CRYL1 (crystallin lambda 1) - Rat Genome Database

Name: CRYL1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: CRYL1 (crystallin lambda 1) Canis lupus familiaris

Analyze

Symbol:

CRYL1

Name:

crystallin lambda 1

RGD ID:

12076101

Description:

ENCODES a protein that exhibits L-gulonate 3-dehydrogenase activity (inferred); NAD+ binding (inferred); oxidoreductase activity (inferred); INVOLVED IN fatty acid metabolic process (inferred); glucuronate catabolic process to xylulose 5-phosphate (inferred); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 3B (ortholog); autosomal recessive nonsyndromic deafness 1A (ortholog); autosomal recessive nonsyndromic deafness 1B (ortholog); FOUND IN cytosol (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

lambda-crystallin homolog

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Bonobo

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CRYL1 (crystallin lambda 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Cryl1 (crystallin, lambda 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cryl1 (crystallin, lambda 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cryl1 (crystallin lambda 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CRYL1 (crystallin lambda 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cryl1 (crystallin lambda 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CRYL1 (crystallin lambda 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CRYL1 (crystallin lambda 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cryl1 (crystallin lambda 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	17,551,586 - 17,733,754 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	17,562,926 - 17,733,630 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	17,619,089 - 17,764,441 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	17,726,192 - 17,871,609 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	17,700,683 - 17,871,604 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	17,597,124 - 17,742,462 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	17,608,651 - 17,753,939 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	17,665,268 - 17,810,580 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant nonsyndromic deafness 3B (ISO)

autosomal recessive nonsyndromic deafness 1A (ISO)

autosomal recessive nonsyndromic deafness 1B (ISO)

cataract 14 multiple types (ISO)

Clouston syndrome (ISO)

ectodermal dysplasia (ISO)

genetic disease (ISO)

nonsyndromic deafness (ISO)

perinatal necrotizing enterocolitis (ISO)

Prostatic Neoplasms (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

fatty acid metabolic process (IEA)

glucuronate catabolic process to xylulose 5-phosphate (IEA)

Cellular Component

cytosol (IEA,ISO)

Molecular Function

L-gulonate 3-dehydrogenase activity (IBA,IEA)

NAD+ binding (IEA)

oxidoreductase activity (IEA)

oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (IBA,IEA)

protein homodimerization activity (IEA)

References

Genomics

Comparative Map Data

CRYL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	17,551,586 - 17,733,754 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	17,562,926 - 17,733,630 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	17,619,089 - 17,764,441 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	17,726,192 - 17,871,609 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	17,700,683 - 17,871,604 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	17,597,124 - 17,742,462 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	17,608,651 - 17,753,939 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	17,665,268 - 17,810,580 (+)	NCBI		UU_Cfam_GSD_1.0

CRYL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	20,403,669 - 20,525,857 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	13	20,403,666 - 20,525,873 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	20,977,808 - 21,099,996 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	19,875,806 - 19,998,012 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	19,875,812 - 19,997,943	NCBI
Celera	13	2,039,633 - 2,161,963 (-)	NCBI		Celera
Cytogenetic Map	13	q12.11	NCBI
HuRef	13	1,781,253 - 1,903,750 (-)	NCBI		HuRef
CHM1_1	13	20,946,082 - 21,068,258 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	19,596,766 - 19,719,067 (-)	NCBI		T2T-CHM13v2.0

Cryl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	57,512,491 - 57,635,940 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	57,512,450 - 57,635,986 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	57,275,034 - 57,398,483 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	57,274,993 - 57,398,529 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	57,893,871 - 58,017,320 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	56,229,144 - 56,352,593 (-)	NCBI		MGSCv36	mm8
Celera	14	55,069,601 - 55,193,438 (-)	NCBI		Celera
Cytogenetic Map	14	C3	NCBI
cM Map	14	30.1	NCBI

Cryl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	15	31,427,011 - 31,545,997 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	31,427,054 - 31,545,997 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	33,418,360 - 33,537,311 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	15	34,569,025 - 34,687,978 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	15	32,827,144 - 32,946,073 (-)	NCBI	Rnor_WKY
Rnor_6.0	15	37,543,727 - 37,663,586 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	37,543,727 - 37,663,584 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	41,389,673 - 41,509,443 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	36,320,075 - 36,440,579 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	36,335,774 - 36,456,279 (-)	NCBI
Celera	15	31,137,966 - 31,257,153 (-)	NCBI		Celera
Cytogenetic Map	15	p12	NCBI

