GRIPAP1 (GRIP1 associated protein 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: GRIPAP1 (GRIP1 associated protein 1) Canis lupus familiaris
Analyze
Symbol: GRIPAP1
Name: GRIP1 associated protein 1
RGD ID: 12058882
Description: ENCODES a protein that exhibits identical protein binding (inferred); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); neurodegeneration with brain iron accumulation 5 (ortholog); FOUND IN extrinsic component of postsynaptic early endosome membrane (ortholog); glutamatergic synapse (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: GRIP1-associated protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X42,121,646 - 42,145,330 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX42,121,301 - 42,145,218 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX16,497,529 - 16,520,822 (-)NCBI
ROS_Cfam_1.0X42,258,246 - 42,281,569 (-)NCBI
UMICH_Zoey_3.1X42,244,505 - 42,267,815 (-)NCBI
UNSW_CanFamBas_1.0X42,232,713 - 42,255,999 (-)NCBI
UU_Cfam_GSD_1.0X42,326,953 - 42,350,247 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
GRIPAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X42,121,646 - 42,145,330 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX42,121,301 - 42,145,218 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX16,497,529 - 16,520,822 (-)NCBI
ROS_Cfam_1.0X42,258,246 - 42,281,569 (-)NCBI
UMICH_Zoey_3.1X42,244,505 - 42,267,815 (-)NCBI
UNSW_CanFamBas_1.0X42,232,713 - 42,255,999 (-)NCBI
UU_Cfam_GSD_1.0X42,326,953 - 42,350,247 (-)NCBI
GRIPAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX48,973,720 - 49,002,264 (-)EnsemblGRCh38hg38GRCh38
GRCh38X48,973,723 - 49,002,264 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X48,830,134 - 48,858,675 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X48,715,078 - 48,743,619 (-)NCBINCBI36hg18NCBI36
Build 34X48,589,582 - 48,614,923NCBI
CeleraX52,807,255 - 52,833,383 (+)NCBI
Cytogenetic MapXp11.23NCBI
HuRefX46,487,542 - 46,516,750 (-)NCBIHuRef
CHM1_1X48,861,436 - 48,889,990 (-)NCBICHM1_1
Gripap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,656,009 - 7,686,806 (+)NCBIGRCm39mm39
GRCm39 EnsemblX7,656,004 - 7,686,806 (+)Ensembl
GRCm38X7,789,961 - 7,820,567 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,789,765 - 7,820,567 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X7,367,121 - 7,397,689 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X6,946,954 - 6,977,522 (+)NCBImm8
CeleraX3,649,702 - 3,680,935 (-)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.51NCBI
Gripap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X14,678,896 - 14,708,747 (-)NCBImRatBN7.2
mRatBN7.2 EnsemblX14,678,898 - 14,708,679 (-)Ensembl
Rnor_6.0X15,523,929 - 15,553,702 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX15,523,929 - 15,553,720 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X16,305,164 - 16,334,935 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X26,713,439 - 26,743,461 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X26,766,907 - 26,796,928 (-)NCBI
CeleraX14,763,609 - 14,793,412 (-)NCBICelera
Cytogenetic MapXq12NCBI
Gripap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955543500,340 - 527,267 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955543500,340 - 527,243 (-)NCBIChiLan1.0ChiLan1.0
GRIPAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X49,128,760 - 49,157,059 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX49,128,760 - 49,157,059 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X41,271,762 - 41,300,327 (-)NCBIMhudiblu_PPA_v0panPan3
Gripap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X34,652,314 - 34,676,582 (-)NCBI
SpeTri2.0NW_004936721892,704 - 916,965 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRIPAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX43,043,029 - 43,070,669 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X43,043,613 - 43,070,363 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X47,897,905 - 47,917,864 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GRIPAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X46,093,225 - 46,120,097 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 EnsemblX46,091,584 - 46,120,097 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607611,578,935 - 11,606,742 (-)NCBIVero_WHO_p1.0
Gripap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624893753,111 - 778,563 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 4 17 1 6 1 6 1 12 8 10 6
Low 1 5 5 5 5
