TMBIM6 (transmembrane BAX inhibitor motif containing 6) - Rat Genome Database

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Gene: TMBIM6 (transmembrane BAX inhibitor motif containing 6) Canis lupus familiaris
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Symbol: TMBIM6
Name: transmembrane BAX inhibitor motif containing 6
RGD ID: 12059348
Description: ENCODES a protein that exhibits endoribonuclease inhibitor activity (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN endoplasmic reticulum calcium ion homeostasis (ortholog); intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (ortholog); lung development (ortholog); ASSOCIATED WITH cervical squamous cell carcinoma (ortholog); genetic disease (ortholog); invasive ductal carcinoma (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: bax inhibitor 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: LOC476118  
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1274,921,606 - 4,944,830 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl274,921,606 - 4,944,783 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2741,313,127 - 41,336,268 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0274,971,016 - 4,994,198 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl274,971,043 - 4,993,921 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1274,936,445 - 4,959,768 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0274,926,010 - 4,949,602 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02741,707,565 - 41,730,952 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TMBIM6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1274,921,606 - 4,944,830 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl274,921,606 - 4,944,783 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2741,313,127 - 41,336,268 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0274,971,016 - 4,994,198 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl274,971,043 - 4,993,921 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1274,936,445 - 4,959,768 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0274,926,010 - 4,949,602 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02741,707,565 - 41,730,952 (+)NCBIUU_Cfam_GSD_1.0
TMBIM6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381249,741,557 - 49,764,934 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1249,707,725 - 49,764,934 (+)EnsemblGRCh38hg38GRCh38
GRCh371250,135,340 - 50,158,717 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361248,421,560 - 48,444,984 (+)NCBINCBI36Build 36hg18NCBI36
Build 341248,432,511 - 48,444,760NCBI
Celera1248,931,228 - 48,954,652 (+)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1247,166,860 - 47,190,297 (+)NCBIHuRef
CHM1_11250,101,626 - 50,125,066 (+)NCBICHM1_1
T2T-CHM13v2.01249,704,579 - 49,727,957 (+)NCBIT2T-CHM13v2.0
Tmbim6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391599,290,828 - 99,307,930 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1599,290,763 - 99,307,930 (+)EnsemblGRCm39 Ensembl
GRCm381599,392,947 - 99,410,049 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1599,392,882 - 99,410,049 (+)EnsemblGRCm38mm10GRCm38
MGSCv371599,223,378 - 99,240,480 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361599,221,020 - 99,238,074 (+)NCBIMGSCv36mm8
Celera15101,548,094 - 101,565,263 (+)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.13NCBI
Tmbim6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87132,405,217 - 132,422,492 (+)NCBIGRCr8
mRatBN7.27130,527,313 - 130,542,567 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7130,527,316 - 130,543,633 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7132,332,457 - 132,347,226 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07134,558,037 - 134,572,806 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07134,470,553 - 134,485,322 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07141,039,433 - 141,070,269 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7141,034,982 - 141,069,989 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X115,557,801 - 115,572,802 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47138,139,438 - 138,154,243 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17138,216,492 - 138,230,680 (+)NCBI
Celera7127,009,876 - 127,024,679 (+)NCBICelera
Cytogenetic Map7q36NCBI
Tmbim6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955547335,275 - 358,503 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955547335,344 - 358,503 (+)NCBIChiLan1.0ChiLan1.0
TMBIM6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21044,420,329 - 44,443,769 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11244,417,090 - 44,440,530 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01238,986,844 - 39,010,307 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11239,879,951 - 39,902,607 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1239,879,951 - 39,902,303 (-)Ensemblpanpan1.1panPan2