Cryl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955497	1,182,115 - 1,292,721 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955497	1,183,707 - 1,316,720 (-)	NCBI	ChiLan1.0	ChiLan1.0

CRYL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	13	20,043,630 - 20,165,344 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	20,043,630 - 20,165,344 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	13	1,729,724 - 1,852,031 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

Cryl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	119,654,108 - 119,786,851 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936720	1,201,697 - 1,334,527 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936720	1,201,725 - 1,334,483 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CRYL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	845,475 - 931,648 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	845,471 - 925,849 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	5,725 - 138,292 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CRYL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	567,937 - 704,109 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	567,931 - 688,388 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666057	43,881,123 - 44,023,426 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cryl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624776	17,127,002 - 17,312,348 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624776	17,127,362 - 17,312,271 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CRYL1
2057 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	4		11	2		2	6		12		6	1
Low	1	5	11	4	6	4		6		8	4	5
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_014107417	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022409683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038435104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038435105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038510080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038573514	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038573515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038637815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038637816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_543175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSCAFT00000011676 ⟹ ENSCAFP00000010819

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	25	17,588,699 - 17,733,630 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000087275 ⟹ ENSCAFP00000044201

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	25	17,588,699 - 17,733,630 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000087696 ⟹ ENSCAFP00000053315

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	25	17,588,897 - 17,733,630 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000088227 ⟹ ENSCAFP00000045985

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	25	17,562,926 - 17,733,630 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000088271 ⟹ ENSCAFP00000054330

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	25	17,577,491 - 17,733,630 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845040875 ⟹ ENSCAFP00845032008

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	25	17,700,683 - 17,871,604 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845040951 ⟹ ENSCAFP00845032079

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	25	17,726,473 - 17,871,604 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845041012 ⟹ ENSCAFP00845032131

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	25	17,726,473 - 17,871,604 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845041087 ⟹ ENSCAFP00845032198

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	25	17,726,657 - 17,871,604 (+)	Ensembl

RefSeq Acc Id:

XM_022409683 ⟹ XP_022265391

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	25	17,588,291 - 17,733,754 (+)	NCBI
Dog10K_Boxer_Tasha	25	17,619,089 - 17,764,441 (+)	NCBI

Sequence:

show sequence

CCGTCTTCCAGTTTCACTGGAGTTCCAGTTTCCCAGAGTTCCTGGGTCTCATTTCTCATCTGCG
GAGAAAGGCAGCGAGGATCTTTCTAGAAACGAATTATGAGTGCAAACTCAGCAAAACCACCCTC
AGTAGAAAGGCCAGAACTGTGGACTCATTGGGCGAAGCTGGGCTATGTTGTTTGCCAGTGGAGG
CTTCAAGGTGAAACTCTATGATATTGAGCAACAGCAGGTAACAAATGCCTTGGAAACCATCAGG
AAAGAGATGAAGATTCTGGAGCAGTCAGGTTCTCTGAGAGGCTCCCTGAGTTCTGAAGAACAGC
TGTCACTCATCAGTGGTTGTTCAAATATTCAAGCGGCAGTAGAGGGCGCTGGGCACATTCAGGA
ATGTGTTCCAGAAAACCTAGAGCTGAAGAAGAAGATTTTTGCTCAGTTAGATCAAATTGTCGAC
GATAAAGTTGTCTTAAGCAGCTCCACCTCTTGCCTCCTGCCTTCTAAGCTGTTTGCTGGCCTGG
CGCACGTGAAGCAGTGCCTTGTTGTCCATCCGGTAAACCCACCGTACTACGTGCCATTGGTTGA
GCTGGTCCCACACCCGGAGACGGCTCCTGCGACAATGGACAGAACCTACGCCCTGATGCAGAAG
ATTGGACAGTCCCCAGTCAGAATCATGAAGGAGATTGAAGGCTTTGCCCTGAATCGCCTTCAGT
ATGCCATCATCGGTGAGGCCTGGCGGCTCGTGGAGGAAGGAATAGTTTCTCCGAGTGACCTTGA
CCTTGTCATGTCAGATGGCCTGGGCATGCGGTATGCATTCATCGGACCCTTAGAAACTATGCAT
CTCAATGCAGAAGGTATGTTAAACTACTGTGACAGATACAGGGAAGGCATGAAACGTGTCCTGA
AGACTTTTGGGCCCATTCCAGACTTTTCCAGGGCCACCACTGAAAAAGTTAACCAGGCCATGTG
TGTGAATGTTCCTGATGACCCAGAGCACTTAGGCGCCAGAAGGCAGTGGAGGGACGAGTGTCTC
CTGAGACTGGCCAAGTTGAAGAGGCAGATGCAGTCCCAGTAAAGCTTCCTGCTGAGCTCCCATC
CTTCGTTATTGGGAGTCCTCGTTGGGAGAATCACAAGCACTTAATTGAACCTGGAGGCCAGGTG
GTCTTCATGCAGATTCAATGGTGGGGCCACAGCGGTGGGGCTGAGAGGTCCTCTGATCACTCCC
TGGCCTTGGGTGTCACAGCTGCACTGGAATCTGAGGGCTGTTGGCTCCCTGCAACTTGGGCAAG
CAAGAGAACAAATCGTCTGAAGATTTTCACCTTTTATTTTTAGAGATTCCATACAGCGGCATTT
TATAGCCAATGATTGTGGTTTCAAGTTTATTTTAATCTGTAGCAAAGTTTTGTAATGATTTTCT
AATCTCTTTCTGAGTACTCTGTGGCCCTGCATTATGAGGCACCTACCTTCATTTTGCTAATGCT
TATTCTGAATAAAAGTCTTTCCTTGCATAAA

