TEX44 (testis expressed 44) - Rat Genome Database

Name: TEX44
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: TEX44 (testis expressed 44) Canis lupus familiaris

Analyze

Symbol:

TEX44

Name:

testis expressed 44

RGD ID:

12068171

Description:

ASSOCIATED WITH Joubert syndrome 22 (ortholog); Perlman syndrome (ortholog); FOUND IN cytoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

C25H2orf57; testis-expressed protein 44; uncharacterized protein C2orf57 homolog

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TEX44 (testis expressed 44)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Tex44 (testis expressed 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Tex44 (testis expressed 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tex44 (testis expressed 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TEX44 (testis expressed 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tex44 (testis expressed 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TEX44 (testis expressed 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TEX44 (testis expressed 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tex44 (testis expressed 44)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	43,453,253 - 43,454,573 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	43,453,310 - 43,454,437 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	44,011,601 - 44,012,918 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	43,710,636 - 43,711,953 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	25	43,638,003 - 43,639,337 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	43,481,143 - 43,482,460 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	43,637,050 - 43,638,367 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Joubert syndrome 22 (ISO)

Perlman syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (ISO)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

TEX44
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	43,453,253 - 43,454,573 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	43,453,310 - 43,454,437 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	44,011,601 - 44,012,918 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	43,710,636 - 43,711,953 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	25	43,638,003 - 43,639,337 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	43,481,143 - 43,482,460 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	43,637,050 - 43,638,367 (+)	NCBI		UU_Cfam_GSD_1.0

TEX44
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	231,592,864 - 231,594,276 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	231,592,864 - 231,594,276 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	232,457,575 - 232,458,987 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	232,165,856 - 232,167,238 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	226,233,973 - 226,235,392 (+)	NCBI		Celera
Cytogenetic Map	2	q37.1	NCBI
HuRef	2	224,299,530 - 224,300,949 (+)	NCBI		HuRef
CHM1_1	2	232,463,249 - 232,464,668 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	232,077,341 - 232,078,753 (+)	NCBI		T2T-CHM13v2.0

Tex44
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	86,354,051 - 86,355,771 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	86,354,051 - 86,355,774 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	86,426,329 - 86,428,049 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	86,426,329 - 86,428,052 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	88,322,904 - 88,324,624 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	88,257,500 - 88,259,223 (+)	NCBI		MGSCv36	mm8
Celera	1	89,395,430 - 89,397,150 (+)	NCBI		Celera
Cytogenetic Map	1	C5	NCBI
cM Map	1	43.94	NCBI

Tex44
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	94,523,649 - 94,525,067 (+)	NCBI		GRCr8
mRatBN7.2	9	87,075,684 - 87,077,102 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	87,075,684 - 87,077,102 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	95,492,808 - 95,494,226 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	100,621,936 - 100,623,354 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	99,004,031 - 99,005,449 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	93,445,002 - 93,446,420 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	93,445,002 - 93,446,420 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	93,172,940 - 93,174,358 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	85,189,062 - 85,190,480 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	84,491,111 - 84,492,529 (+)	NCBI		Celera
Cytogenetic Map	9	q35	NCBI

Tex44
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955453	4,108,596 - 4,110,610 (-)	NCBI	ChiLan1.0	ChiLan1.0

TEX44
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	134,210,900 - 134,224,686 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	134,225,866 - 134,230,926 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	118,843,674 - 118,845,087 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	237,627,878 - 237,629,298 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	237,627,967 - 237,629,154 (+)	Ensembl	panpan1.1		panPan2

Tex44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	185,584,212 - 185,585,661 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936525	5,354,202 - 5,355,338 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TEX44
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	15	132,266,149 - 132,267,612 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	146,038,817 - 146,042,242 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TEX44
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	117,609,567 - 117,611,518 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	117,610,187 - 117,611,374 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	81,835,439 - 81,836,851 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tex44
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624843	4,673,112 - 4,674,285 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in TEX44
34 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium									8
Low				1		1	1				2
Below cutoff	1	7	2	1	2		1	5		1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038434639	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038511052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038573082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038637325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_847517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000017635 ⟹ ENSCAFP00000016329

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	25	43,453,310 - 43,454,437 (+)	Ensembl

RefSeq Acc Id:

XM_038434639 ⟹ XP_038290567

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	25	43,710,636 - 43,711,953 (+)	NCBI

RefSeq Acc Id:

XM_038511052 ⟹ XP_038366980

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	25	43,638,003 - 43,639,337 (+)	NCBI

RefSeq Acc Id:

XM_038573082 ⟹ XP_038429010

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	25	43,637,050 - 43,638,367 (+)	NCBI

RefSeq Acc Id:

XM_038637325 ⟹ XP_038493253

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	25	43,481,143 - 43,482,460 (+)	NCBI

RefSeq Acc Id:

XM_847517 ⟹ XP_852610

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	25	43,453,253 - 43,454,573 (+)	NCBI
Dog10K_Boxer_Tasha	25	44,011,601 - 44,012,918 (+)	NCBI

