MITD1 (microtubule interacting and trafficking domain containing 1) - Rat Genome Database

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Gene: MITD1 (microtubule interacting and trafficking domain containing 1) Canis lupus familiaris
Analyze
Symbol: MITD1
Name: microtubule interacting and trafficking domain containing 1
RGD ID: 12063399
Description: ENCODES a protein that exhibits identical protein binding (inferred); phosphatidylinositol binding (inferred); protein domain specific binding (inferred); INVOLVED IN multivesicular body sorting pathway (ortholog); viral budding via host ESCRT complex (ortholog); ASSOCIATED WITH Cardiovascular Abnormalities (ortholog); Failure to Thrive (ortholog); genetic disease (ortholog); FOUND IN intracellular membrane-bounded organelle (inferred); membrane (inferred); midbody (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: MIT domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11043,513,240 - 43,525,543 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1043,513,277 - 43,523,883 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1043,436,787 - 43,456,434 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01044,385,417 - 44,405,067 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1044,385,431 - 44,398,060 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11044,095,468 - 44,115,110 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01044,378,979 - 44,391,206 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01044,563,444 - 44,583,084 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MITD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11043,513,240 - 43,525,543 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1043,513,277 - 43,523,883 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1043,436,787 - 43,456,434 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01044,385,417 - 44,405,067 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1044,385,431 - 44,398,060 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11044,095,468 - 44,115,110 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01044,378,979 - 44,391,206 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01044,563,444 - 44,583,084 (+)NCBIUU_Cfam_GSD_1.0
MITD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38299,161,427 - 99,181,058 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl299,161,427 - 99,181,058 (-)EnsemblGRCh38hg38GRCh38
GRCh37299,785,726 - 99,797,521 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36299,152,158 - 99,163,924 (-)NCBINCBI36Build 36hg18NCBI36
Celera293,990,319 - 94,002,087 (-)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef293,551,497 - 93,563,265 (-)NCBIHuRef
CHM1_1299,790,624 - 99,802,390 (-)NCBICHM1_1
T2T-CHM13v2.0299,620,306 - 99,639,936 (-)NCBIT2T-CHM13v2.0
Mitd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39137,913,882 - 37,929,530 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl137,913,882 - 37,929,492 (-)EnsemblGRCm39 Ensembl
GRCm38137,874,801 - 37,890,449 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl137,874,801 - 37,890,411 (-)EnsemblGRCm38mm10GRCm38
MGSCv37137,935,735 - 37,947,256 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36137,823,275 - 37,834,979 (-)NCBIMGSCv36mm8
Celera137,659,809 - 37,671,331 (-)NCBICelera
Cytogenetic Map1BNCBI
cM Map116.13NCBI
Mitd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8947,609,743 - 47,621,033 (-)NCBIGRCr8
mRatBN7.2940,113,943 - 40,125,280 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl940,113,946 - 40,125,289 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx948,609,792 - 48,621,053 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0953,732,547 - 53,743,808 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0952,014,641 - 52,025,935 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0944,472,364 - 44,483,723 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl944,472,365 - 44,560,837 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0944,169,744 - 44,181,102 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4936,827,857 - 36,839,148 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1936,829,271 - 36,840,562 (-)NCBI
Celera937,868,172 - 37,879,466 (-)NCBICelera
Cytogenetic Map9q21NCBI
Mitd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554705,493,144 - 5,509,437 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554705,493,361 - 5,509,437 (-)NCBIChiLan1.0ChiLan1.0
MITD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21229,248,958 - 29,263,284 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A29,251,722 - 29,266,044 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A100,116,263 - 100,130,580 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A100,097,758 - 100,111,589 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A100,097,758 - 100,111,589 (-)Ensemblpanpan1.1panPan2
Mitd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629284,937,949 - 84,949,823 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366611,618,975 - 1,633,278 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366611,619,703 - 1,632,558 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MITD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl355,054,517 - 55,069,866 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1355,054,475 - 55,078,180 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2357,688,426 - 57,703,819 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MITD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1142,894,096 - 2,902,790 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041170,496,653 - 170,506,461 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mitd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247494,172,007 - 4,185,890 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247494,166,358 - 4,185,980 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MITD1
162 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 3 2 3 6 1
Low 5 5 17 6 3 6 4 6 9 8 4 5
