MCF2 (MCF.2 cell line derived transforming sequence) - Rat Genome Database

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Gene: MCF2 (MCF.2 cell line derived transforming sequence) Canis lupus familiaris
Analyze
Symbol: MCF2
Name: MCF.2 cell line derived transforming sequence
RGD ID: 12071198
Description: ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (inferred); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); dendrite development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Failure to Thrive (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proto-oncogene DBL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X109,543,609 - 109,627,265 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX109,545,245 - 109,627,260 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX95,370,950 - 95,454,589 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X111,530,138 - 111,601,036 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX111,530,151 - 111,601,032 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X108,664,168 - 108,747,786 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X110,848,683 - 110,932,293 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X110,528,154 - 110,611,768 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MCF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X109,543,609 - 109,627,265 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX109,545,245 - 109,627,260 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX95,370,950 - 95,454,589 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X111,530,138 - 111,601,036 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX111,530,151 - 111,601,032 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X108,664,168 - 108,747,786 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X110,848,683 - 110,932,293 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X110,528,154 - 110,611,768 (-)NCBIUU_Cfam_GSD_1.0
MCF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X139,581,770 - 139,708,167 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX139,581,770 - 139,708,216 (-)EnsemblGRCh38hg38GRCh38
GRCh37X138,663,929 - 138,790,326 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X138,491,596 - 138,618,047 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X138,389,449 - 138,450,372NCBI
CeleraX139,031,369 - 139,157,817 (-)NCBICelera
Cytogenetic MapXq27.1NCBI
HuRefX127,931,315 - 128,057,565 (-)NCBIHuRef
CHM1_1X138,574,821 - 138,701,280 (-)NCBICHM1_1
T2T-CHM13v2.0X137,890,836 - 138,020,159 (-)NCBIT2T-CHM13v2.0
Mcf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X59,101,316 - 59,224,546 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX59,101,316 - 59,224,449 (-)EnsemblGRCm39 Ensembl
GRCm38X60,055,956 - 60,179,184 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX60,055,956 - 60,179,089 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X57,309,133 - 57,400,820 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X56,402,743 - 56,494,427 (-)NCBIMGSCv36mm8
CeleraX46,495,004 - 46,586,548 (-)NCBICelera
Cytogenetic MapXA6NCBI
cM MapX33.5NCBI
Mcf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X143,444,510 - 143,550,839 (-)NCBIGRCr8
mRatBN7.2X138,414,077 - 138,514,828 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX138,409,256 - 138,514,446 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X143,159,071 - 143,292,467 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX143,154,209 - 143,274,180 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X143,188,541 - 143,236,007 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X145,597,430 - 145,693,790 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX134,485,013 - 134,591,931 (-)NCBICelera
Cytogenetic MapXq36NCBI
Mcf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554895,665,530 - 5,709,891 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554895,613,310 - 5,715,688 (+)NCBIChiLan1.0ChiLan1.0
MCF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X139,031,267 - 139,143,551 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X139,034,869 - 139,147,149 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X128,737,271 - 128,848,384 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X138,985,456 - 139,047,015 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX138,984,632 - 139,096,066 (-)Ensemblpanpan1.1panPan2
