   XM_038424453
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038280376   ⟸   XM_038424448
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038280377   ⟸   XM_038424449
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038280384   ⟸   XM_038424456
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038280380   ⟸   XM_038424452
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038280379   ⟸   XM_038424451
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038310430   ⟸   XM_038454502
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038310425   ⟸   XM_038454497
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038310426   ⟸   XM_038454498
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038310429   ⟸   XM_038454501
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038310428   ⟸   XM_038454500
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038310427   ⟸   XM_038454499
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038419317   ⟸   XM_038563389
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038419314   ⟸   XM_038563386
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038419315   ⟸   XM_038563387
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038419308   ⟸   XM_038563380
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038419313   ⟸   XM_038563385
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038419309   ⟸   XM_038563381
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038419310   ⟸   XM_038563382
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038419316   ⟸   XM_038563388
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038419312   ⟸   XM_038563384
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038419311   ⟸   XM_038563383
- Peptide Label: isoform X1
Protein Domains
NR LBD   Nuclear receptor


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000008824 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000012970 UniProtKB/TrEMBL
  ENSCAFP00000053307 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000014022 UniProtKB/TrEMBL
  ENSCAFT00000083207 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/TrEMBL
InterPro Liver_X_rcpt UniProtKB/TrEMBL
  NHR-like_dom_sf UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/TrEMBL
KEGG Report cfa:483625 UniProtKB/TrEMBL
NCBI Gene NR1H3 ENTREZGENE
Pfam Hormone_recep UniProtKB/TrEMBL
  zf-C4 UniProtKB/TrEMBL
PRINTS LIVERXRECPTR UniProtKB/TrEMBL
  STRDHORMONER UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/TrEMBL
SMART HOLI UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/TrEMBL
Superfamily-SCOP SSF48508 UniProtKB/TrEMBL
UniProt A0A5F4CKF5_CANLF UniProtKB/TrEMBL
  E2RS27_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:43943 ENTREZGENE