SFN (stratifin) - Rat Genome Database

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Gene: SFN (stratifin) Canis lupus familiaris
Analyze
Symbol: SFN
Name: stratifin
RGD ID: 12074273
Description: ENCODES a protein that exhibits identical protein binding (ortholog); phosphoprotein binding (ortholog); phosphoserine residue binding (ortholog); INVOLVED IN establishment of skin barrier (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage (ortholog); keratinization (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; mTOR signaling pathway; phosphatidylinositol 3-kinase-Akt signaling pathway; ASSOCIATED WITH endometrial carcinoma (ortholog); Esophageal Neoplasms (ortholog); esophagus squamous cell carcinoma (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 14-3-3 protein sigma
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1273,268,289 - 73,269,663 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl273,268,791 - 73,269,537 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha269,846,343 - 69,847,691 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0273,832,085 - 73,833,433 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1270,657,031 - 70,658,379 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,662,570 - 71,663,918 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0272,665,732 - 72,667,080 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202   PMID:30168069  


Genomics

Comparative Map Data
SFN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1273,268,289 - 73,269,663 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl273,268,791 - 73,269,537 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha269,846,343 - 69,847,691 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0273,832,085 - 73,833,433 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1270,657,031 - 70,658,379 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,662,570 - 71,663,918 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0272,665,732 - 72,667,080 (-)NCBIUU_Cfam_GSD_1.0
SFN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,863,149 - 26,864,456 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,863,149 - 26,864,456 (+)EnsemblGRCh38hg38GRCh38
GRCh37127,189,640 - 27,190,947 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,062,220 - 27,063,534 (+)NCBINCBI36Build 36hg18NCBI36
Build 34126,873,774 - 26,875,089NCBI
Celera125,586,728 - 25,588,042 (+)NCBICelera
Cytogenetic Map1p36.11NCBI
HuRef125,443,317 - 25,444,639 (+)NCBIHuRef
CHM1_1127,302,848 - 27,304,162 (+)NCBICHM1_1
T2T-CHM13v2.0126,701,224 - 26,702,527 (+)NCBIT2T-CHM13v2.0
Sfn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394133,327,867 - 133,329,163 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4133,327,867 - 133,329,479 (-)EnsemblGRCm39 Ensembl
GRCm384133,600,556 - 133,602,168 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4133,600,556 - 133,602,168 (-)EnsemblGRCm38mm10GRCm38
MGSCv374133,156,471 - 133,158,083 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364132,872,632 - 132,873,884 (-)NCBIMGSCv36mm8
Celera4131,765,686 - 131,767,298 (-)NCBICelera
Cytogenetic Map4D2.3NCBI
cM Map466.25NCBI
Sfn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85151,110,582 - 151,111,854 (-)NCBIGRCr8
mRatBN7.25145,826,722 - 145,827,994 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5145,826,201 - 145,831,314 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.05151,823,422 - 151,824,937 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5151,823,887 - 151,824,633 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05155,512,802 - 155,514,320 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45151,475,395 - 151,479,996 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15151,485,433 - 151,490,434 (+)NCBI
Celera5144,247,261 - 144,248,776 (-)NCBICelera
Cytogenetic Map5q36NCBI
Sfn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554526,217,698 - 6,218,444 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554526,217,519 - 6,218,481 (+)NCBIChiLan1.0ChiLan1.0
SFN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21200,004,931 - 200,006,544 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11199,109,040 - 199,110,562 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0126,126,212 - 26,127,761 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1127,182,629 - 27,184,075 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl127,182,834 - 27,183,580 (+)Ensemblpanpan1.1panPan2
Sfn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505845,450,127 - 45,454,645 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647411,246,534 - 11,279,433 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647411,274,927 - 11,279,427 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SFN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl684,188,445 - 84,189,827 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1684,188,521 - 84,189,824 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2677,750,656 - 77,760,032 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SFN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120105,902,481 - 105,904,313 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20105,902,974 - 105,903,720 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603310,524,809 - 10,527,364 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sfn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476410,859,667 - 10,860,413 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476410,859,556 - 10,860,876 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SFN
5 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 6
Low 3 2 9 1 3 1 2 8 6 4
Below cutoff 2 3 13 5 3 5 4 4 6 4 2

Sequence


RefSeq Acc Id: ENSCAFT00000019518   ⟹   ENSCAFP00000018103
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl273,268,791 - 73,269,537 (-)Ensembl
RefSeq Acc Id: XM_005617741   ⟹   XP_005617798
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1273,268,289 - 73,269,663 (-)NCBI
Dog10K_Boxer_Tasha269,846,343 - 69,847,691 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038470599   ⟹   XP_038326527
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1270,657,031 - 70,658,379 (-)NCBI
RefSeq Acc Id: XM_038531442   ⟹   XP_038387370
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0272,665,732 - 72,667,080 (-)NCBI
RefSeq Acc Id: XM_038595665   ⟹   XP_038451593
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0271,662,570 - 71,663,918 (-)NCBI
RefSeq Acc Id: XM_038659744   ⟹   XP_038515672
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0273,832,085 - 73,833,433 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005617798 (Get FASTA)   NCBI Sequence Viewer  
  XP_038326527 (Get FASTA)   NCBI Sequence Viewer  
  XP_038387370 (Get FASTA)   NCBI Sequence Viewer  
  XP_038451593 (Get FASTA)   NCBI Sequence Viewer  
  XP_038515672 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00030021058.1
RefSeq Acc Id: XP_005617798   ⟸   XM_005617741
- UniProtKB: A0A8C0LBL5 (UniProtKB/TrEMBL),   A0A8C0N3J1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000018103   ⟸   ENSCAFT00000019518
RefSeq Acc Id: XP_038326527   ⟸   XM_038470599
RefSeq Acc Id: XP_038451593   ⟸   XM_038595665
RefSeq Acc Id: XP_038515672   ⟸   XM_038659744
- UniProtKB: A0A8C0LBL5 (UniProtKB/TrEMBL),   A0A8C0N3J1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387370   ⟸   XM_038531442
- UniProtKB: A0A8C0LBL5 (UniProtKB/TrEMBL),   A0A8C0N3J1 (UniProtKB/TrEMBL)
Protein Domains
14-3-3

Promoters
RGD ID:13682586
Promoter ID:EPDNEW_C654
Type:single initiation site
Name:SFN_1
Description:stratifin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1273,269,599 - 73,269,659EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012290 Ensembl
  ENSCAFG00030013078 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030024151.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.190.20 UniProtKB/TrEMBL
InterPro 14-3-3 UniProtKB/TrEMBL
  14-3-3_CS UniProtKB/TrEMBL
  14-3-3_dom_sf UniProtKB/TrEMBL
  14-3-3_domain UniProtKB/TrEMBL
  14-3-3_sigma UniProtKB/TrEMBL
KEGG Report cfa:487351 UniProtKB/TrEMBL
NCBI Gene SFN ENTREZGENE
PANTHER 14-3-3 PROTEIN SIGMA UniProtKB/TrEMBL
  PTHR18860 UniProtKB/TrEMBL
Pfam 14-3-3 UniProtKB/TrEMBL
PIRSF 14-3-3 UniProtKB/TrEMBL
PRINTS 1433ZETA UniProtKB/TrEMBL
PROSITE 1433_1 UniProtKB/TrEMBL
  1433_2 UniProtKB/TrEMBL
SMART 14_3_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF48445 UniProtKB/TrEMBL
UniProt A0A8C0LBL5 ENTREZGENE
  A0A8C0N3J1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:46078 ENTREZGENE