ELOVL7 (ELOVL fatty acid elongase 7) - Rat Genome Database

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Gene: ELOVL7 (ELOVL fatty acid elongase 7) Canis lupus familiaris
Analyze
Symbol: ELOVL7
Name: ELOVL fatty acid elongase 7
RGD ID: 12079236
Description: ENCODES a protein that exhibits fatty acid elongase activity (inferred); transferase activity (inferred); very-long-chain 3-ketoacyl-CoA synthase activity (inferred); INVOLVED IN cellular biosynthetic process (inferred); cellular lipid metabolic process (inferred); fatty acid biosynthetic process (inferred); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: elongation of very long chain fatty acids protein 7; ELOVL family member 7, elongation of long chain fatty acids
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1247,406,323 - 47,482,113 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl247,296,656 - 47,482,064 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha244,482,053 - 44,557,877 (-)NCBI
ROS_Cfam_1.0247,883,290 - 47,959,282 (-)NCBI
ROS_Cfam_1.0 Ensembl247,883,307 - 47,959,225 (-)Ensembl
UMICH_Zoey_3.1244,953,671 - 45,029,435 (-)NCBI
UNSW_CanFamBas_1.0245,733,258 - 45,815,969 (-)NCBI
UU_Cfam_GSD_1.0246,592,096 - 46,667,957 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
ELOVL7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1247,406,323 - 47,482,113 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl247,296,656 - 47,482,064 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha244,482,053 - 44,557,877 (-)NCBI
ROS_Cfam_1.0247,883,290 - 47,959,282 (-)NCBI
ROS_Cfam_1.0 Ensembl247,883,307 - 47,959,225 (-)Ensembl
UMICH_Zoey_3.1244,953,671 - 45,029,435 (-)NCBI
UNSW_CanFamBas_1.0245,733,258 - 45,815,969 (-)NCBI
UU_Cfam_GSD_1.0246,592,096 - 46,667,957 (-)NCBI
ELOVL7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38560,751,791 - 60,844,269 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl560,751,791 - 60,844,274 (-)EnsemblGRCh38hg38GRCh38
GRCh37560,047,618 - 60,140,096 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36560,083,373 - 60,175,858 (-)NCBINCBI36hg18NCBI36
Build 34560,084,557 - 60,118,950NCBI
Celera556,988,499 - 57,035,934 (-)NCBI
Cytogenetic Map5q12.1NCBI
HuRef557,005,661 - 57,098,149 (-)NCBIHuRef
CHM1_1560,047,394 - 60,139,754 (-)NCBICHM1_1
T2T-CHM13v2.0561,568,283 - 61,660,633 (-)NCBI
T2T-CHM13v2.0561,617,072 - 61,660,509 (-)NCBI
Elovl7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913108,350,860 - 108,423,643 (+)NCBIGRCm39mm39
GRCm39 Ensembl13108,350,938 - 108,422,217 (+)Ensembl
GRCm3813108,214,326 - 108,287,109 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13108,214,404 - 108,285,683 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713109,004,598 - 109,077,303 (+)NCBIGRCm37mm9NCBIm37
MGSCv3613109,335,178 - 109,405,803 (+)NCBImm8
Celera13112,551,690 - 112,624,165 (+)NCBICelera
Cytogenetic Map13D2.1NCBI
Elovl7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2239,789,229 - 39,858,579 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl239,789,250 - 39,856,845 (+)Ensembl
Rnor_6.0240,373,211 - 40,386,643 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl240,373,211 - 40,386,669 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0258,700,091 - 58,710,001 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0259,446,064 - 59,459,496 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4239,568,590 - 39,596,055 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1239,448,011 - 39,516,142 (+)NCBI
Celera235,669,583 - 35,696,983 (+)NCBICelera
Cytogenetic Map2q14NCBI
Elovl7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554467,700,511 - 7,758,842 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554467,732,291 - 7,758,842 (+)NCBIChiLan1.0ChiLan1.0
ELOVL7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1554,797,632 - 54,888,930 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl554,853,330 - 54,888,930 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0553,156,518 - 53,248,839 (+)NCBIMhudiblu_PPA_v0panPan3
Elovl7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213198,705,753 - 198,774,777 (+)NCBI
SpeTri2.0NW_0049364807,642,188 - 7,711,245 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELOVL7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1639,588,129 - 39,680,173 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11639,588,122 - 39,680,273 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21642,499,485 - 42,591,696 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ELOVL7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1456,934,631 - 57,026,749 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl456,934,645 - 56,965,285 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660495,423,953 - 5,516,229 (-)NCBIVero_WHO_p1.0
Elovl7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248159,190,454 - 9,247,746 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248159,154,070 - 9,247,251 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 3 3
Low 5 5 6 6 9 8 7 2
Below cutoff 5 14 6 6 6 3 4

