OR1M1B (olfactory receptor family 1 subfamily M member 1B) - Rat Genome Database

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Gene: OR1M1B (olfactory receptor family 1 subfamily M member 1B) Canis lupus familiaris
Analyze
Symbol: OR1M1B
Name: olfactory receptor family 1 subfamily M member 1B
RGD ID: 12081648
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: cOR1M2; LOC484987; olfactory receptor; olfactory receptor 24; OR08C10; OR1M1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12051,719,180 - 51,720,121 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2051,719,180 - 51,720,121 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2051,583,899 - 51,584,840 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02052,240,428 - 52,241,369 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2052,240,428 - 52,241,369 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12051,445,379 - 51,446,320 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02051,872,850 - 51,873,791 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02052,117,036 - 52,117,977 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14659017   PMID:14962662   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
OR1M1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12051,719,180 - 51,720,121 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2051,719,180 - 51,720,121 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2051,583,899 - 51,584,840 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02052,240,428 - 52,241,369 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2052,240,428 - 52,241,369 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12051,445,379 - 51,446,320 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02051,872,850 - 51,873,791 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02052,117,036 - 52,117,977 (+)NCBIUU_Cfam_GSD_1.0
OR1M1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38199,087,061 - 9,095,669 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl199,087,061 - 9,095,669 (+)EnsemblGRCh38hg38GRCh38
GRCh37199,197,737 - 9,206,345 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36199,064,921 - 9,065,862 (+)NCBINCBI36Build 36hg18NCBI36
Build 34199,064,920 - 9,065,862NCBI
Celera199,099,366 - 9,100,307 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef198,785,579 - 8,786,520 (+)NCBIHuRef
CHM1_1199,203,628 - 9,204,569 (+)NCBICHM1_1
T2T-CHM13v2.0199,213,236 - 9,221,832 (+)NCBIT2T-CHM13v2.0
Or1m1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39918,665,988 - 18,666,929 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl918,662,803 - 18,675,292 (-)EnsemblGRCm39 Ensembl
GRCm38918,754,692 - 18,755,633 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl918,751,507 - 18,763,996 (-)EnsemblGRCm38mm10GRCm38
MGSCv37918,559,136 - 18,560,077 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36918,505,094 - 18,506,035 (-)NCBIMGSCv36mm8
Celera916,038,485 - 16,039,426 (-)NCBICelera
Cytogenetic Map9A2NCBI
cM Map97.13NCBI
Or1m1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8824,723,885 - 24,734,392 (-)NCBIGRCr8
mRatBN7.2816,447,986 - 16,448,927 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl816,444,273 - 16,458,148 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx820,432,774 - 20,433,715 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0818,730,608 - 18,731,549 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0816,662,514 - 16,663,455 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0818,719,444 - 18,720,385 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl818,719,444 - 18,720,385 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0818,786,219 - 18,787,160 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4816,840,427 - 16,841,368 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1816,840,426 - 16,841,368 (-)NCBI
Celera817,865,961 - 17,866,902 (-)NCBICelera
Cytogenetic Map8q13NCBI
LOC102019713
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955495157,242 - 158,152 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955495157,242 - 158,152 (+)NCBIChiLan1.0ChiLan1.0
LOC101967496
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118212,121,399 - 212,123,289 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365885,712,273 - 5,713,384 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
R1C1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1267,104,948 - 67,105,889 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2267,414,469 - 67,415,406 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103233852
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.168,341,735 - 8,343,035 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl68,341,934 - 8,342,875 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607411,809,617 - 11,810,700 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in OR1M1B
4 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

reproductive system
High
Medium
Low
Below cutoff 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000046062   ⟹   ENSCAFP00000038686
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2051,719,180 - 51,720,121 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845042808   ⟹   ENSCAFP00845033558
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2052,240,428 - 52,241,369 (+)Ensembl
RefSeq Acc Id: NM_001388682   ⟹   NP_001375611
RefSeq Status: INFERRED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2051,583,899 - 51,584,840 (+)NCBI
ROS_Cfam_1.02052,240,428 - 52,241,369 (+)NCBI
UMICH_Zoey_3.12051,445,379 - 51,446,320 (+)NCBI
UNSW_CanFamBas_1.02051,872,850 - 51,873,791 (+)NCBI
UU_Cfam_GSD_1.02052,117,036 - 52,117,977 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001375611 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAD24153 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000036262.1
  ENSCAFP00000038686.2
  ENSCAFP00030037881.1
  ENSCAFP00040038863.1
  ENSCAFP00845033558
  ENSCAFP00845033558.1
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000038686   ⟸   ENSCAFT00000046062
RefSeq Acc Id: NP_001375611   ⟸   NM_001388682
- UniProtKB: A0A8C0TQB6 (UniProtKB/TrEMBL),   A0A8C0LG68 (UniProtKB/TrEMBL),   A0A8I3PM40 (UniProtKB/TrEMBL),   A0A8P0SRP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845033558   ⟸   ENSCAFT00845042808
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000030401 Ensembl
  ENSCAFG00000053826 UniProtKB/TrEMBL
  ENSCAFG00000055257 UniProtKB/TrEMBL
  ENSCAFG00030023609 UniProtKB/TrEMBL
  ENSCAFG00040023907 UniProtKB/TrEMBL
  ENSCAFG00845024254 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000046062.3 UniProtKB/TrEMBL
  ENSCAFT00000049050.2 UniProtKB/TrEMBL
  ENSCAFT00030043396.1 UniProtKB/TrEMBL
  ENSCAFT00040044502.1 UniProtKB/TrEMBL
  ENSCAFT00845042808 ENTREZGENE
  ENSCAFT00845042808.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene LOC484987 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 1M1 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C0LG68 ENTREZGENE
  A0A8C0TQB6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PM40 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SRP6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:84593 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-01-14 OR1M1B  olfactory receptor family 1 subfamily M member 1B  LOC484987  olfactory receptor  Symbol and/or name change 5135510 APPROVED