hide sequence

RefSeq Acc Id:

XM_038435104 ⟹ XP_038291032

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	25	17,726,588 - 17,871,609 (+)	NCBI

RefSeq Acc Id:

XM_038435105 ⟹ XP_038291033

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	25	17,726,192 - 17,871,609 (+)	NCBI

RefSeq Acc Id:

XM_038510080 ⟹ XP_038366008

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	25	17,597,124 - 17,742,462 (+)	NCBI

RefSeq Acc Id:

XM_038573514 ⟹ XP_038429442

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	25	17,665,664 - 17,810,580 (+)	NCBI

RefSeq Acc Id:

XM_038573515 ⟹ XP_038429443

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	25	17,665,268 - 17,810,580 (+)	NCBI

RefSeq Acc Id:

XM_038637815 ⟹ XP_038493743

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	25	17,609,047 - 17,753,939 (+)	NCBI

RefSeq Acc Id:

XM_038637816 ⟹ XP_038493744

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	25	17,608,651 - 17,753,939 (+)	NCBI

RefSeq Acc Id:

XM_543175 ⟹ XP_543175

RefSeq Status:

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	25	17,588,819 - 17,733,754 (+)	NCBI
Dog10K_Boxer_Tasha	25	17,619,484 - 17,764,441 (+)	NCBI

Sequence:

