FANCD2OS (FANCD2 opposite strand)

Gene: FANCD2OS (FANCD2 opposite strand) Canis lupus familiaris

Analyze

Symbol:

FANCD2OS

Name:

FANCD2 opposite strand

RGD ID:

12069097

Description:

ASSOCIATED WITH Atrioventricular Septal Defect 2 (ortholog); Candidiasis, Familial, 9 (ortholog); Developmental Disabilities (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

C20H3orf24

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FANCD2OS (FANCD2 opposite strand)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Fancd2os (Fancd2 opposite strand)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Fancd2os (FANCD2 opposite strand)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Fancd2os (FANCD2 opposite strand)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FANCD2OS (FANCD2 opposite strand)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fancd2os (FANCD2 opposite strand)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FANCD2OS (FANCD2 opposite strand)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FANCD2OS (FANCD2 opposite strand)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fancd2os (FANCD2 opposite strand)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	8,236,303 - 8,239,662 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	8,236,445 - 8,239,193 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	8,269,947 - 8,273,305 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	8,265,589 - 8,268,944 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	8,267,939 - 8,268,475 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	7,987,583 - 7,990,938 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	8,333,191 - 8,336,549 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	8,306,507 - 8,309,862 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Atrioventricular Septal Defect 2 (ISO)

Candidiasis, Familial, 9 (ISO)

Developmental Disabilities (ISO)

familial erythrocytosis 2 (ISO)

Fanconi anemia (ISO)

Fanconi anemia complementation group A (ISO)

Fanconi anemia complementation group D2 (ISO)

genetic disease (ISO)

hepatoblastoma (ISO)

hereditary breast ovarian cancer syndrome (ISO)

Hereditary Neoplastic Syndromes (ISO)

Myoclonic Epilepsies (ISO)

Neurodevelopmental Disorders (ISO)

ovarian cancer (ISO)

severe congenital neutropenia 6 (ISO)

References

Genomics

Comparative Map Data

FANCD2OS
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	8,236,303 - 8,239,662 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	8,236,445 - 8,239,193 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	8,269,947 - 8,273,305 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	8,265,589 - 8,268,944 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	8,267,939 - 8,268,475 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	7,987,583 - 7,990,938 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	8,333,191 - 8,336,549 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	8,306,507 - 8,309,862 (+)	NCBI		UU_Cfam_GSD_1.0

FANCD2OS
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	10,081,320 - 10,108,457 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	10,081,317 - 10,108,255 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	10,123,004 - 10,149,939 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	10,098,004 - 10,124,915 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	10,058,671 - 10,085,581 (-)	NCBI		Celera
Cytogenetic Map	3	p25.3	NCBI
HuRef	3	10,059,378 - 10,086,324 (-)	NCBI		HuRef
CHM1_1	3	10,073,132 - 10,100,026 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	10,073,539 - 10,100,677 (-)	NCBI		T2T-CHM13v2.0

Fancd2os
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	113,573,722 - 113,577,735 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	113,573,722 - 113,577,676 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	113,596,761 - 113,600,715 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	113,596,761 - 113,600,715 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	113,546,756 - 113,550,709 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	113,562,539 - 113,566,430 (-)	NCBI		MGSCv36	mm8
Celera	6	115,423,553 - 115,427,506 (-)	NCBI		Celera
Cytogenetic Map	6	E3	NCBI
cM Map	6	52.8	NCBI

Fancd2os
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	148,296,478 - 148,303,037 (-)	NCBI		GRCr8
mRatBN7.2	4	146,740,863 - 146,747,547 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	146,740,863 - 146,747,569 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	152,128,029 - 152,131,529 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	147,908,896 - 147,912,397 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	146,536,994 - 146,540,474 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	145,549,248 - 145,556,054 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	145,552,270 - 145,555,748 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	208,845,651 - 208,852,339 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	149,500,797 - 149,504,275 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	135,298,508 - 135,301,988 (-)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

Fancd2os
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955561	1,538,960 - 1,542,130 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955561	1,538,960 - 1,542,130 (-)	NCBI	ChiLan1.0	ChiLan1.0

FANCD2OS
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	10,096,788 - 10,103,221 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	10,101,548 - 10,107,981 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	10,038,805 - 10,043,651 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	10,392,065 - 10,396,228 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	10,392,169 - 10,392,702 (-)	Ensembl	panpan1.1		panPan2

