MCL1 (MCL1 apoptosis regulator, BCL2 family member) - Rat Genome Database

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Gene: MCL1 (MCL1 apoptosis regulator, BCL2 family member) Canis lupus familiaris
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Symbol: MCL1
Name: MCL1 apoptosis regulator, BCL2 family member
RGD ID: 12081468
Description: ENCODES a protein that exhibits BH domain binding (ortholog); protein dimerization activity (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN DNA damage response (ortholog); extrinsic apoptotic signaling pathway in absence of ligand (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; interleukin-6 signaling pathway; intrinsic apoptotic pathway; ASSOCIATED WITH Barrett's esophagus (ortholog); colon cancer (ortholog); colorectal cancer (ortholog); FOUND IN Bcl-2 family protein complex (ortholog); cytosol (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BCL2 family apoptosis regulator; induced myeloid leukemia cell differentiation protein Mcl-1 homolog; MCL1, BCL2 family apoptosis regulator; myeloid cell leukemia sequence 1 (BCL2-related)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11759,759,605 - 59,763,111 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1759,759,605 - 59,763,111 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1759,205,905 - 59,209,411 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01760,773,751 - 60,778,808 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1760,773,753 - 60,778,722 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11759,605,427 - 59,608,935 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01759,689,378 - 59,692,878 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01760,416,999 - 60,420,508 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:15240948   PMID:15563927   PMID:19185893   PMID:23428776   PMID:30032202  


