CAVIN3 (caveolae associated protein 3) - Rat Genome Database

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Gene: CAVIN3 (caveolae associated protein 3) Canis lupus familiaris
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Symbol: CAVIN3
Name: caveolae associated protein 3
RGD ID: 12058590
Description: ENCODES a protein that exhibits protein kinase C binding (ortholog); INVOLVED IN circadian regulation of gene expression (ortholog); cortical actin cytoskeleton organization (ortholog); negative regulation of fermentation (ortholog); ASSOCIATED WITH genetic disease (ortholog); neuronal ceroid lipofuscinosis (ortholog); FOUND IN caveola (inferred); cytoplasm (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: caveolae-associated protein 3; PRKCDBP; protein kinase C delta-binding protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12129,661,235 - 29,663,393 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2129,661,980 - 29,716,313 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2129,363,357 - 29,365,498 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02130,487,609 - 30,489,721 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2130,485,318 - 30,489,996 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12129,808,695 - 29,810,832 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02129,974,518 - 29,976,636 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02130,169,413 - 30,171,524 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CAVIN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12129,661,235 - 29,663,393 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2129,661,980 - 29,716,313 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2129,363,357 - 29,365,498 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02130,487,609 - 30,489,721 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2130,485,318 - 30,489,996 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12129,808,695 - 29,810,832 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02129,974,518 - 29,976,636 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02130,169,413 - 30,171,524 (-)NCBIUU_Cfam_GSD_1.0
CAVIN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38116,318,946 - 6,320,501 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl116,318,946 - 6,320,532 (-)EnsemblGRCh38hg38GRCh38
GRCh37116,340,176 - 6,341,731 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36116,296,752 - 6,298,316 (-)NCBINCBI36Build 36hg18NCBI36
Build 34116,296,753 - 6,298,316NCBI
Celera116,459,218 - 6,460,782 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef116,000,077 - 6,001,641 (-)NCBIHuRef
CHM1_1116,339,390 - 6,340,954 (-)NCBICHM1_1
T2T-CHM13v2.0116,377,369 - 6,378,924 (-)NCBIT2T-CHM13v2.0
Cavin3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397105,129,823 - 105,131,404 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7105,129,290 - 105,131,507 (-)EnsemblGRCm39 Ensembl
GRCm387105,480,616 - 105,482,197 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7105,480,083 - 105,482,300 (-)EnsemblGRCm38mm10GRCm38
MGSCv377112,629,130 - 112,630,711 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367105,354,437 - 105,356,018 (-)NCBIMGSCv36mm8
Celera7105,752,686 - 105,754,267 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map755.87NCBI
Cavin3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81169,238,384 - 169,239,973 (-)NCBIGRCr8
mRatBN7.21159,826,549 - 159,828,138 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1159,826,549 - 159,828,161 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1167,848,411 - 167,849,999 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01175,034,401 - 175,035,989 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01167,930,386 - 167,931,974 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01170,317,099 - 170,318,688 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1170,317,113 - 170,318,935 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01177,323,467 - 177,325,056 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41163,212,922 - 163,214,511 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11163,308,398 - 163,309,988 (-)NCBI
Celera1157,761,026 - 157,762,615 (-)NCBICelera
Cytogenetic Map1q32NCBI
Cavin3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541422,050,109 - 22,054,374 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541422,052,885 - 22,054,672 (-)NCBIChiLan1.0ChiLan1.0
CAVIN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v298,756,518 - 8,759,329 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1118,720,377 - 8,722,903 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0116,451,364 - 6,453,206 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1116,133,656 - 6,135,468 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl116,133,656 - 6,135,485 (-)Ensemblpanpan1.1panPan2
Cavin3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494756,286,605 - 56,288,167 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936842387,551 - 388,882 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936842387,320 - 388,877 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAVIN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl93,378,207 - 3,379,847 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.193,378,144 - 3,379,851 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.293,991,701 - 3,993,411 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CAVIN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1158,504,726 - 58,507,200 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl158,504,782 - 58,507,438 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038156,332,864 - 156,334,561 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cavin3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248177,836,557 - 7,838,718 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248177,836,671 - 7,838,590 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CAVIN3
40 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 7 10 6
Low 1
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000010340   ⟹   ENSCAFP00000009586
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2129,661,980 - 29,716,313 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845012920   ⟹   ENSCAFP00845010070
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2130,485,318 - 30,489,996 (-)Ensembl
RefSeq Acc Id: XM_038430350   ⟹   XP_038286278
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02130,487,609 - 30,489,721 (-)NCBI
RefSeq Acc Id: XM_038505688   ⟹   XP_038361616
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12129,808,695 - 29,810,832 (-)NCBI
RefSeq Acc Id: XM_038568885   ⟹   XP_038424813
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02130,169,413 - 30,171,524 (-)NCBI
RefSeq Acc Id: XM_038633052   ⟹   XP_038488980
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02129,974,518 - 29,976,636 (-)NCBI
RefSeq Acc Id: XM_534035   ⟹   XP_534035
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12129,661,235 - 29,663,393 (-)NCBI
Dog10K_Boxer_Tasha2129,363,357 - 29,365,498 (-)NCBI
Sequence:
RefSeq Acc Id: XP_534035   ⟸   XM_534035
- UniProtKB: A0A8P0PPG9 (UniProtKB/TrEMBL),   A0A8C0MYR2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000009586   ⟸   ENSCAFT00000010340
RefSeq Acc Id: XP_038361616   ⟸   XM_038505688
RefSeq Acc Id: XP_038488980   ⟸   XM_038633052
RefSeq Acc Id: XP_038286278   ⟸   XM_038430350
- UniProtKB: A0A8C0K9A8 (UniProtKB/TrEMBL),   A0A8C0T6M0 (UniProtKB/TrEMBL),   A0A8C0MYR2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038424813   ⟸   XM_038568885
- UniProtKB: A0A8C0MYR2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845010070   ⟸   ENSCAFT00845012920

Promoters
RGD ID:13687220
Promoter ID:EPDNEW_C5288
Type:multiple initiation site
Name:CAVIN3_1
Description:caveolae associated protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12129,663,317 - 29,663,377EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000006404 Ensembl
  ENSCAFG00000056344 UniProtKB/TrEMBL
  ENSCAFG00030009304 UniProtKB/TrEMBL
  ENSCAFG00040018842 UniProtKB/TrEMBL
  ENSCAFG00845007318 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000105739.1 UniProtKB/TrEMBL
  ENSCAFT00030017207.1 UniProtKB/TrEMBL
  ENSCAFT00040034839.1 UniProtKB/TrEMBL
  ENSCAFT00845012920.1 UniProtKB/TrEMBL
InterPro Cavin_fam UniProtKB/TrEMBL
NCBI Gene PRKCDBP ENTREZGENE
PANTHER PTHR15240 UniProtKB/TrEMBL
  PTHR15240:SF2 UniProtKB/TrEMBL
Pfam PTRF_SDPR UniProtKB/TrEMBL
UniProt A0A8C0K9A8 ENTREZGENE
  A0A8C0MYR2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T6M0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N1D8_CANLF UniProtKB/TrEMBL
  A0A8P0PPG9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38755 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-28 CAVIN3  caveolae associated protein 3  PRKCDBP  protein kinase C delta binding protein  Symbol and/or name change 5135510 APPROVED