PLA2G3 (phospholipase A2 group III) - Rat Genome Database

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Gene: PLA2G3 (phospholipase A2 group III) Canis lupus familiaris
Analyze
Symbol: PLA2G3
Name: phospholipase A2 group III
RGD ID: 12075173
Description: ENCODES a protein that exhibits calcium-dependent phospholipase A2 activity (inferred); phospholipase A2 activity (inferred); phospholipase activity (inferred); INVOLVED IN acrosome assembly (ortholog); cell development (ortholog); cell maturation (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN centriole (inferred); extracellular region (inferred); recycling endosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: group 3 secretory phospholipase A2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12624,127,074 - 24,132,508 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2624,128,005 - 24,132,508 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2623,994,204 - 24,002,589 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02624,506,855 - 24,515,226 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2624,510,739 - 24,515,226 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12624,210,260 - 24,218,645 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02624,472,253 - 24,480,619 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02624,533,532 - 24,541,902 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
PLA2G3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12624,127,074 - 24,132,508 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2624,128,005 - 24,132,508 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2623,994,204 - 24,002,589 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02624,506,855 - 24,515,226 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2624,510,739 - 24,515,226 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12624,210,260 - 24,218,645 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02624,472,253 - 24,480,619 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02624,533,532 - 24,541,902 (-)NCBIUU_Cfam_GSD_1.0
PLA2G3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382231,134,807 - 31,140,508 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2231,134,807 - 31,140,508 (-)EnsemblGRCh38hg38GRCh38
GRCh372231,530,793 - 31,536,494 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362229,860,793 - 29,866,469 (-)NCBINCBI36Build 36hg18NCBI36
Build 342229,855,346 - 29,861,023NCBI
Celera2215,330,868 - 15,336,544 (-)NCBICelera
Cytogenetic Map22q12.2NCBI
HuRef2214,492,451 - 14,498,127 (-)NCBIHuRef
CHM1_12231,490,658 - 31,496,334 (-)NCBICHM1_1
T2T-CHM13v2.02231,598,311 - 31,604,012 (-)NCBIT2T-CHM13v2.0
Pla2g3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39113,438,158 - 3,449,346 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl113,438,284 - 3,449,350 (+)EnsemblGRCm39 Ensembl
GRCm38113,488,158 - 3,499,346 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl113,488,284 - 3,499,350 (+)EnsemblGRCm38mm10GRCm38
MGSCv37113,388,230 - 3,394,169 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36113,388,302 - 3,399,353 (+)NCBIMGSCv36mm8
Celera113,979,003 - 3,985,078 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.45NCBI
Pla2g3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81482,589,908 - 82,597,542 (+)NCBIGRCr8
mRatBN7.21478,367,625 - 78,373,913 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1478,368,105 - 78,373,913 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1482,809,429 - 82,815,114 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01484,049,536 - 84,055,220 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01480,495,298 - 80,500,983 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01483,724,828 - 83,730,614 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1483,724,933 - 83,730,614 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01484,412,999 - 84,418,680 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41484,119,872 - 84,125,552 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11484,130,645 - 84,143,800 (+)NCBI
Celera1477,281,569 - 77,287,249 (+)NCBICelera
Cytogenetic Map14q21NCBI
Pla2g3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554555,315,450 - 5,320,053 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554555,314,520 - 5,320,151 (-)NCBIChiLan1.0ChiLan1.0
PLA2G3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22341,090,380 - 41,100,730 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12243,788,928 - 43,799,272 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02212,158,589 - 12,164,441 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12229,995,364 - 30,001,160 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2229,995,364 - 30,001,160 (-)Ensemblpanpan1.1panPan2
Pla2g3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118117,049,648 - 117,058,557 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936755306,313 - 312,683 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936755307,166 - 312,683 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLA2G3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1447,923,954 - 47,928,810 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11447,923,005 - 47,928,762 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21451,034,721 - 51,040,254 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PLA2G3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11914,025,373 - 14,033,214 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1914,025,742 - 14,030,643 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045112,087,770 - 112,093,291 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pla2g3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247477,603,277 - 7,607,753 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247477,602,848 - 7,607,872 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PLA2G3
47 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 3
Low 3 5 3 1 8
Below cutoff 2 4 9 1 2 11 5 2 2