Fancd2os
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404942	15,747,927 - 15,769,121 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936602	3,160,508 - 3,161,044 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936602	3,160,505 - 3,161,374 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FANCD2OS
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	66,309,630 - 66,310,166 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	66,309,350 - 66,312,965 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	73,381,091 - 73,385,010 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FANCD2OS
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	46,144,575 - 46,150,638 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	46,144,859 - 46,145,392 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	120,401,818 - 120,402,459 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fancd2os
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	4,672,535 - 4,673,071 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624731	4,672,192 - 4,675,326 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in FANCD2OS
16 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium										8
Low							1					1
Below cutoff	5	4	20	4	6	4	5	4	12		10	5

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005632171	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005632172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022406371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038426959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038426960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038426961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038502751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038502752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038502753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038565670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038565671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038565672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038629805	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038629806	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038629807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000049489 ⟹ ENSCAFP00000041080

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	20	8,236,445 - 8,239,193 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845014453 ⟹ ENSCAFP00845011195

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	20	8,267,939 - 8,268,475 (+)	Ensembl

RefSeq Acc Id:

XM_005632171 ⟹ XP_005632228

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	20	8,236,303 - 8,239,662 (+)	NCBI
Dog10K_Boxer_Tasha	20	8,269,947 - 8,273,305 (+)	NCBI

Sequence:

show sequence

ACGTTCCAAGGAGGTGGGGGTGGGGAATCCAGCCCTGAAGACTGCCCACCCGGCGCCTCGAGCC
CCCACCCCCGCGGCAGCTCGGGCTCCCCCCGCGGTCCTGGGTCACAAAGGCGGTTGCCAGGCGC
CCGGTGGAGAAAAGATGCGGCCCGGAAACAGCGGCTGCCACTCTGGAGCGTCCGGCCCGCGGAG
TTCAGCAGGACTGTCAATGGCAGGATACCAGCTCTGGTCACCATGGACCCCACTGGACGAGAGC
TTCCAATGGCTGCGGCACACAACACCTACACCTTCTTCAAAGCATCCCTTTAGGGCTTCCCCCT
GTTTCCCACATACCCCTTCTGACCTTGAAGTGCAGCTGTGTTTTCAAGAGGTCACTCTAGTCTT
AGACAGCCCATTTCTGGAGCCTGGGATGAGTCCCAAGTTACCCTGCCACACATCAGAGCTCCGA
ACCATAAACAACAAGAAAGGGCTGGTCAGGAAGCCCCAGCCTGTCCGCCTCAGTGGAGTGGATT
CTGTGTTTGGCAGGGTCATCACAGCTCAGCCACCGAAATGGACTGGGACCTTCAGAGTTTCAGA
CAAATCAGCCTTTTGCAAAATCATCAGCCGGGAGAACCAGTGGCCCACTGGACTTAAGGAACCT
CAGATTCAGATGACAGTGACCATGTGTAAACAGATGCTGCGCTCTATCCTTTTACTGTATGCAA
CGTACAAGAAGTGCACCTTTGCCTTGCAACACTCCAAGTAAAGGATCCCCATGTGATTCCGTTT
CTTATAACACATCCTATGCTGTGTGCCTGAAGCTTACAGAAACCTGTTCATGTAAAGGAAACTG
ACATCACCTGAGCCATCTTGCTTTTCTGTCAAGCACTGACAATTCAGGAACCCCTTTCCTCCTT
TCCTCCCCAAAGGCCAGTGACAGAGCAAAGGAGAGCATTTCCATTGTAAAGATGAACAACATTT
AAAAGAGAGTCAAACTAGTGTTGACATGTACATGTGAGAAAGAACCATTAAACCGTATAAACCA
ATGAGCCTAGTGTGAACTCACTTAAACATCTAAGACCAAAATGAGTTGGGAAAATGGGTATCAA
GGAAGGAAATAATGGCTTTCCATGTACATGAGAATGAGGGGGTCAAAAATCTATAGACGACTCA
AGCATTAAAAAAAAAAAAAAAAAATCTCCCCCCATCAAATCAACAACAAAAATCTTAATCAA

hide sequence

RefSeq Acc Id:

XM_005632172 ⟹ XP_005632229

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	20	8,236,509 - 8,239,662 (+)	NCBI
Dog10K_Boxer_Tasha	20	8,270,149 - 8,273,305 (+)	NCBI

Sequence:

show sequence

CCCCGGCCCGGATGGTGGGACCGGGCCCGGGCTCCCACCGCCATCTCCGCCTCAGCCAGAGCCA
TCTGGCCCCCACCCCTGGCTAGGGACCCCCCCGGGGACAAGCCCCTTCTCCCCGCTGGGAGGGG
GAGCCTCCCCACTCCGGGCAACTCCAGCCTCTCTGGATCAGGATCAGGATCGCAGTTCACAATT
CAGGAGACCTCAGCGCATTTGGACCATTACTTCCCCTTTCCCAGGACTGTCAATGGCAGGATAC
CAGCTCTGGTCACCATGGACCCCACTGGACGAGAGCTTCCAATGGCTGCGGCACACAACACCTA
CACCTTCTTCAAAGCATCCCTTTAGGGCTTCCCCCTGTTTCCCACATACCCCTTCTGACCTTGA
AGTGCAGCTGTGTTTTCAAGAGGTCACTCTAGTCTTAGACAGCCCATTTCTGGAGCCTGGGATG
AGTCCCAAGTTACCCTGCCACACATCAGAGCTCCGAACCATAAACAACAAGAAAGGGCTGGTCA
GGAAGCCCCAGCCTGTCCGCCTCAGTGGAGTGGATTCTGTGTTTGGCAGGGTCATCACAGCTCA
GCCACCGAAATGGACTGGGACCTTCAGAGTTTCAGACAAATCAGCCTTTTGCAAAATCATCAGC
CGGGAGAACCAGTGGCCCACTGGACTTAAGGAACCTCAGATTCAGATGACAGTGACCATGTGTA
AACAGATGCTGCGCTCTATCCTTTTACTGTATGCAACGTACAAGAAGTGCACCTTTGCCTTGCA
ACACTCCAAGTAAAGGATCCCCATGTGATTCCGTTTCTTATAACACATCCTATGCTGTGTGCCT
GAAGCTTACAGAAACCTGTTCATGTAAAGGAAACTGACATCACCTGAGCCATCTTGCTTTTCTG
TCAAGCACTGACAATTCAGGAACCCCTTTCCTCCTTTCCTCCCCAAAGGCCAGTGACAGAGCAA
AGGAGAGCATTTCCATTGTAAAGATGAACAACATTTAAAAGAGAGTCAAACTAGTGTTGACATG
TACATGTGAGAAAGAACCATTAAACCGTATAAACCAATGAGCCTAGTGTGAACTCACTTAAACA
TCTAAGACCAAAATGAGTTGGGAAAATGGGTATCAAGGAAGGAAATAATGGCTTTCCATGTACA
TGAGAATGAGGGGGTCAAAAATCTATAGACGACTCAAGCATTAAAAAAAAAAAAAAAAAATCTC
CCCCCATCAAATCAACAACAAAAATCTTAATCAA

hide sequence

RefSeq Acc Id:

XM_022406371 ⟹ XP_022262079

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	20	8,236,745 - 8,239,662 (+)	NCBI
Dog10K_Boxer_Tasha	20	8,270,385 - 8,273,305 (+)	NCBI

Sequence:

show sequence

GTGGGGAAATCGAGGGACCTGGTTCCTTGGAACGGGAGGAGTTTATGAAGGGGAAGACTTTTTG
GCCAGAGTACAAGATGTTGAACAGATCTCCAAGGTTCAACCCCTCTTGGAATGGATGACAGTGA
TTTCCGGGTGGTGGGAATGGAGGGGACTGTCAATGGCAGGATACCAGCTCTGGTCACCATGGAC
CCCACTGGACGAGAGCTTCCAATGGCTGCGGCACACAACACCTACACCTTCTTCAAAGCATCCC
TTTAGGGCTTCCCCCTGTTTCCCACATACCCCTTCTGACCTTGAAGTGCAGCTGTGTTTTCAAG
AGGTCACTCTAGTCTTAGACAGCCCATTTCTGGAGCCTGGGATGAGTCCCAAGTTACCCTGCCA
CACATCAGAGCTCCGAACCATAAACAACAAGAAAGGGCTGGTCAGGAAGCCCCAGCCTGTCCGC
CTCAGTGGAGTGGATTCTGTGTTTGGCAGGGTCATCACAGCTCAGCCACCGAAATGGACTGGGA
CCTTCAGAGTTTCAGACAAATCAGCCTTTTGCAAAATCATCAGCCGGGAGAACCAGTGGCCCAC
TGGACTTAAGGAACCTCAGATTCAGATGACAGTGACCATGTGTAAACAGATGCTGCGCTCTATC
CTTTTACTGTATGCAACGTACAAGAAGTGCACCTTTGCCTTGCAACACTCCAAGTAAAGGATCC
CCATGTGATTCCGTTTCTTATAACACATCCTATGCTGTGTGCCTGAAGCTTACAGAAACCTGTT
CATGTAAAGGAAACTGACATCACCTGAGCCATCTTGCTTTTCTGTCAAGCACTGACAATTCAGG
AACCCCTTTCCTCCTTTCCTCCCCAAAGGCCAGTGACAGAGCAAAGGAGAGCATTTCCATTGTA
AAGATGAACAACATTTAAAAGAGAGTCAAACTAGTGTTGACATGTACATGTGAGAAAGAACCAT
TAAACCGTATAAACCAATGAGCCTAGTGTGAACTCACTTAAACATCTAAGACCAAAATGAGTTG
GGAAAATGGGTATCAAGGAAGGAAATAATGGCTTTCCATGTACATGAGAATGAGGGGGTCAAAA
ATCTATAGACGACTCAAGCATTAAAAAAAAAAAAAAAAAATCTCCCCCCATCAAATCAACAACA
AAAATCTTAATCAA

hide sequence

RefSeq Acc Id:

XM_038426959 ⟹ XP_038282887

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	20	8,265,589 - 8,268,944 (+)	NCBI

RefSeq Acc Id:

XM_038426960 ⟹ XP_038282888

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	20	8,266,027 - 8,268,944 (+)	NCBI

RefSeq Acc Id:

XM_038426961 ⟹ XP_038282889

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	20	8,265,791 - 8,268,944 (+)	NCBI

RefSeq Acc Id:

XM_038502751 ⟹ XP_038358679

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	20	7,987,583 - 7,990,938 (+)	NCBI

RefSeq Acc Id:

XM_038502752 ⟹ XP_038358680

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	20	7,988,021 - 7,990,938 (+)	NCBI

RefSeq Acc Id:

XM_038502753 ⟹ XP_038358681

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	20	7,987,785 - 7,990,938 (+)	NCBI

RefSeq Acc Id:

XM_038565670 ⟹ XP_038421598

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	20	8,306,507 - 8,309,862 (+)	NCBI

RefSeq Acc Id:

XM_038565671 ⟹ XP_038421599

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	20	8,306,945 - 8,309,862 (+)	NCBI

RefSeq Acc Id:

XM_038565672 ⟹ XP_038421600

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	20	8,306,709 - 8,309,862 (+)	NCBI

RefSeq Acc Id:

XM_038629805 ⟹ XP_038485733

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	20	8,333,191 - 8,336,549 (+)	NCBI

RefSeq Acc Id:

XM_038629806 ⟹ XP_038485734

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	20	8,333,629 - 8,336,549 (+)	NCBI

RefSeq Acc Id:

XM_038629807 ⟹ XP_038485735

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	20	8,333,393 - 8,336,549 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005632228	(Get FASTA)	NCBI Sequence Viewer
	XP_005632229	(Get FASTA)	NCBI Sequence Viewer
	XP_022262079	(Get FASTA)	NCBI Sequence Viewer
	XP_038282887	(Get FASTA)	NCBI Sequence Viewer
	XP_038282888	(Get FASTA)	NCBI Sequence Viewer
	XP_038282889	(Get FASTA)	NCBI Sequence Viewer
	XP_038358679	(Get FASTA)	NCBI Sequence Viewer
	XP_038358680	(Get FASTA)	NCBI Sequence Viewer
	XP_038358681	(Get FASTA)	NCBI Sequence Viewer
	XP_038421598	(Get FASTA)	NCBI Sequence Viewer
	XP_038421599	(Get FASTA)	NCBI Sequence Viewer
	XP_038421600	(Get FASTA)	NCBI Sequence Viewer
	XP_038485733	(Get FASTA)	NCBI Sequence Viewer
	XP_038485734	(Get FASTA)	NCBI Sequence Viewer
	XP_038485735	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000041080.3
	ENSCAFP00030008855.1
	ENSCAFP00040038365.1
	ENSCAFP00845011195
	ENSCAFP00845011195.1