Mcf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X107,580,518 - 107,707,380 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365137,922,700 - 8,034,793 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365137,950,082 - 8,035,421 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MCF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX114,258,074 - 114,356,156 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X114,258,082 - 114,356,106 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X130,456,205 - 130,575,812 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MCF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X114,670,397 - 114,795,400 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX114,670,454 - 114,776,957 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606552,394,633 - 52,527,358 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mcf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248087,009,996 - 7,116,804 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248087,010,020 - 7,116,752 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MCF2
335 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 2
Low 9 10 3
Below cutoff 5 5 13 6 6 6 6 6 5 10 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022415982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038450994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038450995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038450996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038450997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038450998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038450999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038451000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038464876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038524467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038524468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038524469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038524470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038524471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038588439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038588440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038588441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038588442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038588443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038652959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038652960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038652961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038652962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038652963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000030173   ⟹   ENSCAFP00000028038
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX109,545,245 - 109,627,260 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000045815   ⟹   ENSCAFP00000043201
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX109,545,245 - 109,614,264 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000068856   ⟹   ENSCAFP00000049424
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX109,545,245 - 109,615,208 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000069532   ⟹   ENSCAFP00000046909
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX109,552,672 - 109,615,208 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000075605   ⟹   ENSCAFP00000057074
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX109,545,245 - 109,615,208 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000087873   ⟹   ENSCAFP00000046423
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX109,550,599 - 109,615,208 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000089021   ⟹   ENSCAFP00000049722
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX109,550,935 - 109,615,208 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000090163   ⟹   ENSCAFP00000049911
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX109,545,245 - 109,615,208 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845052833   ⟹   ENSCAFP00845041478
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX111,530,151 - 111,601,032 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845052909   ⟹   ENSCAFP00845041544
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX111,530,151 - 111,601,032 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845052970   ⟹   ENSCAFP00845041589
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX111,530,151 - 111,601,032 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845053062   ⟹   ENSCAFP00845041663
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX111,535,003 - 111,594,914 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845053080   ⟹   ENSCAFP00845041677
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX111,536,007 - 111,601,032 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845053121   ⟹   ENSCAFP00845041714
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX111,539,187 - 111,601,032 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845053130   ⟹   ENSCAFP00845041721