show sequence

GAGGACGCCCCTCCCGGCGCGGGGACCCGGCGCTACGCGCGGCGCGCGAGAGCCGGTGGGCCTC
AGTCCTCTGCACTGGCGGTGGGGTCCCGGGCCGGGCAGGTGTGCGGCCATGGCGTCCTCGGAGC
CCGGCGACGTGCTGATCCTCGGCAGTGGACTCATTGGGCGAAGCTGGGCTATGTTGTTTGCCAG
TGGAGGCTTCAAGGTGAAACTCTATGATATTGAGCAACAGCAGGTAACAAATGCCTTGGAAACC
ATCAGGAAAGAGATGAAGATTCTGGAGCAGTCAGGTTCTCTGAGAGGCTCCCTGAGTTCTGAAG
AACAGCTGTCACTCATCAGTGGTTGTTCAAATATTCAAGCGGCAGTAGAGGGCGCTGGGCACAT
TCAGGAATGTGTTCCAGAAAACCTAGAGCTGAAGAAGAAGATTTTTGCTCAGTTAGATCAAATT
GTCGACGATAAAGTTGTCTTAAGCAGCTCCACCTCTTGCCTCCTGCCTTCTAAGCTGTTTGCTG
GCCTGGCGCACGTGAAGCAGTGCCTTGTTGTCCATCCGGTAAACCCACCGTACTACGTGCCATT
GGTTGAGCTGGTCCCACACCCGGAGACGGCTCCTGCGACAATGGACAGAACCTACGCCCTGATG
CAGAAGATTGGACAGTCCCCAGTCAGAATCATGAAGGAGATTGAAGGCTTTGCCCTGAATCGCC
TTCAGTATGCCATCATCGGTGAGGCCTGGCGGCTCGTGGAGGAAGGAATAGTTTCTCCGAGTGA
CCTTGACCTTGTCATGTCAGATGGCCTGGGCATGCGGTATGCATTCATCGGACCCTTAGAAACT
ATGCATCTCAATGCAGAAGGTATGTTAAACTACTGTGACAGATACAGGGAAGGCATGAAACGTG
TCCTGAAGACTTTTGGGCCCATTCCAGACTTTTCCAGGGCCACCACTGAAAAAGTTAACCAGGC
CATGTGTGTGAATGTTCCTGATGACCCAGAGCACTTAGGCGCCAGAAGGCAGTGGAGGGACGAG
TGTCTCCTGAGACTGGCCAAGTTGAAGAGGCAGATGCAGTCCCAGTAAAGCTTCCTGCTGAGCT
CCCATCCTTCGTTATTGGGAGTCCTCGTTGGGAGAATCACAAGCACTTAATTGAACCTGGAGGC
CAGGTGGTCTTCATGCAGATTCAATGGTGGGGCCACAGCGGTGGGGCTGAGAGGTCCTCTGATC
ACTCCCTGGCCTTGGGTGTCACAGCTGCACTGGAATCTGAGGGCTGTTGGCTCCCTGCAACTTG
GGCAAGCAAGAGAACAAATCGTCTGAAGATTTTCACCTTTTATTTTTAGAGATTCCATACAGCG
GCATTTTATAGCCAATGATTGTGGTTTCAAGTTTATTTTAATCTGTAGCAAAGTTTTGTAATGA
TTTTCTAATCTCTTTCTGAGTACTCTGTGGCCCTGCATTATGAGGCACCTACCTTCATTTTGCT
AATGCTTATTCTGAATAAAAGTCTTTCCTTGCATAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_022265391	(Get FASTA)	NCBI Sequence Viewer
	XP_038291032	(Get FASTA)	NCBI Sequence Viewer
	XP_038291033	(Get FASTA)	NCBI Sequence Viewer
	XP_038366008	(Get FASTA)	NCBI Sequence Viewer
	XP_038429442	(Get FASTA)	NCBI Sequence Viewer
	XP_038429443	(Get FASTA)	NCBI Sequence Viewer
	XP_038493743	(Get FASTA)	NCBI Sequence Viewer
	XP_038493744	(Get FASTA)	NCBI Sequence Viewer
	XP_543175	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	XP_543175 ⟸ XM_543175
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0JHI9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASSEPGDVLILGSGLIGRSWAMLFASGGFKVKLYDIEQQQVTNALETIRKEMKILEQSGSLRG SLSSEEQLSLISGCSNIQAAVEGAGHIQECVPENLELKKKIFAQLDQIVDDKVVLSSSTSCLLP SKLFAGLAHVKQCLVVHPVNPPYYVPLVELVPHPETAPATMDRTYALMQKIGQSPVRIMKEIEG FALNRLQYAIIGEAWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLNAEGMLNYCDRYR EGMKRVLKTFGPIPDFSRATTEKVNQAMCVNVPDDPEHLGARRQWRDECLLRLAKLKRQMQSQ hide sequence

RefSeq Acc Id:

XP_022265391 ⟸ XM_022409683

- Peptide Label:

isoform X2

- Sequence:

show sequence

MLFASGGFKVKLYDIEQQQVTNALETIRKEMKILEQSGSLRGSLSSEEQLSLISGCSNIQAAVE
GAGHIQECVPENLELKKKIFAQLDQIVDDKVVLSSSTSCLLPSKLFAGLAHVKQCLVVHPVNPP
YYVPLVELVPHPETAPATMDRTYALMQKIGQSPVRIMKEIEGFALNRLQYAIIGEAWRLVEEGI
VSPSDLDLVMSDGLGMRYAFIGPLETMHLNAEGMLNYCDRYREGMKRVLKTFGPIPDFSRATTE
KVNQAMCVNVPDDPEHLGARRQWRDECLLRLAKLKRQMQSQ

hide sequence

RefSeq Acc Id:

ENSCAFP00000045985 ⟸ ENSCAFT00000088227

RefSeq Acc Id:

ENSCAFP00000054330 ⟸ ENSCAFT00000088271

RefSeq Acc Id:

ENSCAFP00000010819 ⟸ ENSCAFT00000011676

RefSeq Acc Id:

ENSCAFP00000044201 ⟸ ENSCAFT00000087275

RefSeq Acc Id:

ENSCAFP00000053315 ⟸ ENSCAFT00000087696

RefSeq Acc Id:	XP_038366008 ⟸ XM_038510080
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038493744 ⟸ XM_038637816
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038493743 ⟸ XM_038637815
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038291033 ⟸ XM_038435105
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038291032 ⟸ XM_038435104
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0JHI9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038429443 ⟸ XM_038573515
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038429442 ⟸ XM_038573514
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSCAFP00845032079 ⟸ ENSCAFT00845040951

RefSeq Acc Id:

ENSCAFP00845032131 ⟸ ENSCAFT00845041012

RefSeq Acc Id:

ENSCAFP00845032198 ⟸ ENSCAFT00845041087

RefSeq Acc Id:

ENSCAFP00845032008 ⟸ ENSCAFT00845040875

Protein Domains

3-hydroxyacyl-CoA dehydrogenase C-terminal 3-hydroxyacyl-CoA dehydrogenase NAD binding

Promoters

RGD ID:

13687743

Promoter ID:

EPDNEW_C5810

Type:

single initiation site

Name:

CRYL1_1

Description:

crystallin lambda 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	25	17,588,692 - 17,588,752	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000007288	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00845023166	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSCAFP00000010819.3	UniProtKB/TrEMBL
	ENSCAFP00000044201.1	UniProtKB/TrEMBL
	ENSCAFP00000053315.1	UniProtKB/TrEMBL
	ENSCAFP00845032008	ENTREZGENE
	ENSCAFP00845032008.1	UniProtKB/TrEMBL
	ENSCAFP00845032079	ENTREZGENE
	ENSCAFP00845032079.1	UniProtKB/TrEMBL
	ENSCAFP00845032131.1	UniProtKB/TrEMBL
	ENSCAFP00845032198.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000011676.5	UniProtKB/TrEMBL
	ENSCAFT00000087275.2	UniProtKB/TrEMBL
	ENSCAFT00000087696.2	UniProtKB/TrEMBL
	ENSCAFT00845040875	ENTREZGENE
	ENSCAFT00845040875.1	UniProtKB/TrEMBL
	ENSCAFT00845040951	ENTREZGENE
	ENSCAFT00845040951.1	UniProtKB/TrEMBL
	ENSCAFT00845041012.1	UniProtKB/TrEMBL
	ENSCAFT00845041087.1	UniProtKB/TrEMBL
Gene3D-CATH	NAD(P)-binding Rossmann-like Domain	UniProtKB/TrEMBL
InterPro	3-OHacyl-CoA_DH	UniProtKB/TrEMBL
	3-OHacyl-CoA_DH_CS	UniProtKB/TrEMBL
	3-OHacyl-CoA_DH_NAD-bd	UniProtKB/TrEMBL
	3HC_DH_C	UniProtKB/TrEMBL
	6-PGluconate_DH-like_C_sf	UniProtKB/TrEMBL
	6PGD_dom2	UniProtKB/TrEMBL
	NAD(P)-bd_dom_sf	UniProtKB/TrEMBL
NCBI Gene	CRYL1	ENTREZGENE
PANTHER	3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN	UniProtKB/TrEMBL
	LAMBDA-CRYSTALLIN HOMOLOG	UniProtKB/TrEMBL
Pfam	3HCDH	UniProtKB/TrEMBL
	3HCDH_N	UniProtKB/TrEMBL
PIRSF	HCDH	UniProtKB/TrEMBL
PROSITE	3HCDH	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48179	UniProtKB/TrEMBL
	SSF51735	UniProtKB/TrEMBL
UniProt	A0A8C0JHI9	ENTREZGENE
	A0A8I3PDK8_CANLF	UniProtKB/TrEMBL
	A0A8I3PL54_CANLF	UniProtKB/TrEMBL
	A0A8I3PMR8_CANLF	UniProtKB/TrEMBL
	A0A8I3S6Q6_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:39647	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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