TRIM68 (tripartite motif containing 68) - Rat Genome Database

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Gene: TRIM68 (tripartite motif containing 68) Canis lupus familiaris
Analyze
Symbol: TRIM68
Name: tripartite motif containing 68
RGD ID: 12066419
Description: ENCODES a protein that exhibits androgen receptor binding (inferred); histone acetyltransferase binding (inferred); identical protein binding (inferred); INVOLVED IN protein autoubiquitination (inferred); regulation of androgen receptor signaling pathway (inferred); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: E3 ubiquitin-protein ligase TRIM68
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12126,982,173 - 26,992,162 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2126,982,876 - 26,989,144 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2126,764,907 - 26,775,084 (-)NCBI
ROS_Cfam_1.02127,220,314 - 27,230,498 (-)NCBI
UMICH_Zoey_3.12126,985,680 - 26,995,857 (-)NCBI
UNSW_CanFamBas_1.02127,223,750 - 27,233,719 (-)NCBI
UU_Cfam_GSD_1.02127,113,402 - 27,123,584 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
TRIM68
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12126,982,173 - 26,992,162 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2126,982,876 - 26,989,144 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2126,764,907 - 26,775,084 (-)NCBI
ROS_Cfam_1.02127,220,314 - 27,230,498 (-)NCBI
UMICH_Zoey_3.12126,985,680 - 26,995,857 (-)NCBI
UNSW_CanFamBas_1.02127,223,750 - 27,233,719 (-)NCBI
UU_Cfam_GSD_1.02127,113,402 - 27,123,584 (-)NCBI
TRIM68
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl114,598,672 - 4,608,231 (-)EnsemblGRCh38hg38GRCh38
GRCh38114,598,672 - 4,608,231 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37114,619,902 - 4,629,461 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36114,576,478 - 4,586,013 (-)NCBINCBI36hg18NCBI36
Build 34114,576,477 - 4,586,013NCBI
Celera114,744,108 - 4,753,643 (-)NCBI
Cytogenetic Map11p15.4NCBI
HuRef114,278,327 - 4,287,914 (-)NCBIHuRef
CHM1_1114,619,835 - 4,629,422 (-)NCBICHM1_1
Trim68
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397102,326,786 - 102,336,536 (-)NCBIGRCm39mm39
GRCm39 Ensembl7102,326,789 - 102,336,534 (-)Ensembl
GRCm387102,677,579 - 102,687,335 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7102,677,582 - 102,687,327 (-)EnsemblGRCm38mm10GRCm38
MGSCv377109,826,094 - 109,835,840 (-)NCBIGRCm37mm9NCBIm37
MGSCv367102,551,400 - 102,561,075 (-)NCBImm8
Celera7103,040,567 - 103,050,346 (-)NCBICelera
Cytogenetic Map7E3NCBI
Trim68
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21157,114,044 - 157,127,494 (-)NCBI
Rnor_6.0 Ensembl1167,835,647 - 167,849,834 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01167,835,773 - 167,849,880 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01174,021,176 - 174,033,554 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1155,179,037 - 155,191,709 (-)NCBICelera
Cytogenetic Map1q32NCBI
TRIM68
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1114,438,329 - 4,447,899 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl114,438,329 - 4,447,899 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0114,773,343 - 4,782,898 (-)NCBIMhudiblu_PPA_v0panPan3
Trim68
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494758,872,624 - 58,885,691 (+)NCBI
SpeTri2.0NW_004936498472,197 - 481,235 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM68
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl95,502,988 - 5,510,779 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.195,502,931 - 5,516,936 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.296,136,157 - 6,146,000 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM68
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1162,270,614 - 62,280,241 (+)NCBI
Vero_WHO_p1.0NW_02366604363,645,908 - 63,657,133 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 10 6 7
Low 5 5 12 6 6 6 6 6 6 8 3 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005633581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005633582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022407756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038456291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038505643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038505644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038505645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038505646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038505647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038568837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038568838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038568839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038568840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038568841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038633006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038633007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038633008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038633009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038633010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_542351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000009822   ⟹   ENSCAFP00000009118
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2126,982,876 - 26,989,144 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000063244   ⟹   ENSCAFP00000060035
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2126,984,031 - 26,989,144 (-)Ensembl
RefSeq Acc Id: XM_005633581   ⟹   XP_005633638
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12126,983,540 - 26,991,664 (-)NCBI
Dog10K_Boxer_Tasha2126,766,274 - 26,773,885 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005633582   ⟹   XP_005633639
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12126,982,173 - 26,992,162 (-)NCBI
Dog10K_Boxer_Tasha2126,764,907 - 26,775,084 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022407756   ⟹   XP_022263464
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12126,983,540 - 26,992,019 (-)NCBI
Dog10K_Boxer_Tasha2126,766,274 - 26,774,948 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038430302   ⟹   XP_038286230
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02127,221,681 - 27,230,498 (-)NCBI