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX111,540,219 - 111,601,032 (-)Ensembl
RefSeq Acc Id: XM_022415982   ⟹   XP_022271690
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X109,543,609 - 109,627,265 (-)NCBI
Dog10K_Boxer_TashaX95,370,950 - 95,454,589 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022415983   ⟹   XP_022271691
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X109,543,609 - 109,627,264 (-)NCBI
Dog10K_Boxer_TashaX95,370,950 - 95,454,589 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022415984   ⟹   XP_022271692
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X109,543,609 - 109,614,668 (-)NCBI
Dog10K_Boxer_TashaX95,370,950 - 95,441,986 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022415985   ⟹   XP_022271693
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X109,552,930 - 109,627,265 (-)NCBI
Dog10K_Boxer_TashaX95,380,256 - 95,454,589 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038450994   ⟹   XP_038306922
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X111,530,138 - 111,601,036 (-)NCBI
RefSeq Acc Id: XM_038450995   ⟹   XP_038306923
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X111,536,007 - 111,601,036 (-)NCBI
RefSeq Acc Id: XM_038450996   ⟹   XP_038306924
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X111,530,138 - 111,601,036 (-)NCBI
RefSeq Acc Id: XM_038450997   ⟹   XP_038306925
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X111,530,138 - 111,601,036 (-)NCBI
RefSeq Acc Id: XM_038450998   ⟹   XP_038306926
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X111,536,007 - 111,601,036 (-)NCBI
RefSeq Acc Id: XM_038450999   ⟹   XP_038306927
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X111,530,138 - 111,601,036 (-)NCBI
RefSeq Acc Id: XM_038451000   ⟹   XP_038306928
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X111,539,444 - 111,601,036 (-)NCBI
RefSeq Acc Id: XM_038464876   ⟹   XP_038320804
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_TashaX95,376,819 - 95,454,589 (-)NCBI
RefSeq Acc Id: XM_038524467   ⟹   XP_038380395
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X108,664,168 - 108,747,786 (-)NCBI
RefSeq Acc Id: XM_038524468   ⟹   XP_038380396
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X108,670,037 - 108,747,786 (-)NCBI
RefSeq Acc Id: XM_038524469   ⟹   XP_038380397
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X108,664,168 - 108,747,786 (-)NCBI
RefSeq Acc Id: XM_038524470   ⟹   XP_038380398
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X108,664,168 - 108,735,174 (-)NCBI
RefSeq Acc Id: XM_038524471   ⟹   XP_038380399
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X108,673,474 - 108,747,786 (-)NCBI
RefSeq Acc Id: XM_038588439   ⟹   XP_038444367
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X110,528,154 - 110,611,768 (-)NCBI
RefSeq Acc Id: XM_038588440   ⟹   XP_038444368
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X110,534,023 - 110,611,768 (-)NCBI
RefSeq Acc Id: XM_038588441   ⟹   XP_038444369
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X110,528,154 - 110,611,768 (-)NCBI
RefSeq Acc Id: XM_038588442   ⟹   XP_038444370
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X110,528,154 - 110,599,151 (-)NCBI
RefSeq Acc Id: XM_038588443   ⟹   XP_038444371
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X110,537,460 - 110,611,768 (-)NCBI
RefSeq Acc Id: XM_038652959   ⟹   XP_038508887
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X110,848,683 - 110,932,293 (-)NCBI
RefSeq Acc Id: XM_038652960   ⟹   XP_038508888
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X110,854,552 - 110,932,293 (-)NCBI
RefSeq Acc Id: XM_038652961   ⟹   XP_038508889
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X110,848,683 - 110,932,293 (-)NCBI
RefSeq Acc Id: XM_038652962   ⟹   XP_038508890
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X110,848,683 - 110,919,703 (-)NCBI
RefSeq Acc Id: XM_038652963   ⟹   XP_038508891
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X110,857,989 - 110,932,293 (-)NCBI
Protein Sequences
Protein RefSeqs XP_022271690 (Get FASTA)   NCBI Sequence Viewer  
  XP_022271691 (Get FASTA)   NCBI Sequence Viewer  
  XP_022271692 (Get FASTA)   NCBI Sequence Viewer  
  XP_022271693 (Get FASTA)   NCBI Sequence Viewer  
  XP_038306922 (Get FASTA)   NCBI Sequence Viewer  
  XP_038306923 (Get FASTA)   NCBI Sequence Viewer  
  XP_038306924 (Get FASTA)   NCBI Sequence Viewer  
  XP_038306925 (Get FASTA)   NCBI Sequence Viewer  
  XP_038306926 (Get FASTA)   NCBI Sequence Viewer  
  XP_038306927 (Get FASTA)   NCBI Sequence Viewer  
  XP_038306928 (Get FASTA)   NCBI Sequence Viewer  
  XP_038320804 (Get FASTA)   NCBI Sequence Viewer  
  XP_038380395 (Get FASTA)   NCBI Sequence Viewer  
