NUCKS1 (nuclear casein kinase and cyclin dependent kinase substrate 1) - Rat Genome Database

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Gene: NUCKS1 (nuclear casein kinase and cyclin dependent kinase substrate 1) Canis lupus familiaris
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Symbol: NUCKS1
Name: nuclear casein kinase and cyclin dependent kinase substrate 1
RGD ID: 12083021
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor binding (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN cellular glucose homeostasis (ortholog); cellular response to X-ray (ortholog); chromatin organization (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); autistic disorder (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: nuclear ubiquitous casein and cyclin-dependent kinase substrate 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1382,157,109 - 2,188,543 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl382,160,233 - 2,170,560 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha382,247,878 - 2,281,320 (-)NCBI
ROS_Cfam_1.0382,151,877 - 2,185,307 (-)NCBI
UMICH_Zoey_3.1382,146,543 - 2,180,007 (-)NCBI
UNSW_CanFamBas_1.0382,538,314 - 2,571,710 (-)NCBI
UU_Cfam_GSD_1.0382,738,657 - 2,772,120 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
NUCKS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1382,157,109 - 2,188,543 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl382,160,233 - 2,170,560 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha382,247,878 - 2,281,320 (-)NCBI
ROS_Cfam_1.0382,151,877 - 2,185,307 (-)NCBI
UMICH_Zoey_3.1382,146,543 - 2,180,007 (-)NCBI
UNSW_CanFamBas_1.0382,538,314 - 2,571,710 (-)NCBI
UU_Cfam_GSD_1.0382,738,657 - 2,772,120 (-)NCBI
NUCKS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1205,712,822 - 205,750,182 (-)EnsemblGRCh38hg38GRCh38
GRCh381205,712,822 - 205,750,220 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371205,681,950 - 205,719,310 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361203,953,732 - 203,985,916 (-)NCBINCBI36hg18NCBI36
Build 341202,418,765 - 202,450,950NCBI
Celera1178,818,181 - 178,855,596 (-)NCBI
Cytogenetic Map1q32.1NCBI
HuRef1176,846,753 - 176,884,077 (-)NCBIHuRef
CHM1_11207,105,250 - 207,142,880 (-)NCBICHM1_1
Nucks1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,838,196 - 131,864,059 (+)NCBIGRCm39mm39
GRCm39 Ensembl1131,838,272 - 131,864,059 (+)Ensembl
GRCm381131,910,458 - 131,936,321 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,910,534 - 131,936,321 (+)EnsemblGRCm38mm10GRCm38
MGSCv371133,807,035 - 133,832,898 (+)NCBIGRCm37mm9NCBIm37
MGSCv361133,738,080 - 133,760,518 (+)NCBImm8
Celera1134,514,788 - 134,540,507 (+)NCBICelera
Cytogenetic Map1E4NCBI
Nucks1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21343,345,091 - 43,374,316 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1343,345,115 - 43,370,229 (+)Ensembl
Rnor_6.01348,679,726 - 48,709,663 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1348,679,774 - 48,705,575 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01353,753,029 - 53,782,671 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46142,904,062 - 142,905,783 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.16142,910,248 - 142,911,961 (+)NCBI
Celera1343,682,215 - 43,706,828 (+)NCBICelera
Cytogenetic Map13q13NCBI
Nucks1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540641,417,983 - 41,449,177 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540641,412,855 - 41,448,551 (-)NCBIChiLan1.0ChiLan1.0
NUCKS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11185,606,796 - 185,642,984 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1185,606,796 - 185,642,984 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01181,322,760 - 181,359,321 (-)NCBIMhudiblu_PPA_v0panPan3
Nucks1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934469,472,785 - 69,487,729 (+)NCBI
SpeTri2.0NW_0049365576,713,065 - 6,728,011 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUCKS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl966,398,227 - 66,435,577 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1966,398,845 - 66,435,548 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2972,663,549 - 72,701,529 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUCKS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12523,597,210 - 23,634,262 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2523,597,464 - 23,629,169 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605524,292,825 - 24,330,137 (+)NCBIVero_WHO_p1.0
Nucks1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248075,495,770 - 5,535,907 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005640796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038448329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038448330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038463965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038463966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038650454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038650455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000016150   ⟹   ENSCAFP00000014936
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl382,160,233 - 2,170,560 (-)Ensembl
RefSeq Acc Id: XM_038448329   ⟹   XP_038304257
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0382,151,877 - 2,185,307 (-)NCBI
RefSeq Acc Id: XM_038448330   ⟹   XP_038304258
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0382,151,877 - 2,185,217 (-)NCBI
RefSeq Acc Id: XM_038463965   ⟹   XP_038319893
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha382,247,878 - 2,281,320 (-)NCBI
RefSeq Acc Id: XM_038463966   ⟹   XP_038319894
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha382,247,878 - 2,281,228 (-)NCBI
RefSeq Acc Id: XM_038522249   ⟹   XP_038378177
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1382,146,543 - 2,180,007 (-)NCBI
RefSeq Acc Id: XM_038522250   ⟹   XP_038378178
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1382,146,543 - 2,179,917 (-)NCBI
RefSeq Acc Id: XM_038586049   ⟹   XP_038441977
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0382,738,657 - 2,772,120 (-)NCBI
RefSeq Acc Id: XM_038586050   ⟹   XP_038441978
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0382,738,657 - 2,772,030 (-)NCBI
RefSeq Acc Id: XM_038650454   ⟹   XP_038506382
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0382,538,314 - 2,571,710 (-)NCBI
RefSeq Acc Id: XM_038650455   ⟹   XP_038506383
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0382,538,314 - 2,571,620 (-)NCBI
Reference Sequences
RefSeq Acc Id: ENSCAFP00000014936   ⟸   ENSCAFT00000016150
RefSeq Acc Id: XP_038378177   ⟸   XM_038522249
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038378178   ⟸   XM_038522250
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038506382   ⟸   XM_038650454
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038506383   ⟸   XM_038650455
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038304257   ⟸   XM_038448329
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038304258   ⟸   XM_038448330
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038319893   ⟸   XM_038463965
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038319894   ⟸   XM_038463966
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038441977   ⟸   XM_038586049
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038441978   ⟸   XM_038586050
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010168 Ensembl
NCBI Gene NUCKS1 ENTREZGENE
VGNC ID VGNC:53125 ENTREZGENE