Sequence:

show sequence

CTTGGCCCGGCAGGGCTGTGGCCACTCTGCAGCCAGAGCAAGTGACAGAGGACCTAGATGACCA
CCACGCCCTCGAGAGAGTCCAGAACTGCCAGCATCCCCACAGACGGCAACAGCAGATCCCCGGA
TGGTCCAGGAGCGGGGTCCCAAAATCAGGTGGGACCAGCGGCTAATGGTGCCATAGCATCACCT
GAACAGCAGGATGTAGATCAGGCCTCTGTCGATTCGGTGACCTCCAAACCCACATCAGCATCTG
GGGACCAGGACAGCTATGCAGTGGCTGAAGGGCACAGCCAGGAGCCCAGAGAGGCCTCAAACAC
TCTACAAATGTCCACAAGCCCCCAGGACCCAGCATGGGATAGACAAGGGCAAGATTCCAGGATG
ATTCAGGGCCTTCAGACCTCCCAACGTGACTCCCTGGCAAGAGAAGAGACCCCACAATCGGCAG
GCATCCCGGACAGAGAACAGGAATCAGCCCCAACCACCCCAAGCGCTGAGGTGCAGCCCTCCAG
AGCCGTGGATGCCCAGCCCGTGGGGAGCGGGGCAGACACGGCTAGGCAGCCGCGCGGTCAGGAC
ACCAGCGCCACCGAGTCTATGGAGGCAGATCCTGAGCGTCCGGAGCCCGTGAGCCTTGACACCG
AAGCTTTGCCAGGAGCTGAGTCCCAGGGAGTGACCGAAGGGGATTTGGGGGAGCGCTCCAGAGA
CCTGAGGAGGCCTTCAGTGGCCCCAGGAGGCAGTGGCCCACCCTCGCCCGGCCCCCAAGAGGTG
GCCCTGGGGGGGAGGTCCCTCGACTCCAGCCTTTGCATGGCCAACGAGGAGGACAGCTATATGC
GCTCCATGACCAGCCTGCTGGGCGGAGGCGAGGGGTCCATCAGCTCCCTGGCAGACGTCCTCGT
GTGGTCTGAGACCACCGTGGGCATGGCCTCGGCCCTGCTGGCCTCCGGCCACAGCTCGGTGACA
GACCTGCTGCACAGCCCGGGGCCCAGCCTGCGCTCCGTCTCCAGTATCCTGGGGAGCACCTTCT
CCTCTGGGCTGATGGCGGGGACCAGCCTGGCCCTGCGCTCTGTCACCCACCTGCTGGAGAGGGT
GGAGCAGAGGACCCTAGAGGGCGTCCGCTCGGCCGTGCGCTACCTGACCAGCCACCTCGTTCCC
CACCAGGCCCATGCCAGCCCAAACTCCGGCTAGACCCCAATAAGGGAGCCCTCCAGGGGCCGGC
TTGGCAGCCTCTGAGAGCCCAGGGCCCCGCATGCCTGCTCCCCTGCCCGCCCCTGCACTGGCCA
GCTCTCCCCGGATCAGGCAATAAAGCACTGGAGAGCGTTTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038290567	(Get FASTA)	NCBI Sequence Viewer
	XP_038366980	(Get FASTA)	NCBI Sequence Viewer
	XP_038429010	(Get FASTA)	NCBI Sequence Viewer
	XP_038493253	(Get FASTA)	NCBI Sequence Viewer
	XP_852610	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000016329.4
	ENSCAFP00030029145.1

RefSeq Acc Id:	XP_852610 ⟸ XM_847517
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NMU8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTTTPSRESRTASIPTDGNSRSPDGPGAGSQNQVGPAANGAIASPEQQDVDQASVDSVTSKPTS ASGDQDSYAVAEGHSQEPREASNTLQMSTSPQDPAWDRQGQDSRMIQGLQTSQRDSLAREETPQ SAGIPDREQESAPTTPSAEVQPSRAVDAQPVGSGADTARQPRGQDTSATESMEADPERPEPVSL DTEALPGAESQGVTEGDLGERSRDLRRPSVAPGGSGPPSPGPQEVALGGRSLDSSLCMANEEDS YMRSMTSLLGGGEGSISSLADVLVWSETTVGMASALLASGHSSVTDLLHSPGPSLRSVSSILGS TFSSGLMAGTSLALRSVTHLLERVEQRTLEGVRSAVRYLTSHLVPHQAHASPNSG hide sequence

RefSeq Acc Id:

ENSCAFP00000016329 ⟸ ENSCAFT00000017635

RefSeq Acc Id:	XP_038366980 ⟸ XM_038511052
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038493253 ⟸ XM_038637325
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038290567 ⟸ XM_038434639
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NMU8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038429010 ⟸ XM_038573082
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NMU8 (UniProtKB/TrEMBL)

Promoters

RGD ID:

13687823

Promoter ID:

EPDNEW_C5888

Type:

single initiation site

Name:

TEX44_1

Description:

testis expressed 44

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	25	43,453,281 - 43,453,341	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000011088	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030018143	UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000017635.4	UniProtKB/TrEMBL
	ENSCAFT00030033407.1	UniProtKB/TrEMBL
InterPro	DUF4678	UniProtKB/TrEMBL
NCBI Gene	TEX44	ENTREZGENE
PANTHER	PTHR37365	UniProtKB/TrEMBL
	TESTIS-EXPRESSED PROTEIN 44	UniProtKB/TrEMBL
Pfam	DUF4678	UniProtKB/TrEMBL
UniProt	A0A8C0NMU8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0SG36_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:47278	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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