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014117484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022424603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038489056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038489057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038551042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038551043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038614955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038614956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005332131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005365784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005415635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005433586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000003600   ⟹   ENSCAFP00000003334
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1043,513,277 - 43,523,883 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845031922   ⟹   ENSCAFP00845024963
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1044,385,431 - 44,396,034 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845031985   ⟹   ENSCAFP00845025011
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1044,385,458 - 44,398,060 (+)Ensembl
RefSeq Acc Id: XM_014117484   ⟹   XP_013972959
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11043,513,242 - 43,524,012 (+)NCBI
Dog10K_Boxer_Tasha1043,436,787 - 43,447,527 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022424603   ⟹   XP_022280311
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11043,513,240 - 43,525,543 (+)NCBI
Dog10K_Boxer_Tasha1043,436,787 - 43,449,066 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038489056   ⟹   XP_038344984
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11044,095,468 - 44,107,748 (+)NCBI
RefSeq Acc Id: XM_038489057   ⟹   XP_038344985
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11044,095,468 - 44,106,206 (+)NCBI
RefSeq Acc Id: XM_038551042   ⟹   XP_038406970
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01044,563,444 - 44,575,722 (+)NCBI
RefSeq Acc Id: XM_038551043   ⟹   XP_038406971
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01044,563,444 - 44,574,180 (+)NCBI
RefSeq Acc Id: XM_038614955   ⟹   XP_038470883
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01044,378,979 - 44,391,206 (+)NCBI
RefSeq Acc Id: XM_038614956   ⟹   XP_038470884
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01044,378,979 - 44,389,661 (+)NCBI
RefSeq Acc Id: XM_038680329   ⟹   XP_038536257
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01044,385,417 - 44,397,705 (+)NCBI
RefSeq Acc Id: XM_038680330   ⟹   XP_038536258
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01044,385,417 - 44,396,163 (+)NCBI
RefSeq Acc Id: XR_005332131
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11044,095,468 - 44,115,110 (+)NCBI
RefSeq Acc Id: XR_005365784
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01044,563,444 - 44,583,084 (+)NCBI
RefSeq Acc Id: XR_005415635
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1043,436,787 - 43,456,434 (+)NCBI
RefSeq Acc Id: XR_005433586
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01044,385,417 - 44,405,067 (+)NCBI
RefSeq Acc Id: XP_013972959   ⟸   XM_014117484
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SRU4 (UniProtKB/TrEMBL),   A0A8I3P621 (UniProtKB/TrEMBL),   A0A8I3P657 (UniProtKB/TrEMBL),   A0A8P0TLK4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022280311   ⟸   XM_022424603
- Peptide Label: isoform X1
- UniProtKB: A0A8I3P657 (UniProtKB/TrEMBL),   A0A8P0TLK4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000003334   ⟸   ENSCAFT00000003600
RefSeq Acc Id: XP_038344984   ⟸   XM_038489056
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038344985   ⟸   XM_038489057
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038470883   ⟸   XM_038614955
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038470884   ⟸   XM_038614956
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038536257   ⟸   XM_038680329
- Peptide Label: isoform X1
- UniProtKB: A0A8I3P657 (UniProtKB/TrEMBL),   A0A8P0TLK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038536258   ⟸   XM_038680330
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SRU4 (UniProtKB/TrEMBL),   A0A8I3P621 (UniProtKB/TrEMBL),   A0A8I3P657 (UniProtKB/TrEMBL),   A0A8P0TLK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038406970   ⟸   XM_038551042
- Peptide Label: isoform X1
- UniProtKB: A0A8I3P657 (UniProtKB/TrEMBL),   A0A8P0TLK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038406971   ⟸   XM_038551043
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SRU4 (UniProtKB/TrEMBL),   A0A8I3P621 (UniProtKB/TrEMBL),   A0A8I3P657 (UniProtKB/TrEMBL),   A0A8P0TLK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845025011   ⟸   ENSCAFT00845031985
RefSeq Acc Id: ENSCAFP00845024963   ⟸   ENSCAFT00845031922
Protein Domains
MIT

Promoters
RGD ID:13685032
Promoter ID:EPDNEW_C3100
Type:multiple initiation site
Name:MITD1_1
Description:microtubule interacting and trafficking domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11043,513,267 - 43,513,327EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000002294 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030019596 UniProtKB/TrEMBL
  ENSCAFG00040015915 UniProtKB/TrEMBL
  ENSCAFG00845018043 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000003600.4 UniProtKB/TrEMBL
  ENSCAFT00000101711.1 UniProtKB/TrEMBL
  ENSCAFT00030035980.1 UniProtKB/TrEMBL
  ENSCAFT00030036035.1 UniProtKB/TrEMBL
  ENSCAFT00040029295.1 UniProtKB/TrEMBL
  ENSCAFT00845031922 ENTREZGENE
  ENSCAFT00845031922.1 UniProtKB/TrEMBL
  ENSCAFT00845031985.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.870.30 UniProtKB/TrEMBL
  Phosphotransferase system, lactose/cellobiose-type IIA subunit UniProtKB/TrEMBL
InterPro MIT_dom UniProtKB/TrEMBL
  MIT_dom_sf UniProtKB/TrEMBL
  MITD1_C UniProtKB/TrEMBL
  MITD1_C_sf UniProtKB/TrEMBL
  MITD1_N UniProtKB/TrEMBL
KEGG Report cfa:474559 UniProtKB/TrEMBL
NCBI Gene MITD1 ENTREZGENE
PANTHER MIT DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam MIT UniProtKB/TrEMBL
  MIT_C UniProtKB/TrEMBL
SMART MIT UniProtKB/TrEMBL
Superfamily-SCOP SSF116846 UniProtKB/TrEMBL
UniProt A0A8C0NS43_CANLF UniProtKB/TrEMBL
  A0A8C0SRU4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P621 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P657 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TLK4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:43247 ENTREZGENE