ATF6B (activating transcription factor 6 beta) - Rat Genome Database

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Gene: ATF6B (activating transcription factor 6 beta) Canis lupus familiaris
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Symbol: ATF6B
Name: activating transcription factor 6 beta
RGD ID: 12070965
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of ATF6-mediated unfolded protein response (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); nucleus (ortholog); protein-DNA complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cAMP responsive element binding protein-like 1; CREBL1; cyclic AMP-dependent transcription factor ATF-6 beta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,515,186 - 1,525,165 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,515,503 - 1,525,110 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,649,820 - 1,659,539 (-)NCBI
ROS_Cfam_1.0121,648,775 - 1,664,022 (-)NCBI
UMICH_Zoey_3.1121,517,328 - 1,527,049 (-)NCBI
UNSW_CanFamBas_1.0121,582,585 - 1,592,516 (-)NCBI
UU_Cfam_GSD_1.0121,649,158 - 1,658,950 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
ATF6B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,515,186 - 1,525,165 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,515,503 - 1,525,110 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,649,820 - 1,659,539 (-)NCBI
ROS_Cfam_1.0121,648,775 - 1,664,022 (-)NCBI
UMICH_Zoey_3.1121,517,328 - 1,527,049 (-)NCBI
UNSW_CanFamBas_1.0121,582,585 - 1,592,516 (-)NCBI
UU_Cfam_GSD_1.0121,649,158 - 1,658,950 (-)NCBI
ATF6B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl632,115,264 - 32,128,253 (-)EnsemblGRCh38hg38GRCh38
GRCh38632,115,264 - 32,128,246 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37632,083,041 - 32,096,023 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36632,191,016 - 32,203,995 (-)NCBINCBI36hg18NCBI36
Build 34632,191,024 - 32,203,995NCBI
Celera633,650,086 - 33,663,069 (-)NCBI
Cytogenetic Map6p21.32NCBI
HuRef631,837,168 - 31,850,138 (-)NCBIHuRef
CHM1_1632,085,255 - 32,098,227 (-)NCBICHM1_1
Atf6b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,866,120 - 34,874,048 (+)NCBIGRCm39mm39
GRCm39 Ensembl1734,866,120 - 34,874,048 (+)Ensembl
GRCm381734,647,146 - 34,655,074 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,647,146 - 34,655,074 (+)EnsemblGRCm38mm10GRCm38
MGSCv371734,784,125 - 34,792,017 (+)NCBIGRCm37mm9NCBIm37
MGSCv361734,255,202 - 34,263,128 (+)NCBImm8
Celera1737,742,351 - 37,750,243 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.22NCBI
Atf6b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2204,090,921 - 4,098,920 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl204,090,921 - 4,098,894 (-)Ensembl
Rnor_6.0204,414,283 - 4,422,283 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,414,276 - 4,422,283 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0206,493,639 - 6,501,639 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4204,192,185 - 4,200,036 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1204,192,411 - 4,200,335 (-)NCBI
Celera203,931,428 - 3,939,279 (+)NCBICelera
Cytogenetic Map20p12NCBI
Atf6b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437582,431 - 591,810 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955437582,083 - 592,026 (-)NCBIChiLan1.0ChiLan1.0
ATF6B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1632,643,124 - 32,655,617 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,643,124 - 32,655,617 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0631,762,161 - 31,775,136 (-)NCBIMhudiblu_PPA_v0panPan3
Atf6b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494636,073,980 - 36,085,314 (-)NCBI
SpeTri2.0NW_0049367271,476,061 - 1,487,353 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATF6B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl724,153,572 - 24,171,840 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1724,153,551 - 24,171,743 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,974,356 - 27,992,535 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATF6B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11739,901,226 - 39,913,702 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1739,901,226 - 39,914,142 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604432,017,693 - 32,030,453 (-)NCBIVero_WHO_p1.0
Atf6b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475424,185,203 - 24,194,351 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 1 22 6 6 6 6 12 1 10 6
Low 4 6 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022425781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038491389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038491390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038491391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038553604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038553605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038553606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038617480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038617481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038617482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038678663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038678664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038678670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038683064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038683065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038683066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038683067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000001189   ⟹   ENSCAFP00000001088
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl121,515,503 - 1,525,110 (-)Ensembl
RefSeq Acc Id: XM_038491389   ⟹   XP_038347317
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1121,517,328 - 1,527,031 (-)NCBI
RefSeq Acc Id: XM_038491390   ⟹   XP_038347318
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1121,517,328 - 1,527,049 (-)NCBI
RefSeq Acc Id: XM_038491391   ⟹   XP_038347319
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1121,517,899 - 1,527,032 (-)NCBI
RefSeq Acc Id: XM_038553604   ⟹   XP_038409532
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0121,649,158 - 1,658,932 (-)NCBI
RefSeq Acc Id: XM_038553605   ⟹   XP_038409533
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0121,649,158 - 1,658,950 (-)NCBI
RefSeq Acc Id: XM_038553606   ⟹   XP_038409534
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0121,649,734 - 1,658,933 (-)NCBI
RefSeq Acc Id: XM_038617480   ⟹   XP_038473408
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0121,582,585 - 1,592,498 (-)NCBI
RefSeq Acc Id: XM_038617481   ⟹   XP_038473409
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0121,582,585 - 1,592,516 (-)NCBI
RefSeq Acc Id: XM_038617482   ⟹   XP_038473410
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0121,583,152 - 1,592,499 (-)NCBI
RefSeq Acc Id: XM_038678663   ⟹   XP_038534591
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha121,649,820 - 1,659,521 (-)NCBI
RefSeq Acc Id: XM_038678664   ⟹   XP_038534592
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha121,649,820 - 1,659,539 (-)NCBI
RefSeq Acc Id: XM_038678670   ⟹   XP_038534598
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha121,650,395 - 1,659,522 (-)NCBI
RefSeq Acc Id: XM_038683064   ⟹   XP_038538992
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0121,654,223 - 1,664,004 (-)NCBI
RefSeq Acc Id: XM_038683065   ⟹   XP_038538993
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0121,654,223 - 1,664,022 (-)NCBI
RefSeq Acc Id: XM_038683066   ⟹   XP_038538994
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0121,654,797 - 1,664,005 (-)NCBI
RefSeq Acc Id: XM_038683067   ⟹   XP_038538995
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0121,648,775 - 1,664,006 (-)NCBI
Reference Sequences
RefSeq Acc Id: ENSCAFP00000001088   ⟸   ENSCAFT00000001189
RefSeq Acc Id: XP_038347318   ⟸   XM_038491390
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038347317   ⟸   XM_038491389
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038347319   ⟸   XM_038491391
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038473409   ⟸   XM_038617481
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038473408   ⟸   XM_038617480
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038473410   ⟸   XM_038617482
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038538995   ⟸   XM_038683067
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038538993   ⟸   XM_038683065
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038538992   ⟸   XM_038683064
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038538994   ⟸   XM_038683066
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038534592   ⟸   XM_038678664
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038534591   ⟸   XM_038678663
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038534598   ⟸   XM_038678670
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038409533   ⟸   XM_038553605
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038409532   ⟸   XM_038553604
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038409534   ⟸   XM_038553606
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000000761 Ensembl
NCBI Gene ATF6B ENTREZGENE
VGNC ID VGNC:52104 ENTREZGENE