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005641338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014111784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038523421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038523422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038587378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038587379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_548991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000024947   ⟹   ENSCAFP00000023148
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX42,121,830 - 42,145,218 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000024952   ⟹   ENSCAFP00000023153
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX42,121,830 - 42,145,218 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000073586   ⟹   ENSCAFP00000053793
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX42,121,301 - 42,145,218 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000075664   ⟹   ENSCAFP00000050769
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX42,121,301 - 42,145,218 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000084649   ⟹   ENSCAFP00000048727
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX42,121,830 - 42,145,218 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000088480   ⟹   ENSCAFP00000043995
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX42,121,830 - 42,145,218 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000091238   ⟹   ENSCAFP00000057115
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX42,121,830 - 42,145,218 (-)Ensembl
RefSeq Acc Id: XM_005641338   ⟹   XP_005641395
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X42,121,646 - 42,138,205 (-)NCBI
Dog10K_Boxer_TashaX16,497,529 - 16,513,765 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038449960   ⟹   XP_038305888
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X42,258,246 - 42,281,569 (-)NCBI
RefSeq Acc Id: XM_038449961   ⟹   XP_038305889
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X42,258,246 - 42,274,492 (-)NCBI
RefSeq Acc Id: XM_038523421   ⟹   XP_038379349
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X42,244,505 - 42,267,815 (-)NCBI
RefSeq Acc Id: XM_038523422   ⟹   XP_038379350
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X42,244,505 - 42,260,739 (-)NCBI
RefSeq Acc Id: XM_038587378   ⟹   XP_038443306
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X42,326,953 - 42,350,247 (-)NCBI
RefSeq Acc Id: XM_038587379   ⟹   XP_038443307
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X42,326,953 - 42,343,190 (-)NCBI
RefSeq Acc Id: XM_038651891   ⟹   XP_038507819
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X42,232,713 - 42,255,999 (-)NCBI
RefSeq Acc Id: XM_038651892   ⟹   XP_038507820
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X42,232,713 - 42,248,947 (-)NCBI
RefSeq Acc Id: XM_548991   ⟹   XP_548991
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X42,121,646 - 42,145,327 (-)NCBI
Dog10K_Boxer_TashaX16,497,529 - 16,520,822 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_548991   ⟸   XM_548991
- Peptide Label: isoform X1
- UniProtKB: E2QWT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005641395   ⟸   XM_005641338
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCAFP00000043995   ⟸   ENSCAFT00000088480
RefSeq Acc Id: ENSCAFP00000048727   ⟸   ENSCAFT00000084649
RefSeq Acc Id: ENSCAFP00000053793   ⟸   ENSCAFT00000073586
RefSeq Acc Id: ENSCAFP00000023153   ⟸   ENSCAFT00000024952
RefSeq Acc Id: ENSCAFP00000023148   ⟸   ENSCAFT00000024947
RefSeq Acc Id: ENSCAFP00000057115   ⟸   ENSCAFT00000091238
RefSeq Acc Id: ENSCAFP00000050769   ⟸   ENSCAFT00000075664
RefSeq Acc Id: XP_038379349   ⟸   XM_038523421
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038379350   ⟸   XM_038523422
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038507819   ⟸   XM_038651891
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038507820   ⟸   XM_038651892
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038305888   ⟸   XM_038449960
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038305889   ⟸   XM_038449961
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038443306   ⟸   XM_038587378
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038443307   ⟸   XM_038587379
- Peptide Label: isoform X2

Promoters
RGD ID:13689319
Promoter ID:EPDNEW_C7387
Type:single initiation site
Name:GRIPAP1_1
Description:GRIP1 associated protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X42,145,213 - 42,145,273EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000015744 Ensembl
NCBI Gene GRIPAP1 ENTREZGENE
UniProt E2QWT9 ENTREZGENE
VGNC ID VGNC:41500 ENTREZGENE