Sequence


RefSeq Acc Id: ENSCAFT00000020599   ⟹   ENSCAFP00000019117
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2624,128,005 - 24,132,508 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000035185   ⟹   ENSCAFP00000030417
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2624,128,005 - 24,132,508 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845039214   ⟹   ENSCAFP00845030714
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2624,510,739 - 24,515,226 (-)Ensembl
RefSeq Acc Id: XM_038437280   ⟹   XP_038293208
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02624,506,855 - 24,515,226 (-)NCBI
RefSeq Acc Id: XM_038512177   ⟹   XP_038368105
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12624,210,260 - 24,218,645 (-)NCBI
RefSeq Acc Id: XM_038575678   ⟹   XP_038431606
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02624,533,532 - 24,541,902 (-)NCBI
RefSeq Acc Id: XM_038639873   ⟹   XP_038495801
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02624,472,253 - 24,480,619 (-)NCBI
RefSeq Acc Id: XM_543487   ⟹   XP_543487
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12624,127,074 - 24,132,508 (-)NCBI
Dog10K_Boxer_Tasha2623,994,204 - 24,002,589 (-)NCBI
Sequence:
RefSeq Acc Id: XP_543487   ⟸   XM_543487
- UniProtKB: A0A8C0JM46 (UniProtKB/TrEMBL),   A0A8C0TLK4 (UniProtKB/TrEMBL),   A0A8I3PFI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000030417   ⟸   ENSCAFT00000035185
RefSeq Acc Id: ENSCAFP00000019117   ⟸   ENSCAFT00000020599
RefSeq Acc Id: XP_038368105   ⟸   XM_038512177
RefSeq Acc Id: XP_038495801   ⟸   XM_038639873
RefSeq Acc Id: XP_038293208   ⟸   XM_038437280
- UniProtKB: A0A8C0JM46 (UniProtKB/TrEMBL),   A0A8C0TLK4 (UniProtKB/TrEMBL),   A0A8I3PFI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038431606   ⟸   XM_038575678
- UniProtKB: A0A8C0JM46 (UniProtKB/TrEMBL),   A0A8C0TLK4 (UniProtKB/TrEMBL),   A0A8I3PFI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845030714   ⟸   ENSCAFT00845039214
Protein Domains
Phospholipase A2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012981 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030018638 UniProtKB/TrEMBL
  ENSCAFG00040023639 UniProtKB/TrEMBL
  ENSCAFG00845022232 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000020599.5 UniProtKB/TrEMBL
  ENSCAFT00030034356.1 UniProtKB/TrEMBL
  ENSCAFT00040044018.1 UniProtKB/TrEMBL
  ENSCAFT00845039214 ENTREZGENE
  ENSCAFT00845039214.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.90.10 UniProtKB/TrEMBL
InterPro PLipase_A2_dom UniProtKB/TrEMBL
  PLipase_A2_dom_sf UniProtKB/TrEMBL
  PLipase_A2_His_AS UniProtKB/TrEMBL
KEGG Report cfa:486361 UniProtKB/TrEMBL
NCBI Gene PLA2G3 ENTREZGENE
PANTHER GROUP 3 SECRETORY PHOSPHOLIPASE A2 UniProtKB/TrEMBL
  RH14732P UniProtKB/TrEMBL
Pfam Phospholip_A2_2 UniProtKB/TrEMBL
PROSITE PA2_HIS UniProtKB/TrEMBL
Superfamily-SCOP SSF48619 UniProtKB/TrEMBL
UniProt A0A8C0JM46 ENTREZGENE
  A0A8C0TLK4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PFI3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:44625 ENTREZGENE