TNFRSF18 (TNF receptor superfamily member 18) - Rat Genome Database

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Gene: TNFRSF18 (TNF receptor superfamily member 18) Canis lupus familiaris
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Symbol: TNFRSF18
Name: TNF receptor superfamily member 18
RGD ID: 12072219
Description: ENCODES a protein that exhibits tumor necrosis factor receptor activity (inferred); INVOLVED IN positive regulation of tyrosine phosphorylation of STAT protein (ortholog); ASSOCIATED WITH anogenital venereal wart (ortholog); chromosome 1p36 deletion syndrome (ortholog); congenital myasthenic syndrome 8 (ortholog); FOUND IN external side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GITR; glucocorticoid-induced TNFR-related; tumor necrosis factor receptor superfamily member 18
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,394,559 - 56,397,502 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,394,659 - 56,397,741 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha556,471,888 - 56,474,440 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0556,597,800 - 56,600,352 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl556,597,546 - 56,600,352 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1556,588,543 - 56,591,095 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,480,829 - 56,483,381 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0556,870,818 - 56,873,370 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TNFRSF18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,394,559 - 56,397,502 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,394,659 - 56,397,741 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha556,471,888 - 56,474,440 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0556,597,800 - 56,600,352 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl556,597,546 - 56,600,352 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1556,588,543 - 56,591,095 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,480,829 - 56,483,381 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0556,870,818 - 56,873,370 (-)NCBIUU_Cfam_GSD_1.0
TNFRSF18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,203,508 - 1,206,592 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,203,508 - 1,206,592 (-)EnsemblGRCh38hg38GRCh38
GRCh3711,138,888 - 1,141,972 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,128,751 - 1,131,952 (-)NCBINCBI36Build 36hg18NCBI36
Celera11,441,567 - 1,444,768 (+)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef1410,603 - 413,804 (-)NCBIHuRef
CHM1_111,125,362 - 1,128,563 (-)NCBICHM1_1
T2T-CHM13v2.01631,965 - 635,049 (-)NCBIT2T-CHM13v2.0
Tnfrsf18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394156,110,779 - 156,113,351 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4156,110,621 - 156,113,352 (+)EnsemblGRCm39 Ensembl
GRCm384156,026,322 - 156,028,894 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4156,026,164 - 156,028,895 (+)EnsemblGRCm38mm10GRCm38
MGSCv374155,400,451 - 155,403,000 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364154,870,142 - 154,872,691 (+)NCBIMGSCv36mm8
Celera4158,288,886 - 158,291,431 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map487.76NCBI
Tnfrsf18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,901,734 - 171,904,578 (+)NCBIGRCr8
mRatBN7.25166,618,461 - 166,622,353 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,618,969 - 166,622,353 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5169,323,289 - 169,325,887 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05171,144,711 - 171,147,309 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05171,107,243 - 171,109,841 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,459,371 - 173,463,980 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,460,354 - 173,463,140 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,933,400 - 176,938,350 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,869,196 - 172,871,795 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5164,820,612 - 164,823,210 (+)NCBICelera
Cytogenetic Map5q36NCBI
Tnfrsf18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554869,571,530 - 9,573,733 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554869,571,527 - 9,573,733 (+)NCBIChiLan1.0ChiLan1.0
TNFRSF18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21227,018,219 - 227,022,812 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11225,714,938 - 225,719,522 (+)NCBINHGRI_mPanPan1
PanPan1.111,160,540 - 1,163,839 (-)NCBIpanpan1.1PanPan1.1panPan2
Tnfrsf18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505827,555,513 - 27,560,643 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367371,905,307 - 1,910,356 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFRSF18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,516,045 - 63,518,405 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,516,037 - 63,519,323 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2658,018,980 - 58,021,594 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TNFRSF18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120130,237,950 - 130,243,303 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20130,225,847 - 130,242,251 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605434,806,938 - 34,812,229 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnfrsf18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248188,378,131 - 8,379,974 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248188,376,204 - 8,380,266 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TNFRSF18
15 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 32 21 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000030704   ⟹   ENSCAFP00000028538
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl556,394,659 - 56,397,741 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845040419   ⟹   ENSCAFP00845031649
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl556,597,546 - 56,600,352 (-)Ensembl
RefSeq Acc Id: NM_001190744   ⟹   NP_001177673
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1556,394,913 - 56,397,465 (-)NCBI
Dog10K_Boxer_Tasha556,471,888 - 56,474,440 (-)NCBI
ROS_Cfam_1.0556,597,800 - 56,600,352 (-)NCBI
UMICH_Zoey_3.1556,588,543 - 56,591,095 (-)NCBI
UNSW_CanFamBas_1.0556,480,829 - 56,483,381 (-)NCBI
UU_Cfam_GSD_1.0556,870,818 - 56,873,370 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001177673 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ADB96918 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000028538.5
  ENSCAFP00030000075.1
  ENSCAFP00040005267.1
  ENSCAFP00845031649
  ENSCAFP00845031649.1
RefSeq Acc Id: NP_001177673   ⟸   NM_001190744
- Peptide Label: precursor
- UniProtKB: D7F619 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000028538   ⟸   ENSCAFT00000030704
Ensembl Acc Id: ENSCAFP00845031649   ⟸   ENSCAFT00845040419


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019329 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030000077 UniProtKB/TrEMBL
  ENSCAFG00040003218 UniProtKB/TrEMBL
  ENSCAFG00845022900 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000030704.5 UniProtKB/TrEMBL
  ENSCAFT00030000093.1 UniProtKB/TrEMBL
  ENSCAFT00040006102.1 UniProtKB/TrEMBL
  ENSCAFT00845040419 ENTREZGENE
  ENSCAFT00845040419.1 UniProtKB/TrEMBL
Gene3D-CATH Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/TrEMBL
InterPro TNFR_18 UniProtKB/TrEMBL
  TNFRSF18 UniProtKB/TrEMBL
  TNFRSF18_N UniProtKB/TrEMBL
KEGG Report cfa:606971 UniProtKB/TrEMBL
NCBI Gene TNFRSF18 ENTREZGENE
PANTHER TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 18 UniProtKB/TrEMBL
  TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 18 UniProtKB/TrEMBL
PRINTS TNFACTORR18 UniProtKB/TrEMBL
UniProt A0A8C0Q586_CANLF UniProtKB/TrEMBL
  A0A8I3PLK9_CANLF UniProtKB/TrEMBL
  D7F619 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:47660 ENTREZGENE