  XP_038380396 (Get FASTA)   NCBI Sequence Viewer  
  XP_038380397 (Get FASTA)   NCBI Sequence Viewer  
  XP_038380398 (Get FASTA)   NCBI Sequence Viewer  
  XP_038380399 (Get FASTA)   NCBI Sequence Viewer  
  XP_038444367 (Get FASTA)   NCBI Sequence Viewer  
  XP_038444368 (Get FASTA)   NCBI Sequence Viewer  
  XP_038444369 (Get FASTA)   NCBI Sequence Viewer  
  XP_038444370 (Get FASTA)   NCBI Sequence Viewer  
  XP_038444371 (Get FASTA)   NCBI Sequence Viewer  
  XP_038508887 (Get FASTA)   NCBI Sequence Viewer  
  XP_038508888 (Get FASTA)   NCBI Sequence Viewer  
  XP_038508889 (Get FASTA)   NCBI Sequence Viewer  
  XP_038508890 (Get FASTA)   NCBI Sequence Viewer  
  XP_038508891 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000028038.5
  ENSCAFP00000043201.3
  ENSCAFP00000046423.2
  ENSCAFP00000046909.2
  ENSCAFP00000049424.2
  ENSCAFP00000049722.2
  ENSCAFP00000049911.2
  ENSCAFP00000057074.2
  ENSCAFP00040017433.1
  ENSCAFP00040017598.1
  ENSCAFP00040017754.1
  ENSCAFP00040017955.1
  ENSCAFP00040018083.1
  ENSCAFP00040018338.1
  ENSCAFP00040018390.1
  ENSCAFP00040018437.1
  ENSCAFP00845041478
  ENSCAFP00845041478.1
  ENSCAFP00845041544
  ENSCAFP00845041544.1
  ENSCAFP00845041589.1
  ENSCAFP00845041663
  ENSCAFP00845041663.1
  ENSCAFP00845041677
  ENSCAFP00845041677.1
  ENSCAFP00845041714.1
  ENSCAFP00845041721
  ENSCAFP00845041721.1
Reference Protein Sequences
RefSeq Acc Id: XP_022271690   ⟸   XM_022415982
- Peptide Label: isoform X20
- UniProtKB: A0A8P0T265 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022271691   ⟸   XM_022415983
- Peptide Label: isoform X22
- UniProtKB: A0A8P0NZS3 (UniProtKB/TrEMBL),   A0A8P0T265 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022271692   ⟸   XM_022415984
- Peptide Label: isoform X1
- UniProtKB: A0A8C0YV82 (UniProtKB/TrEMBL),   A0A8C0SA04 (UniProtKB/TrEMBL),   A0A8I3Q822 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022271693   ⟸   XM_022415985
- Peptide Label: isoform X23
- UniProtKB: A0A8C0SAQ4 (UniProtKB/TrEMBL),   A0A8P0NX09 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000049424   ⟸   ENSCAFT00000068856
RefSeq Acc Id: ENSCAFP00000046909   ⟸   ENSCAFT00000069532
RefSeq Acc Id: ENSCAFP00000043201   ⟸   ENSCAFT00000045815
RefSeq Acc Id: ENSCAFP00000046423   ⟸   ENSCAFT00000087873
RefSeq Acc Id: ENSCAFP00000028038   ⟸   ENSCAFT00000030173
RefSeq Acc Id: ENSCAFP00000049911   ⟸   ENSCAFT00000090163
RefSeq Acc Id: ENSCAFP00000049722   ⟸   ENSCAFT00000089021
RefSeq Acc Id: ENSCAFP00000057074   ⟸   ENSCAFT00000075605
RefSeq Acc Id: XP_038380397   ⟸   XM_038524469
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038380395   ⟸   XM_038524467
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038380398   ⟸   XM_038524470
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038380396   ⟸   XM_038524468
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038380399   ⟸   XM_038524471
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038508889   ⟸   XM_038652961
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038508887   ⟸   XM_038652959
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038508890   ⟸   XM_038652962
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038508888   ⟸   XM_038652960
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038508891   ⟸   XM_038652963
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038306927   ⟸   XM_038450999
- Peptide Label: isoform X6
- UniProtKB: A0A8C0S8A6 (UniProtKB/TrEMBL),   A0A8I3Q280 (UniProtKB/TrEMBL),   A0A8I3Q4V8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038306925   ⟸   XM_038450997
- Peptide Label: isoform X4
- UniProtKB: A0A8I3Q4V8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038306924   ⟸   XM_038450996
- Peptide Label: isoform X3
- UniProtKB: A0A8I3Q8N1 (UniProtKB/TrEMBL),   A0A8P0SWK3 (UniProtKB/TrEMBL),   A0A8C0SA04 (UniProtKB/TrEMBL),   A0A8I3Q822 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038306922   ⟸   XM_038450994
- Peptide Label: isoform X1
- UniProtKB: A0A8C0YV82 (UniProtKB/TrEMBL),   A0A8C0SA04 (UniProtKB/TrEMBL),   A0A8I3Q822 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038306923   ⟸   XM_038450995
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SA04 (UniProtKB/TrEMBL),   A0A8I3Q822 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038306926   ⟸   XM_038450998
- Peptide Label: isoform X5
- UniProtKB: A0A8C0SA04 (UniProtKB/TrEMBL),   A0A8I3Q822 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038306928   ⟸   XM_038451000
- Peptide Label: isoform X7
- UniProtKB: A0A8C0SA93 (UniProtKB/TrEMBL),   A0A8I3QLI5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038320804   ⟸   XM_038464876
- Peptide Label: isoform X21
