BET1L (Bet1 golgi vesicular membrane trafficking protein like) - Rat Genome Database

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Gene: BET1L (Bet1 golgi vesicular membrane trafficking protein like) Canis lupus familiaris
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Symbol: BET1L
Name: Bet1 golgi vesicular membrane trafficking protein like
RGD ID: 12071576
Description: ENCODES a protein that exhibits SNAP receptor activity (inferred); INVOLVED IN membrane fusion (inferred); protein transport (inferred); regulation of retrograde vesicle-mediated transport, Golgi to ER (inferred); ASSOCIATED WITH endometrial adenocarcinoma (ortholog); genetic disease (ortholog); uterine fibroid (ortholog); FOUND IN Golgi membrane (ortholog); Golgi stack (ortholog); Golgi-associated vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BET1-like protein; blocked early in transport 1 homolog (S. cerevisiae)-like; blocked early in transport 1 homolog-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11825,358,517 - 25,361,944 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1825,360,636 - 25,361,299 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1825,008,498 - 25,011,892 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01825,885,095 - 25,888,488 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1825,885,100 - 25,888,467 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11825,453,118 - 25,456,508 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01825,097,901 - 25,101,285 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01825,710,708 - 25,714,130 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
BET1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11825,358,517 - 25,361,944 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1825,360,636 - 25,361,299 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1825,008,498 - 25,011,892 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01825,885,095 - 25,888,488 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1825,885,100 - 25,888,467 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11825,453,118 - 25,456,508 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01825,097,901 - 25,101,285 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01825,710,708 - 25,714,130 (-)NCBIUU_Cfam_GSD_1.0
BET1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811202,924 - 207,399 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11167,784 - 207,399 (-)EnsemblGRCh38hg38GRCh38
GRCh3711202,924 - 207,399 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611192,924 - 197,422 (-)NCBINCBI36Build 36hg18NCBI36
Celera11351,440 - 355,953 (+)NCBICelera
Cytogenetic Map11p15.5NCBI
HuRef1122,927 - 27,440 (-)NCBIHuRef
CHM1_111201,578 - 206,097 (-)NCBICHM1_1
T2T-CHM13v2.011244,102 - 248,598 (-)NCBIT2T-CHM13v2.0
Bet1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397140,433,297 - 140,437,306 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7140,433,307 - 140,437,490 (-)EnsemblGRCm39 Ensembl
GRCm387140,853,384 - 140,857,156 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7140,853,394 - 140,857,577 (-)EnsemblGRCm38mm10GRCm38
MGSCv377148,039,283 - 148,042,282 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367140,704,731 - 140,707,587 (-)NCBIMGSCv36mm8
Celera7140,645,668 - 140,648,667 (-)NCBICelera
Cytogenetic Map7F4NCBI
cM Map786.05NCBI
Bet1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81205,361,041 - 205,365,036 (-)NCBIGRCr8
mRatBN7.21195,931,407 - 195,935,072 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1195,931,411 - 195,935,040 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1204,283,870 - 204,287,536 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01211,410,778 - 211,414,444 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01204,084,630 - 204,088,296 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01213,602,836 - 213,606,507 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,602,850 - 213,605,643 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01220,528,161 - 220,532,051 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41201,010,734 - 201,013,527 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11201,160,725 - 201,163,519 (-)NCBI
Celera1193,575,359 - 193,578,152 (-)NCBICelera
Cytogenetic Map1q41NCBI
Bet1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547611,833,595 - 11,836,411 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547611,833,595 - 11,836,411 (+)NCBIChiLan1.0ChiLan1.0
BET1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v292,570,279 - 2,576,103 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1111,725,749 - 1,731,573 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011197,901 - 203,307 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111242,985 - 248,290 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11242,985 - 248,762 (-)Ensemblpanpan1.1panPan2