Tmbim6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494565,716,130 - 65,736,962 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365127,427,729 - 7,449,078 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365127,427,926 - 7,448,700 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMBIM6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl515,674,057 - 15,692,936 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1515,674,028 - 15,692,944 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TMBIM6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11145,976,689 - 46,001,021 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1145,976,700 - 46,001,457 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037200,122,797 - 200,147,849 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmbim6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248162,519,839 - 2,540,766 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMBIM6
349 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001252399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005636692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022410856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038437760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038437761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN000654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN353594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN872399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN880233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN880529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GR901946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000039185   ⟹   ENSCAFP00000035002
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl274,921,606 - 4,944,783 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845033360   ⟹   ENSCAFP00845026112
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl274,971,043 - 4,993,921 (-)Ensembl
RefSeq Acc Id: NM_001252399   ⟹   NP_001239328
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1274,921,606 - 4,944,783 (-)NCBI
Dog10K_Boxer_Tasha2741,313,127 - 41,336,268 (+)NCBI
ROS_Cfam_1.0274,971,016 - 4,994,188 (-)NCBI
UMICH_Zoey_3.1274,936,445 - 4,959,768 (-)NCBI
UNSW_CanFamBas_1.0274,926,010 - 4,949,602 (-)NCBI
UU_Cfam_GSD_1.02741,707,565 - 41,730,952 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038437760   ⟹   XP_038293688
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0274,972,946 - 4,993,490 (-)NCBI
RefSeq Acc Id: XM_038437761   ⟹   XP_038293689
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0274,972,946 - 4,994,198 (-)NCBI
RefSeq Acc Id: NP_001239328   ⟸   NM_001252399
- UniProtKB: A0A8C0KJ61 (UniProtKB/TrEMBL),   A0A8C0TLC2 (UniProtKB/TrEMBL),   A0A8P0PPC2 (UniProtKB/TrEMBL),   A0A8I3MQ85 (UniProtKB/TrEMBL),   A0A8I3P7J8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000035002   ⟸   ENSCAFT00000039185
RefSeq Acc Id: XP_038293689   ⟸   XM_038437761
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KJ61 (UniProtKB/TrEMBL),   A0A8C0TLC2 (UniProtKB/TrEMBL),   A0A8P0PPC2 (UniProtKB/TrEMBL),   A0A8I3MQ85 (UniProtKB/TrEMBL),   A0A8I3P7J8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038293688   ⟸   XM_038437760
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KJ61 (UniProtKB/TrEMBL),   A0A8C0TLC2 (UniProtKB/TrEMBL),   A0A8P0PPC2 (UniProtKB/TrEMBL),   A0A8I3MQ85 (UniProtKB/TrEMBL),   A0A8I3P7J8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845026112   ⟸   ENSCAFT00845033360

Promoters
RGD ID:13688107
Promoter ID:EPDNEW_C6176
Type:multiple initiation site
Name:TMBIM6_1
Description:transmembrane BAX inhibitor motif containing 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1274,944,792 - 4,944,852EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000008400 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00000054501 UniProtKB/TrEMBL
  ENSCAFG00030018768 UniProtKB/TrEMBL
  ENSCAFG00040023573 UniProtKB/TrEMBL
  ENSCAFG00845005793 UniProtKB/TrEMBL
  ENSCAFG00845018887 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000039185.3 UniProtKB/TrEMBL
  ENSCAFT00000094893.1 UniProtKB/TrEMBL
  ENSCAFT00000104266.1 UniProtKB/TrEMBL
  ENSCAFT00000109539.1 UniProtKB/TrEMBL
  ENSCAFT00030034582.1 UniProtKB/TrEMBL
  ENSCAFT00040043914.1 UniProtKB/TrEMBL
  ENSCAFT00845010246.1 UniProtKB/TrEMBL
  ENSCAFT00845033360 ENTREZGENE
  ENSCAFT00845033360.1 UniProtKB/TrEMBL
InterPro Bax_inhbtr1_CS UniProtKB/TrEMBL
  Bax_inhibitor_1-related UniProtKB/TrEMBL
KEGG Report cfa:477614 UniProtKB/TrEMBL
NCBI Gene TMBIM6 ENTREZGENE
PANTHER BAX INHIBITOR 1 UniProtKB/TrEMBL
  PTHR23291 UniProtKB/TrEMBL
Pfam Bax1-I UniProtKB/TrEMBL
PROSITE BI1 UniProtKB/TrEMBL
UniProt A0A8C0KJ61 ENTREZGENE
  A0A8C0TLC2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MQ85 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P7J8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PN94_CANLF UniProtKB/TrEMBL
  A0A8P0PPC2 ENTREZGENE
  A0A8P0TL41_CANLF UniProtKB/TrEMBL
UniProt Secondary A0A8P0PPC2 UniProtKB/TrEMBL
VGNC ID VGNC:47419 ENTREZGENE