- UniProtKB: A0A8P0NZP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038444369   ⟸   XM_038588441
- Peptide Label: isoform X18
- UniProtKB: A0A8P0NZS3 (UniProtKB/TrEMBL),   A0A8P0T265 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038444367   ⟸   XM_038588439
- Peptide Label: isoform X16
- UniProtKB: A0A8P0T265 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038444370   ⟸   XM_038588442
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SA04 (UniProtKB/TrEMBL),   A0A8C0YV82 (UniProtKB/TrEMBL),   A0A8I3Q822 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038444368   ⟸   XM_038588440
- Peptide Label: isoform X17
- UniProtKB: A0A8P0NZP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038444371   ⟸   XM_038588443
- Peptide Label: isoform X19
- UniProtKB: A0A8C0SAQ4 (UniProtKB/TrEMBL),   A0A8P0NX09 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845041714   ⟸   ENSCAFT00845053121
RefSeq Acc Id: ENSCAFP00845041721   ⟸   ENSCAFT00845053130
RefSeq Acc Id: ENSCAFP00845041589   ⟸   ENSCAFT00845052970
RefSeq Acc Id: ENSCAFP00845041478   ⟸   ENSCAFT00845052833
RefSeq Acc Id: ENSCAFP00845041677   ⟸   ENSCAFT00845053080
RefSeq Acc Id: ENSCAFP00845041663   ⟸   ENSCAFT00845053062
RefSeq Acc Id: ENSCAFP00845041544   ⟸   ENSCAFT00845052909
Protein Domains
CRAL-TRIO   DH   PH   SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019001 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040010319 UniProtKB/TrEMBL
  ENSCAFG00845029804 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000030173.5 UniProtKB/TrEMBL
  ENSCAFT00000045815.4 UniProtKB/TrEMBL
  ENSCAFT00000068856.2 UniProtKB/TrEMBL
  ENSCAFT00000069532.2 UniProtKB/TrEMBL
  ENSCAFT00000075605.2 UniProtKB/TrEMBL
  ENSCAFT00000087873.2 UniProtKB/TrEMBL
  ENSCAFT00000089021.2 UniProtKB/TrEMBL
  ENSCAFT00000090163.2 UniProtKB/TrEMBL
  ENSCAFT00040020095.1 UniProtKB/TrEMBL
  ENSCAFT00040020282.1 UniProtKB/TrEMBL
  ENSCAFT00040020461.1 UniProtKB/TrEMBL
  ENSCAFT00040020688.1 UniProtKB/TrEMBL
  ENSCAFT00040020832.1 UniProtKB/TrEMBL
  ENSCAFT00040021121.1 UniProtKB/TrEMBL
  ENSCAFT00040021178.1 UniProtKB/TrEMBL
  ENSCAFT00040021232.1 UniProtKB/TrEMBL
  ENSCAFT00845052833 ENTREZGENE
  ENSCAFT00845052833.1 UniProtKB/TrEMBL
  ENSCAFT00845052909 ENTREZGENE
  ENSCAFT00845052909.1 UniProtKB/TrEMBL
  ENSCAFT00845052970.1 UniProtKB/TrEMBL
  ENSCAFT00845053062 ENTREZGENE
  ENSCAFT00845053062.1 UniProtKB/TrEMBL
  ENSCAFT00845053080 ENTREZGENE
  ENSCAFT00845053080.1 UniProtKB/TrEMBL
  ENSCAFT00845053121.1 UniProtKB/TrEMBL
  ENSCAFT00845053130 ENTREZGENE
  ENSCAFT00845053130.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.60 UniProtKB/TrEMBL
  1.20.900.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro CRAL-TRIO_dom UniProtKB/TrEMBL
  CRAL-TRIO_dom_sf UniProtKB/TrEMBL
  DBL_dom_sf UniProtKB/TrEMBL
  DBS_SH3 UniProtKB/TrEMBL
  DH-domain UniProtKB/TrEMBL
  GDS_CDC24_CS UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  Spectrin/alpha-actinin UniProtKB/TrEMBL
NCBI Gene MCF2 ENTREZGENE
PANTHER PROTO-ONCOGENE DBL UniProtKB/TrEMBL
  RHO GUANINE EXCHANGE FACTOR-RELATED UniProtKB/TrEMBL
Pfam CRAL_TRIO_2 UniProtKB/TrEMBL
  PF00169 UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
PROSITE CRAL_TRIO UniProtKB/TrEMBL
  DH_1 UniProtKB/TrEMBL
  DH_2 UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART RhoGEF UniProtKB/TrEMBL
  SEC14 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
  SPEC UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  Spectrin repeat UniProtKB/TrEMBL
  SSF48065 UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
  SSF52087 UniProtKB/TrEMBL
UniProt A0A8C0S8A6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0S9V9_CANLF UniProtKB/TrEMBL
  A0A8C0SA04 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SA93 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SAQ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SBF5_CANLF UniProtKB/TrEMBL
  A0A8C0YV82 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0YVL9_CANLF UniProtKB/TrEMBL
  A0A8I3Q280 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q4Q4_CANLF UniProtKB/TrEMBL
  A0A8I3Q4V8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q556_CANLF UniProtKB/TrEMBL
  A0A8I3Q822 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q8N1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3QLI5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NX09 ENTREZGENE
  A0A8P0NZP3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NZS3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0P6C9_CANLF UniProtKB/TrEMBL
  A0A8P0SWK3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SZC7_CANLF UniProtKB/TrEMBL
  A0A8P0T265 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8P0NK76 UniProtKB/TrEMBL
  A0A8P0NX09 UniProtKB/TrEMBL
VGNC ID VGNC:49923 ENTREZGENE