VIM (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 2 | 19,671,316 - 19,679,367 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 2 | 19,671,316 - 19,679,466 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 2 | 16,774,615 - 16,782,665 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 2 | 19,962,890 - 19,970,942 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 2 | 19,941,383 - 19,970,947 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 2 | 17,165,331 - 17,173,380 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 2 | 18,003,247 - 18,011,326 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 2 | 18,621,519 - 18,629,571 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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VIM (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 10 | 17,228,241 - 17,237,593 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 10 | 17,228,241 - 17,237,593 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 10 | 17,270,240 - 17,279,592 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 10 | 17,311,304 - 17,319,598 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 10 | 17,311,308 - 17,319,594 | NCBI | | | | | Celera | 10 | 17,203,520 - 17,212,854 (+) | NCBI | | Celera | | | Cytogenetic Map | 10 | p13 | NCBI | | | | | HuRef | 10 | 17,183,488 - 17,192,823 (+) | NCBI | | HuRef | | | CHM1_1 | 10 | 17,270,372 - 17,279,705 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 10 | 17,246,786 - 17,256,137 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Vim (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 2 | 13,579,122 - 13,587,637 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 2 | 13,578,738 - 13,587,637 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 2 | 13,574,311 - 13,582,826 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 2 | 13,573,927 - 13,582,826 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 2 | 13,495,938 - 13,504,453 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 2 | 13,491,805 - 13,500,660 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 2 | 13,484,803 - 13,493,320 (+) | NCBI | | Celera | | | Cytogenetic Map | 2 | A1 | NCBI | | | | | cM Map | 2 | 10.04 | NCBI | | | | |
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Vim (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 17 | 81,577,261 - 81,585,746 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 17 | 76,668,701 - 76,677,186 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 17 | 76,668,647 - 76,677,187 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 17 | 80,141,211 - 80,149,708 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 17 | 83,976,613 - 83,985,110 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 17 | 78,024,506 - 78,033,003 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 17 | 80,882,715 - 80,891,200 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 17 | 80,882,666 - 80,891,212 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 17 | 82,500,898 - 82,509,383 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 17 | 87,847,280 - 87,855,763 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 17 | 87,858,112 - 87,866,596 (+) | NCBI | | | | | Celera | 17 | 76,037,845 - 76,046,329 (+) | NCBI | | Celera | | | Cytogenetic Map | 17 | q12.3 | NCBI | | | | |
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Vim (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChiLan1.0 Ensembl | NW_004955429 | 10,707,719 - 10,717,554 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955429 | 10,708,852 - 10,716,743 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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VIM (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | 8 | 30,070,175 - 30,080,269 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 10 | 30,073,747 - 30,085,591 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 10 | 17,546,389 - 17,554,702 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 10 | 17,818,285 - 17,826,642 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 10 | 17,818,285 - 17,826,642 (+) | Ensembl | panpan1.1 | | panPan2 | |
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Vim (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024409344 | 17,901,147 - 17,908,782 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936520 | 10,052,012 - 10,059,182 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936520 | 10,051,692 - 10,059,324 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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VIM (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 10 | 43,517,307 - 43,526,170 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 10 | 43,516,441 - 43,526,172 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 10 | 48,225,950 - 48,235,670 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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VIM (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 9 | 17,183,466 - 17,191,771 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 9 | 17,183,388 - 17,191,829 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666051 | 22,821,093 - 22,830,717 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Vim (Heterocephalus glaber - naked mole-rat) |
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