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005617423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022409717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022409722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038469870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038469871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038469873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038530678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038530679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038530680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038594901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038658975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038658976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038658977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_846175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00845013437   ⟹   ENSCAFP00845010429
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl247,883,307 - 47,959,210 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845013455   ⟹   ENSCAFP00845010440
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl247,883,345 - 47,959,225 (-)Ensembl
RefSeq Acc Id: XM_005617423   ⟹   XP_005617480
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1247,406,323 - 47,482,107 (-)NCBI
Dog10K_Boxer_Tasha244,482,053 - 44,557,840 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022409722   ⟹   XP_022265430
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1247,406,323 - 47,482,113 (-)NCBI
Dog10K_Boxer_Tasha244,482,053 - 44,557,877 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038469870   ⟹   XP_038325798
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1244,953,671 - 45,029,435 (-)NCBI
RefSeq Acc Id: XM_038469871   ⟹   XP_038325799
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1244,953,671 - 45,029,398 (-)NCBI
RefSeq Acc Id: XM_038469873   ⟹   XP_038325801
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1244,953,671 - 45,029,435 (-)NCBI
RefSeq Acc Id: XM_038530678   ⟹   XP_038386606
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0246,592,096 - 46,667,957 (-)NCBI
RefSeq Acc Id: XM_038530679   ⟹   XP_038386607
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0246,592,096 - 46,667,920 (-)NCBI
RefSeq Acc Id: XM_038530680   ⟹   XP_038386608
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0246,592,096 - 46,667,957 (-)NCBI
RefSeq Acc Id: XM_038594899   ⟹   XP_038450827
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0245,733,258 - 45,815,969 (-)NCBI
RefSeq Acc Id: XM_038594900   ⟹   XP_038450828
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0245,733,258 - 45,815,932 (-)NCBI
RefSeq Acc Id: XM_038594901   ⟹   XP_038450829
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0245,733,258 - 45,815,969 (-)NCBI
RefSeq Acc Id: XM_038658975   ⟹   XP_038514903
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0247,883,290 - 47,959,282 (-)NCBI
RefSeq Acc Id: XM_038658976   ⟹   XP_038514904
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0247,883,290 - 47,959,245 (-)NCBI
RefSeq Acc Id: XM_038658977   ⟹   XP_038514905
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0247,883,290 - 47,959,282 (-)NCBI
RefSeq Acc Id: XM_846175   ⟹   XP_851268
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1247,406,323 - 47,482,113 (-)NCBI
Dog10K_Boxer_Tasha244,482,053 - 44,557,877 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_851268   ⟸   XM_846175
- Peptide Label: isoform X1
- UniProtKB: J9NT60 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005617480   ⟸   XM_005617423
- Peptide Label: isoform X1
- UniProtKB: J9NT60 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022265430   ⟸   XM_022409722
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_038325801   ⟸   XM_038469873
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038325798   ⟸   XM_038469870
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038325799   ⟸   XM_038469871
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038450829   ⟸   XM_038594901
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038450827   ⟸   XM_038594899
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038450828   ⟸   XM_038594900
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038514905   ⟸   XM_038658977
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038514903   ⟸   XM_038658975
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038514904   ⟸   XM_038658976
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038386608   ⟸   XM_038530680
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038386606   ⟸   XM_038530678
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038386607   ⟸   XM_038530679
- Peptide Label: isoform X1
RefSeq Acc Id: ENSCAFP00845010429   ⟸   ENSCAFT00845013437
RefSeq Acc Id: ENSCAFP00845010440   ⟸   ENSCAFT00845013455

Promoters
RGD ID:13682475
Promoter ID:EPDNEW_C543
Type:multiple initiation site
Name:ELOVL7_1
Description:ELOVL fatty acid elongase 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1247,482,273 - 47,482,333EPDNEW
Damaging Variants


Assembly: CanFam3.1

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
2 47422540 47422541 C T snv Chinese indigenous dogs (DQ10)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000007133 Ensembl
  ENSCAFG00030001492 UniProtKB/TrEMBL
  ENSCAFG00040001972 UniProtKB/TrEMBL
  ENSCAFG00845007620 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00030002391.1 UniProtKB/TrEMBL
  ENSCAFP00040003491 UniProtKB/TrEMBL
  ENSCAFP00845010429 ENTREZGENE
  ENSCAFP00845010429.1 UniProtKB/TrEMBL
  ENSCAFP00845010440 ENTREZGENE
  ENSCAFP00845010440.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030002681.1 UniProtKB/TrEMBL
  ENSCAFT00040004074 UniProtKB/TrEMBL
  ENSCAFT00845013437 ENTREZGENE
  ENSCAFT00845013437.1 UniProtKB/TrEMBL
  ENSCAFT00845013455 ENTREZGENE
  ENSCAFT00845013455.1 UniProtKB/TrEMBL
InterPro ELO_CS UniProtKB/TrEMBL
  ELO_fam UniProtKB/TrEMBL
  ELOVL7 UniProtKB/TrEMBL
NCBI Gene ELOVL7 ENTREZGENE
PANTHER PTHR11157 UniProtKB/TrEMBL
  PTHR11157:SF118 UniProtKB/TrEMBL
Pfam ELO UniProtKB/TrEMBL
PROSITE ELO UniProtKB/TrEMBL
UniProt A0A8C0LVP0_CANLF UniProtKB/TrEMBL
  A0A8I3N154_CANLF UniProtKB/TrEMBL
  A0A8I3N390_CANLF UniProtKB/TrEMBL
  J9NT60 ENTREZGENE
VGNC ID VGNC:40325 ENTREZGENE