Bet1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494752,006 - 57,356 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493688852,019 - 56,776 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493688842,646 - 56,589 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BET1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl226,478 - 30,574 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1226,475 - 31,960 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22162,193,909 - 162,198,043 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BET1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1114,423 - 18,444 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl115,562 - 17,569 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603897,028,098 - 97,032,613 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bet1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476622,240,972 - 22,245,040 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476622,240,960 - 22,245,040 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BET1L
37 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000010382   ⟹   ENSCAFP00000009625
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1825,360,636 - 25,361,299 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845049756   ⟹   ENSCAFP00845039021
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1825,885,100 - 25,888,467 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845049769   ⟹   ENSCAFP00845039031
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1825,887,212 - 25,888,467 (-)Ensembl
RefSeq Acc Id: XM_038423963   ⟹   XP_038279891
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01825,885,095 - 25,888,488 (-)NCBI
RefSeq Acc Id: XM_038500321   ⟹   XP_038356249
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11825,453,118 - 25,456,508 (-)NCBI
RefSeq Acc Id: XM_038562884   ⟹   XP_038418812
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01825,710,708 - 25,714,130 (-)NCBI
RefSeq Acc Id: XM_038627004   ⟹   XP_038482932
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01825,097,901 - 25,101,285 (-)NCBI
RefSeq Acc Id: XM_540512   ⟹   XP_540512
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11825,358,517 - 25,361,944 (-)NCBI
Dog10K_Boxer_Tasha1825,008,498 - 25,011,892 (-)NCBI
Sequence:
RefSeq Acc Id: XP_540512   ⟸   XM_540512
- UniProtKB: A0A8C0K3Y9 (UniProtKB/TrEMBL),   A0A8C0ML66 (UniProtKB/TrEMBL),   A0A8I3PVR4 (UniProtKB/TrEMBL),   A0A8C0ML74 (UniProtKB/TrEMBL),   A0A8I3Q307 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000009625   ⟸   ENSCAFT00000010382
RefSeq Acc Id: XP_038356249   ⟸   XM_038500321
RefSeq Acc Id: XP_038482932   ⟸   XM_038627004
RefSeq Acc Id: XP_038279891   ⟸   XM_038423963
- UniProtKB: A0A8C0K3Y9 (UniProtKB/TrEMBL),   A0A8C0ML66 (UniProtKB/TrEMBL),   A0A8I3PVR4 (UniProtKB/TrEMBL),   A0A8C0ML74 (UniProtKB/TrEMBL),   A0A8I3Q307 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038418812   ⟸   XM_038562884
- UniProtKB: A0A8C0K3Y9 (UniProtKB/TrEMBL),   A0A8C0ML66 (UniProtKB/TrEMBL),   A0A8C0ML74 (UniProtKB/TrEMBL),   A0A8I3PVR4 (UniProtKB/TrEMBL),   A0A8I3Q307 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845039021   ⟸   ENSCAFT00845049756
RefSeq Acc Id: ENSCAFP00845039031   ⟸   ENSCAFT00845049769
Promoters
RGD ID:13686455
Promoter ID:EPDNEW_C4524
Type:initiation region
Name:BET1L_1
Description:Bet1 golgi vesicular membrane trafficking protein like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11825,361,934 - 25,361,994EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000006433 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030008338 UniProtKB/TrEMBL
  ENSCAFG00040022267 UniProtKB/TrEMBL
  ENSCAFG00845028203 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000010382.5 UniProtKB/TrEMBL
  ENSCAFT00000109264.1 UniProtKB/TrEMBL
  ENSCAFT00030015401.1 UniProtKB/TrEMBL
  ENSCAFT00030015432.1 UniProtKB/TrEMBL
  ENSCAFT00030015476.1 UniProtKB/TrEMBL
  ENSCAFT00040041341.1 UniProtKB/TrEMBL
  ENSCAFT00040041401.1 UniProtKB/TrEMBL
  ENSCAFT00040041417.1 UniProtKB/TrEMBL
  ENSCAFT00845049756 ENTREZGENE
  ENSCAFT00845049756.1 UniProtKB/TrEMBL
  ENSCAFT00845049769.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
InterPro BET1_SNARE UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/TrEMBL
KEGG Report cfa:483393 UniProtKB/TrEMBL
NCBI Gene BET1L ENTREZGENE
PANTHER BET1-LIKE PROTEIN UniProtKB/TrEMBL
  PTHR12791 UniProtKB/TrEMBL
PROSITE T_SNARE UniProtKB/TrEMBL
Superfamily-SCOP SNARE fusion complex UniProtKB/TrEMBL
UniProt A0A8C0K3Y9 ENTREZGENE
  A0A8C0ML66 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0ML74 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0MPN3_CANLF UniProtKB/TrEMBL
  A0A8C0TEM6_CANLF UniProtKB/TrEMBL
  A0A8I3PVR4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q307 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38438 ENTREZGENE