RefSeq Acc Id:

XP_005632228 ⟸ XM_005632171

- Peptide Label:

isoform X1

- Sequence:

show sequence

MRPGNSGCHSGASGPRSSAGLSMAGYQLWSPWTPLDESFQWLRHTTPTPSSKHPFRASPCFPHT
PSDLEVQLCFQEVTLVLDSPFLEPGMSPKLPCHTSELRTINNKKGLVRKPQPVRLSGVDSVFGR
VITAQPPKWTGTFRVSDKSAFCKIISRENQWPTGLKEPQIQMTVTMCKQMLRSILLLYATYKKC
TFALQHSK

hide sequence

RefSeq Acc Id:	XP_005632229 ⟸ XM_005632172
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0K5R1 (UniProtKB/TrEMBL), A0A8C0TMG5 (UniProtKB/TrEMBL), A0A8I3RUE1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGYQLWSPWTPLDESFQWLRHTTPTPSSKHPFRASPCFPHTPSDLEVQLCFQEVTLVLDSPFL EPGMSPKLPCHTSELRTINNKKGLVRKPQPVRLSGVDSVFGRVITAQPPKWTGTFRVSDKSAFC KIISRENQWPTGLKEPQIQMTVTMCKQMLRSILLLYATYKKCTFALQHSK hide sequence

RefSeq Acc Id:	XP_022262079 ⟸ XM_022406371
- Peptide Label:	isoform X2
- Sequence:	show sequence MTVISGWWEWRGLSMAGYQLWSPWTPLDESFQWLRHTTPTPSSKHPFRASPCFPHTPSDLEVQL CFQEVTLVLDSPFLEPGMSPKLPCHTSELRTINNKKGLVRKPQPVRLSGVDSVFGRVITAQPPK WTGTFRVSDKSAFCKIISRENQWPTGLKEPQIQMTVTMCKQMLRSILLLYATYKKCTFALQHSK hide sequence

RefSeq Acc Id:

ENSCAFP00000041080 ⟸ ENSCAFT00000049489

RefSeq Acc Id:	XP_038358679 ⟸ XM_038502751
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038358681 ⟸ XM_038502753
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038358680 ⟸ XM_038502752
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038485733 ⟸ XM_038629805
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038485735 ⟸ XM_038629807
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038485734 ⟸ XM_038629806
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038282887 ⟸ XM_038426959
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038282889 ⟸ XM_038426961
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0K5R1 (UniProtKB/TrEMBL), A0A8C0TMG5 (UniProtKB/TrEMBL), A0A8I3RUE1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038282888 ⟸ XM_038426960
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038421598 ⟸ XM_038565670
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038421600 ⟸ XM_038565672
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0K5R1 (UniProtKB/TrEMBL), A0A8C0TMG5 (UniProtKB/TrEMBL), A0A8I3RUE1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038421599 ⟸ XM_038565671
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSCAFP00845011195 ⟸ ENSCAFT00845014453

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000030370	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030005522	UniProtKB/TrEMBL
	ENSCAFG00040023614	UniProtKB/TrEMBL
	ENSCAFG00845008217	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000049489.3	UniProtKB/TrEMBL
	ENSCAFT00030010109.1	UniProtKB/TrEMBL
	ENSCAFT00040043954.1	UniProtKB/TrEMBL
	ENSCAFT00845014453	ENTREZGENE
	ENSCAFT00845014453.1	UniProtKB/TrEMBL
InterPro	FANCD2OS	UniProtKB/TrEMBL
NCBI Gene	FANCD2OS	ENTREZGENE
PANTHER	FANCD2 OPPOSITE STRAND PROTEIN	UniProtKB/TrEMBL
	PTHR31036	UniProtKB/TrEMBL
Pfam	FANCD2OS	UniProtKB/TrEMBL
UniProt	A0A8C0K5R1	ENTREZGENE
	A0A8C0TMG5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3RUE1	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:81267	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar