OR4C10 (olfactory receptor family 4 subfamily C member 10) - Rat Genome Database

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Gene: OR4C10 (olfactory receptor family 4 subfamily C member 10) Canis lupus familiaris
Analyze
No known orthologs.
Symbol: OR4C10
Name: olfactory receptor family 4 subfamily C member 10
RGD ID: 12075993
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: cOR4C43; cOR4C43 olfactory receptor family 4 subfamily C-like; olfactory receptor 4C46
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11841,376,437 - 41,377,369 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1841,376,440 - 41,377,369 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.01842,031,112 - 42,032,041 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1842,031,112 - 42,032,041 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11841,509,802 - 41,510,731 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01841,072,970 - 41,073,899 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01841,802,289 - 41,803,218 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14962662   PMID:22301074  


Genomics

Variants

.
Variants in OR4C10
9 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system integumental system musculoskeletal system reproductive system respiratory system
High
Medium
Low 1
Below cutoff 1 3 1 6 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000044095   ⟹   ENSCAFP00000040272
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1841,376,440 - 41,377,369 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845031741   ⟹   ENSCAFP00845024841
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1842,031,112 - 42,032,041 (+)Ensembl
RefSeq Acc Id: NM_001388639   ⟹   NP_001375568
RefSeq Status: INFERRED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01842,031,112 - 42,032,041 (+)NCBI
UMICH_Zoey_3.11841,509,802 - 41,510,731 (+)NCBI
UNSW_CanFamBas_1.01841,072,970 - 41,073,899 (+)NCBI
UU_Cfam_GSD_1.01841,802,289 - 41,803,218 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001375568 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00030008949.1
  ENSCAFP00040022942.1
  ENSCAFP00845024841
  ENSCAFP00845024841.1
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000040272   ⟸   ENSCAFT00000044095
RefSeq Acc Id: NP_001375568   ⟸   NM_001388639
- UniProtKB: A0A8C0SKB2 (UniProtKB/TrEMBL),   A0A8C0LQC3 (UniProtKB/TrEMBL),   A0A8I3P9R8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845024841   ⟸   ENSCAFT00845031741
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000032072 Ensembl
  ENSCAFG00030005588 UniProtKB/TrEMBL
  ENSCAFG00040014315 UniProtKB/TrEMBL
  ENSCAFG00845017936 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030010224.1 UniProtKB/TrEMBL
  ENSCAFT00040026394.1 UniProtKB/TrEMBL
  ENSCAFT00845031741 ENTREZGENE
  ENSCAFT00845031741.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene cOR4C43 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C0LQC3 ENTREZGENE
  A0A8C0SKB2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P9R8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:84710 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-01-14 OR4C10  olfactory receptor family 4 subfamily C member 10  cOR4C43  cOR4C43 olfactory receptor family 4 subfamily C-like  Symbol and/or name change 5135510 APPROVED