RefSeq Acc Id: XM_038430303   ⟹   XP_038286231
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02127,221,681 - 27,229,293 (-)NCBI
RefSeq Acc Id: XM_038430304   ⟹   XP_038286232
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02127,221,681 - 27,230,362 (-)NCBI
RefSeq Acc Id: XM_038430305   ⟹   XP_038286233
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02127,220,314 - 27,230,498 (-)NCBI
RefSeq Acc Id: XM_038430306   ⟹   XP_038286234
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02127,221,681 - 27,230,498 (-)NCBI
RefSeq Acc Id: XM_038456291   ⟹   XP_038312219
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2126,766,274 - 26,775,084 (-)NCBI
RefSeq Acc Id: XM_038505643   ⟹   XP_038361571
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12126,987,046 - 26,995,857 (-)NCBI
RefSeq Acc Id: XM_038505644   ⟹   XP_038361572
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12126,987,046 - 26,994,658 (-)NCBI
RefSeq Acc Id: XM_038505645   ⟹   XP_038361573
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12126,987,046 - 26,995,721 (-)NCBI
RefSeq Acc Id: XM_038505646   ⟹   XP_038361574
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12126,985,680 - 26,995,857 (-)NCBI
RefSeq Acc Id: XM_038505647   ⟹   XP_038361575
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12126,987,046 - 26,995,857 (-)NCBI
RefSeq Acc Id: XM_038568837   ⟹   XP_038424765
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02127,114,769 - 27,123,584 (-)NCBI
RefSeq Acc Id: XM_038568838   ⟹   XP_038424766
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02127,114,769 - 27,122,381 (-)NCBI
RefSeq Acc Id: XM_038568839   ⟹   XP_038424767
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02127,114,769 - 27,123,448 (-)NCBI
RefSeq Acc Id: XM_038568840   ⟹   XP_038424768
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02127,113,402 - 27,123,584 (-)NCBI
RefSeq Acc Id: XM_038568841   ⟹   XP_038424769
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02127,114,769 - 27,123,584 (-)NCBI
RefSeq Acc Id: XM_038633006   ⟹   XP_038488934
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02127,225,117 - 27,233,719 (-)NCBI
RefSeq Acc Id: XM_038633007   ⟹   XP_038488935
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02127,225,117 - 27,233,244 (-)NCBI
RefSeq Acc Id: XM_038633008   ⟹   XP_038488936
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02127,225,117 - 27,233,583 (-)NCBI
RefSeq Acc Id: XM_038633009   ⟹   XP_038488937
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02127,223,750 - 27,233,719 (-)NCBI
RefSeq Acc Id: XM_038633010   ⟹   XP_038488938
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02127,225,117 - 27,233,719 (-)NCBI
RefSeq Acc Id: XM_542351   ⟹   XP_542351
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12126,983,540 - 26,992,162 (-)NCBI
Dog10K_Boxer_Tasha2126,766,274 - 26,775,084 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005633639   ⟸   XM_005633582
- Peptide Label: isoform X2
- UniProtKB: F1Q125 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_542351   ⟸   XM_542351
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005633638   ⟸   XM_005633581
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_022263464   ⟸   XM_022407756
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCAFP00000060035   ⟸   ENSCAFT00000063244
RefSeq Acc Id: ENSCAFP00000009118   ⟸   ENSCAFT00000009822
RefSeq Acc Id: XP_038361574   ⟸   XM_038505646
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038361575   ⟸   XM_038505647
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038361571   ⟸   XM_038505643
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038361573   ⟸   XM_038505645
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038361572   ⟸   XM_038505644
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038488937   ⟸   XM_038633009
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038488938   ⟸   XM_038633010
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038488934   ⟸   XM_038633006
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038488936   ⟸   XM_038633008
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038488935   ⟸   XM_038633007
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038286233   ⟸   XM_038430305
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038286234   ⟸   XM_038430306
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038286230   ⟸   XM_038430302
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038286232   ⟸   XM_038430304
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038286231   ⟸   XM_038430303
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038312219   ⟸   XM_038456291
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038424768   ⟸   XM_038568840
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038424769   ⟸   XM_038568841
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038424765   ⟸   XM_038568837
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038424767   ⟸   XM_038568839
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038424766   ⟸   XM_038568838
- Peptide Label: isoform X1
Protein Domains
B box-type   B30.2/SPRY   RING-type

Promoters
RGD ID:13687214
Promoter ID:EPDNEW_C5282
Type:multiple initiation site
Name:TRIM68_1
Description:tripartite motif containing 68
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12126,992,050 - 26,992,110EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000024741 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000009118 ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFP00000060035 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000009822 UniProtKB/TrEMBL
  ENSCAFT00000063244 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  Butyrophylin UniProtKB/TrEMBL
  ConA-like_dom UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
  TRIM68_RING-HC UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report cfa:485233 UniProtKB/TrEMBL
NCBI Gene TRIM68 ENTREZGENE
Pfam PRY UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
  zf-B_box UniProtKB/TrEMBL
PRINTS BUTYPHLNCDUF UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART BBOX UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/TrEMBL
UniProt A0A5F4D5F2_CANLF UniProtKB/TrEMBL
  F1Q125 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:47835 ENTREZGENE