Genomics

Comparative Map Data
MCL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11759,759,605 - 59,763,111 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1759,759,605 - 59,763,111 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1759,205,905 - 59,209,411 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01760,773,751 - 60,778,808 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1760,773,753 - 60,778,722 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11759,605,427 - 59,608,935 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01759,689,378 - 59,692,878 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01760,416,999 - 60,420,508 (-)NCBIUU_Cfam_GSD_1.0
MCL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381150,574,558 - 150,579,610 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1150,560,895 - 150,579,738 (-)EnsemblGRCh38hg38GRCh38
GRCh371150,547,034 - 150,552,086 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361148,813,658 - 148,818,760 (-)NCBINCBI36Build 36hg18NCBI36
Build 341147,360,106 - 147,365,209NCBI
Celera1123,662,793 - 123,667,900 (-)NCBICelera
Cytogenetic Map1q21.2NCBI
HuRef1121,925,157 - 121,930,349 (-)NCBIHuRef
CHM1_11151,942,802 - 151,947,994 (-)NCBICHM1_1
T2T-CHM13v2.01149,698,578 - 149,703,635 (-)NCBIT2T-CHM13v2.0
Mcl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39395,564,017 - 95,583,553 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl395,566,099 - 95,570,487 (+)EnsemblGRCm39 Ensembl
GRCm38395,656,944 - 95,663,179 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,658,788 - 95,663,176 (+)EnsemblGRCm38mm10GRCm38
MGSCv37395,462,643 - 95,467,102 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36395,744,192 - 95,748,584 (+)NCBIMGSCv36mm8
MGSCv36395,942,505 - 95,946,924 (+)NCBIMGSCv36mm8
Celera397,090,304 - 97,094,626 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.74NCBI
Mcl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82185,884,840 - 185,912,532 (+)NCBIGRCr8
mRatBN7.22183,219,137 - 183,235,676 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2183,219,220 - 183,222,303 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2190,884,075 - 190,887,160 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02188,679,562 - 188,682,647 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02183,516,603 - 183,519,688 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02197,786,212 - 197,788,992 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02217,273,158 - 217,275,930 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2175,749,995 - 175,752,956 (+)NCBICelera
Cytogenetic Map2q34NCBI
Mcl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955413238,043 - 243,317 (+)NCBIChiLan1.0ChiLan1.0
MCL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2199,257,840 - 99,264,868 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1199,013,464 - 99,018,758 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01125,918,760 - 125,923,952 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11129,566,827 - 129,572,086 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1129,566,827 - 129,572,086 (-)Ensemblpanpan1.1panPan2
Mcl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505821,772,943 - 21,777,059 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936580804,903 - 806,796 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936580803,452 - 806,966 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MCL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,534,812 - 98,567,006 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,562,092 - 98,567,014 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24107,809,204 - 107,814,036 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MCL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366603812,707,472 - 12,712,711 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mcl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477218,289,509 - 18,319,033 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477218,287,587 - 18,292,384 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MCL1
58 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000019132   ⟹   ENSCAFP00000017738
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1759,759,605 - 59,763,111 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000076312   ⟹   ENSCAFP00000046220
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1759,759,605 - 59,763,030 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845032721   ⟹   ENSCAFP00845025596
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1760,773,753 - 60,778,722 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845032754   ⟹   ENSCAFP00845025628
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1760,773,753 - 60,778,541 (-)Ensembl
RefSeq Acc Id: NM_001003016   ⟹   NP_001003016
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11759,759,605 - 59,763,111 (-)NCBI
Dog10K_Boxer_Tasha1759,205,905 - 59,209,411 (-)NCBI
ROS_Cfam_1.01760,775,117 - 60,778,622 (-)NCBI
UMICH_Zoey_3.11759,605,427 - 59,608,935 (-)NCBI
UNSW_CanFamBas_1.01759,689,378 - 59,692,878 (-)NCBI
UU_Cfam_GSD_1.01760,416,999 - 60,420,508 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038690428   ⟹   XP_038546356
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01760,773,751 - 60,778,808 (-)NCBI
RefSeq Acc Id: NP_001003016   ⟸   NM_001003016
- UniProtKB: Q8HYS5 (UniProtKB/Swiss-Prot),   A0A8C0MD43 (UniProtKB/TrEMBL),   A0A8C0L4C8 (UniProtKB/TrEMBL),   A0A8I3P430 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000017738   ⟸   ENSCAFT00000019132
RefSeq Acc Id: ENSCAFP00000046220   ⟸   ENSCAFT00000076312
RefSeq Acc Id: XP_038546356   ⟸   XM_038690428
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MCZ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845025628   ⟸   ENSCAFT00845032754
RefSeq Acc Id: ENSCAFP00845025596   ⟸   ENSCAFT00845032721
Promoters
RGD ID:13686388
Promoter ID:EPDNEW_C4458
Type:multiple initiation site
Name:MCL1_1
Description:MCL1, BCL2 family apoptosis regulator
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11759,763,131 - 59,763,191EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012050 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030006114 UniProtKB/TrEMBL
  ENSCAFG00040010751 UniProtKB/TrEMBL
  ENSCAFG00845018496 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000019132.4 UniProtKB/TrEMBL
  ENSCAFT00000076312.2 UniProtKB/TrEMBL
  ENSCAFT00030011328.1 UniProtKB/TrEMBL
  ENSCAFT00030011346.1 UniProtKB/TrEMBL
  ENSCAFT00040019936.1 UniProtKB/TrEMBL
  ENSCAFT00040020013.1 UniProtKB/TrEMBL
  ENSCAFT00845032721 ENTREZGENE
  ENSCAFT00845032721.1 UniProtKB/TrEMBL
  ENSCAFT00845032754.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.437.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Apop_reg_Mc1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Bcl-2-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Bcl-2_BH1-3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Bcl-2_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Bcl2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Bcl2_BH1_motif_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Bcl2_BH2_motif_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Bcl2_BH3_motif_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report cfa:403537 UniProtKB/TrEMBL
NCBI Gene MCL1 ENTREZGENE
PANTHER PTHR11256 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11256:SF46 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Bcl-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS APOPREGMCL1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BCL2FAMILY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE BCL2_FAMILY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BH1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BCL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56854 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8C0L4C8 ENTREZGENE
  A0A8C0MCZ5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0MD43 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0S8A7_CANLF UniProtKB/TrEMBL
  A0A8I3P430 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P6T4_CANLF UniProtKB/TrEMBL
  MCL1_CANLF UniProtKB/Swiss-Prot, ENTREZGENE
VGNC ID VGNC:43079 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-30 MCL1  MCL1 apoptosis regulator, BCL2 family member    MCL1, BCL2 family apoptosis regulator  Symbol and/or name change 5135510 APPROVED
2017-03-08 MCL1  MCL1, BCL2 family apoptosis regulator    BCL2 family apoptosis regulator  Symbol and/or name change 5135510 APPROVED