IER2 (immediate early response 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: IER2 (immediate early response 2) Canis lupus familiaris
Analyze
Symbol: IER2
Name: immediate early response 2
RGD ID: 12070396
Description: INVOLVED IN neuron differentiation (ortholog); response to fibroblast growth factor (ortholog); ASSOCIATED WITH alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); childhood acute myeloid leukemia (ortholog); FOUND IN cytoplasm (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: immediate early response gene 2 protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,071,243 - 49,074,184 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2049,072,234 - 49,072,902 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2048,944,380 - 48,946,236 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02049,588,863 - 49,590,720 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2049,588,864 - 49,590,663 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12048,800,441 - 48,802,297 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02049,226,806 - 49,228,663 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02049,469,195 - 49,471,051 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
IER2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,071,243 - 49,074,184 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2049,072,234 - 49,072,902 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2048,944,380 - 48,946,236 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02049,588,863 - 49,590,720 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2049,588,864 - 49,590,663 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12048,800,441 - 48,802,297 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02049,226,806 - 49,228,663 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02049,469,195 - 49,471,051 (-)NCBIUU_Cfam_GSD_1.0
IER2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381913,150,411 - 13,154,911 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1913,150,411 - 13,154,911 (+)EnsemblGRCh38hg38GRCh38
GRCh371913,261,225 - 13,265,725 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361913,122,282 - 13,126,722 (+)NCBINCBI36Build 36hg18NCBI36
Build 341913,122,281 - 13,126,716NCBI
Celera1913,151,680 - 13,156,120 (+)NCBICelera
Cytogenetic Map19p13.13NCBI
HuRef1912,833,675 - 12,838,116 (+)NCBIHuRef
CHM1_11913,262,236 - 13,266,676 (+)NCBICHM1_1
T2T-CHM13v2.01913,275,624 - 13,280,125 (+)NCBIT2T-CHM13v2.0
Ier2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,387,960 - 85,389,481 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl885,387,960 - 85,389,483 (-)EnsemblGRCm39 Ensembl
GRCm38884,661,331 - 84,662,852 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,661,331 - 84,662,854 (-)EnsemblGRCm38mm10GRCm38
MGSCv37887,185,230 - 87,186,751 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36887,549,656 - 87,552,953 (-)NCBIMGSCv36mm8
Celera888,961,236 - 88,962,757 (-)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.02NCBI
Ier2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81940,399,373 - 40,400,897 (+)NCBIGRCr8
mRatBN7.21923,494,551 - 23,496,075 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1923,494,184 - 23,499,211 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1930,317,473 - 30,318,997 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01930,971,850 - 30,973,374 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01933,194,540 - 33,196,064 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01925,774,146 - 25,775,670 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,774,143 - 25,775,659 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,750,509 - 36,752,033 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41925,159,276 - 25,160,800 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11925,164,101 - 25,165,622 (+)NCBI
Celera1923,048,157 - 23,049,681 (+)NCBICelera
Cytogenetic Map19q11NCBI
Ier2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541532,159,935 - 32,160,624 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541532,159,762 - 32,161,530 (+)NCBIChiLan1.0ChiLan1.0
IER2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22018,081,380 - 18,085,241 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11917,082,479 - 17,085,886 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01912,714,804 - 12,718,213 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11913,449,491 - 13,452,925 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1913,452,239 - 13,452,910 (+)Ensemblpanpan1.1panPan2
Ier2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,174,816 - 208,177,770 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366592,178,312 - 2,178,983 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366592,176,962 - 2,179,900 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IER2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl265,909,651 - 65,912,445 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1265,909,638 - 65,912,491 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2266,210,147 - 66,211,956 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IER2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1611,834,998 - 11,838,421 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl611,836,706 - 11,837,377 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660747,945,206 - 7,948,333 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ier2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624901684,966 - 685,652 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624901684,313 - 686,488 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in IER2
19 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 2 16 3 6 3 6 7 10 1
Low 3 5 6 3 3 4 5 1 5
Below cutoff 2 7

Sequence


RefSeq Acc Id: ENSCAFT00000035428   ⟹   ENSCAFP00000030688
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2049,072,234 - 49,072,902 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845053951   ⟹   ENSCAFP00845042393
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2049,588,864 - 49,590,663 (-)Ensembl
RefSeq Acc Id: XM_038428426   ⟹   XP_038284354
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02049,588,863 - 49,590,720 (-)NCBI
RefSeq Acc Id: XM_038504066   ⟹   XP_038359994
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12048,800,441 - 48,802,297 (-)NCBI
RefSeq Acc Id: XM_038567095   ⟹   XP_038423023
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02049,469,195 - 49,471,051 (-)NCBI
RefSeq Acc Id: XM_038631239   ⟹   XP_038487167
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02049,226,806 - 49,228,663 (-)NCBI
RefSeq Acc Id: XM_542033   ⟹   XP_542033
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12049,071,243 - 49,074,184 (-)NCBI
Dog10K_Boxer_Tasha2048,944,380 - 48,946,236 (-)NCBI
Sequence:
RefSeq Acc Id: XP_542033   ⟸   XM_542033
- UniProtKB: A0A8C0TH38 (UniProtKB/TrEMBL),   A0A8C0QW58 (UniProtKB/TrEMBL),   A0A8I3S7L7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000030688   ⟸   ENSCAFT00000035428
RefSeq Acc Id: XP_038359994   ⟸   XM_038504066
RefSeq Acc Id: XP_038487167   ⟸   XM_038631239
RefSeq Acc Id: XP_038284354   ⟸   XM_038428426
- UniProtKB: A0A8C0TH38 (UniProtKB/TrEMBL),   A0A8C0QW58 (UniProtKB/TrEMBL),   A0A8I3S7L7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423023   ⟸   XM_038567095
- UniProtKB: A0A8C0QW58 (UniProtKB/TrEMBL),   A0A8C0TH38 (UniProtKB/TrEMBL),   A0A8I3S7L7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845042393   ⟸   ENSCAFT00845053951


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000023155 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030017308 UniProtKB/TrEMBL
  ENSCAFG00040022914 UniProtKB/TrEMBL
  ENSCAFG00845030405 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000035428.4 UniProtKB/TrEMBL
  ENSCAFT00030031891.1 UniProtKB/TrEMBL
  ENSCAFT00040042616.1 UniProtKB/TrEMBL
  ENSCAFT00845053951 ENTREZGENE
  ENSCAFT00845053951.1 UniProtKB/TrEMBL
InterPro IER UniProtKB/TrEMBL
KEGG Report cfa:484917 UniProtKB/TrEMBL
NCBI Gene IER2 ENTREZGENE
PANTHER IMMEDIATE EARLY RESPONSE GENE 2 PROTEIN UniProtKB/TrEMBL
  PTHR15895 UniProtKB/TrEMBL
Pfam IER UniProtKB/TrEMBL
UniProt A0A8C0QW58 ENTREZGENE
  A0A8C0TH38 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3S7L7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:41868 ENTREZGENE