OR4D9 (olfactory receptor family 4 subfamily D member 9) - Rat Genome Database

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Gene: OR4D9 (olfactory receptor family 4 subfamily D member 9) Canis lupus familiaris
Analyze
Symbol: OR4D9
Name: olfactory receptor family 4 subfamily D member 9
RGD ID: 12058733
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: cOR4Z2; cOR4Z2 olfactory receptor family 4 subfamily Z-like; LOC483449; olfactory receptor 4D9
RGD Orthologs
Human
Mouse
Rat
Bonobo
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11837,225,144 - 37,226,200 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1837,224,676 - 37,226,079 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1836,874,544 - 36,875,479 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01837,865,404 - 37,866,339 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1837,864,936 - 37,866,339 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11837,455,185 - 37,456,120 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01837,031,292 - 37,032,227 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01837,660,906 - 37,661,841 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14962662   PMID:22301074  


Genomics

Comparative Map Data
OR4D9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11837,225,144 - 37,226,200 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1837,224,676 - 37,226,079 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1836,874,544 - 36,875,479 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01837,865,404 - 37,866,339 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1837,864,936 - 37,866,339 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11837,455,185 - 37,456,120 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01837,031,292 - 37,032,227 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01837,660,906 - 37,661,841 (-)NCBIUU_Cfam_GSD_1.0
OR4D9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381159,511,539 - 59,520,703 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1159,511,368 - 59,520,703 (+)EnsemblGRCh38hg38GRCh38
GRCh371159,279,012 - 59,288,176 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361159,038,962 - 59,039,906 (+)NCBINCBI36Build 36hg18NCBI36
Celera1156,645,048 - 56,645,992 (+)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1155,630,217 - 55,631,161 (+)NCBIHuRef
CHM1_11159,148,162 - 59,149,106 (+)NCBICHM1_1
T2T-CHM13v2.01159,462,418 - 59,471,582 (+)NCBIT2T-CHM13v2.0
Or4d10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391912,051,059 - 12,051,994 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1912,050,598 - 12,055,095 (-)EnsemblGRCm39 Ensembl
GRCm381912,073,695 - 12,074,630 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1912,073,234 - 12,077,731 (-)EnsemblGRCm38mm10GRCm38
MGSCv371912,148,185 - 12,149,120 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361912,140,740 - 12,141,675 (-)NCBIMGSCv36mm8
Celera1912,771,072 - 12,772,007 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map198.59NCBI
Or4d10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81218,422,033 - 218,422,968 (-)NCBIGRCr8
mRatBN7.21208,997,300 - 208,998,235 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1208,996,643 - 209,001,372 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1217,371,960 - 217,372,895 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01224,348,157 - 224,349,092 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01217,126,396 - 217,127,331 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01228,504,037 - 228,541,080 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1228,504,145 - 228,505,080 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01235,568,408 - 235,569,343 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41214,920,362 - 214,921,297 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11215,078,791 - 215,079,727 (-)NCBI
Celera1206,463,455 - 206,464,390 (-)NCBICelera
Cytogenetic Map1q43NCBI
LOC100973708
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2960,643,705 - 60,652,969 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11161,686,836 - 61,696,086 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01154,741,306 - 54,742,254 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11158,192,150 - 58,193,094 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1158,192,150 - 58,193,094 (+)Ensemblpanpan1.1panPan2
LOC110258207
(Sus scrofa - pig)		 No map positions available.
LOC103234916
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1114,087,060 - 14,122,985 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl114,087,468 - 14,088,409 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038111,414,895 - 111,415,868 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in OR4D9
4 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low
Below cutoff 3 1 13 2 5 2 3 6 2 8 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000038470   ⟹   ENSCAFP00000034195
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1837,224,676 - 37,226,079 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845030290   ⟹   ENSCAFP00845023752
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1837,864,936 - 37,866,339 (-)Ensembl
RefSeq Acc Id: NM_001388576   ⟹   NP_001375505
RefSeq Status: INFERRED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1836,874,544 - 36,875,479 (-)NCBI
ROS_Cfam_1.01837,865,404 - 37,866,339 (-)NCBI
UMICH_Zoey_3.11837,455,185 - 37,456,120 (-)NCBI
UNSW_CanFamBas_1.01837,031,292 - 37,032,227 (-)NCBI
UU_Cfam_GSD_1.01837,660,906 - 37,661,841 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001375505 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000034195.3
  ENSCAFP00030029275.1
  ENSCAFP00040034828.1
  ENSCAFP00845023752.1
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000034195   ⟸   ENSCAFT00000038470
RefSeq Acc Id: NP_001375505   ⟸   NM_001388576
- UniProtKB: A0A8C0JKI4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845023752   ⟸   ENSCAFT00845030290
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000029808 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030018214 UniProtKB/TrEMBL
  ENSCAFG00040021499 UniProtKB/TrEMBL
  ENSCAFG00845017124 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000038470.4 UniProtKB/TrEMBL
  ENSCAFT00030033549.1 UniProtKB/TrEMBL
  ENSCAFT00040039904.1 UniProtKB/TrEMBL
  ENSCAFT00845030290.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene LOC483449 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 4D9 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C0JKI4 ENTREZGENE
  A0A8C0NT06_CANLF UniProtKB/TrEMBL
  A0A8I3P9W0_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:84799 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-01-21 OR4D9  olfactory receptor family 4 subfamily D member 9  LOC483449  cOR4Z2 olfactory receptor family 4 subfamily Z-like  Symbol and/or name change 5135510 APPROVED