PAX7 (paired box 7) - Rat Genome Database

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Gene: PAX7 (paired box 7) Canis lupus familiaris
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Symbol: PAX7
Name: paired box 7
RGD ID: 12058245
Description: ENCODES a protein that exhibits sequence-specific DNA binding (ortholog); INVOLVED IN cartilage development (ortholog); chromatin remodeling (ortholog); dorsal/ventral neural tube patterning (ortholog); ASSOCIATED WITH alveolar rhabdomyosarcoma (ortholog); chromosome 1p36 deletion syndrome (ortholog); congenital myopathy 19 (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: paired box gene 7; paired box protein Pax-7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1279,813,835 - 79,952,490 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl279,815,748 - 79,915,003 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha276,352,286 - 76,432,189 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0280,440,906 - 80,541,477 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl280,442,818 - 80,541,487 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1277,229,920 - 77,297,584 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0278,231,829 - 78,311,699 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0279,280,989 - 79,381,745 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:25956343   PMID:30032202  


Genomics

Comparative Map Data
PAX7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1279,813,835 - 79,952,490 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl279,815,748 - 79,915,003 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha276,352,286 - 76,432,189 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0280,440,906 - 80,541,477 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl280,442,818 - 80,541,487 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1277,229,920 - 77,297,584 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0278,231,829 - 78,311,699 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0279,280,989 - 79,381,745 (-)NCBIUU_Cfam_GSD_1.0
PAX7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38118,630,846 - 18,748,866 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl118,630,846 - 18,748,866 (+)EnsemblGRCh38hg38GRCh38
GRCh37118,957,340 - 19,075,360 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36118,830,087 - 18,935,219 (+)NCBINCBI36Build 36hg18NCBI36
Celera117,287,191 - 17,405,157 (+)NCBICelera
Cytogenetic Map1p36.13NCBI
HuRef117,203,638 - 17,321,488 (+)NCBIHuRef
CHM1_1119,066,628 - 19,184,492 (+)NCBICHM1_1
T2T-CHM13v2.0118,450,908 - 18,568,930 (+)NCBIT2T-CHM13v2.0
Pax7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394139,464,357 - 139,560,841 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4139,464,373 - 139,560,839 (-)EnsemblGRCm39 Ensembl
GRCm384139,737,059 - 139,833,530 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4139,737,062 - 139,833,528 (-)EnsemblGRCm38mm10GRCm38
MGSCv374139,293,996 - 139,388,883 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364139,010,157 - 139,105,044 (-)NCBIMGSCv36mm8
Celera4141,530,711 - 141,629,332 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map470.83NCBI
Pax7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85157,279,623 - 157,381,188 (-)NCBIGRCr8
mRatBN7.25151,996,368 - 152,098,023 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5151,999,092 - 152,097,979 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5154,697,987 - 154,795,617 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05156,472,367 - 156,570,000 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05156,453,975 - 156,551,269 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05158,211,001 - 158,313,510 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5158,214,616 - 158,313,426 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05161,944,011 - 162,045,053 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45158,547,765 - 158,648,053 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5150,374,628 - 150,471,191 (-)NCBICelera
Cytogenetic Map5q36NCBI
Pax7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955527474,403 - 574,689 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955527474,450 - 573,869 (-)NCBIChiLan1.0ChiLan1.0
PAX7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21208,370,499 - 208,484,647 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11207,487,082 - 207,601,269 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0117,589,513 - 17,707,442 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1118,639,641 - 18,756,952 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl118,639,641 - 18,756,952 (+)Ensemblpanpan1.1panPan2
Pax7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505839,220,382 - 39,310,785 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364745,045,284 - 5,131,859 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364745,045,284 - 5,131,859 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAX7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl677,161,097 - 77,267,415 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1677,160,827 - 77,268,626 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PAX7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120113,810,646 - 113,929,136 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20113,823,392 - 113,928,548 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660332,225,692 - 2,345,698 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pax7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247643,853,055 - 3,947,521 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247643,853,055 - 3,951,182 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PAX7
2984 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system musculoskeletal system nervous system reproductive system
High
Medium
Low 4 4
Below cutoff 2 6 2 7

Sequence


RefSeq Acc Id: ENSCAFT00000024687   ⟹   ENSCAFP00000022903
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl279,815,748 - 79,915,003 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845006657   ⟹   ENSCAFP00845005296
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl280,442,818 - 80,541,487 (-)Ensembl
RefSeq Acc Id: XM_038454897   ⟹   XP_038310825
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha276,352,286 - 76,432,189 (-)NCBI
RefSeq Acc Id: XM_038471153   ⟹   XP_038327081
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1277,229,920 - 77,297,584 (-)NCBI
RefSeq Acc Id: XM_038529597   ⟹   XP_038385525
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0279,280,989 - 79,381,745 (-)NCBI
RefSeq Acc Id: XM_038593831   ⟹   XP_038449759
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0278,231,829 - 78,311,699 (-)NCBI
RefSeq Acc Id: XM_038657911   ⟹   XP_038513839
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0280,440,906 - 80,541,477 (-)NCBI
RefSeq Acc Id: ENSCAFP00000022903   ⟸   ENSCAFT00000024687
RefSeq Acc Id: XP_038327081   ⟸   XM_038471153
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038449759   ⟸   XM_038593831
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038513839   ⟸   XM_038657911
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038310825   ⟸   XM_038454897
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038385525   ⟸   XM_038529597
- Peptide Label: isoform X4
RefSeq Acc Id: ENSCAFP00845005296   ⟸   ENSCAFT00845006657
Protein Domains
Homeobox   OAR   Paired


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000015539 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030012137 UniProtKB/TrEMBL
  ENSCAFG00040001431 UniProtKB/TrEMBL
  ENSCAFG00845003729 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000024687.5 UniProtKB/TrEMBL
  ENSCAFT00030022489.1 UniProtKB/TrEMBL
  ENSCAFT00040002709.1 UniProtKB/TrEMBL
  ENSCAFT00845006657.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  OAR_dom UniProtKB/TrEMBL
  PAIRED_DNA-bd_dom UniProtKB/TrEMBL
  Paired_dom UniProtKB/TrEMBL
  Pax7_C UniProtKB/TrEMBL
  PAX_fam UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene PAX7 ENTREZGENE
PANTHER PAIRED BOX PROTEIN PAX-7 UniProtKB/TrEMBL
  PTHR45636 UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/TrEMBL
  PAX UniProtKB/TrEMBL
  Pax7 UniProtKB/TrEMBL
PRINTS PAIREDBOX UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
  OAR UniProtKB/TrEMBL
  PAIRED_1 UniProtKB/TrEMBL
  PAIRED_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
  PAX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A8C0N058_CANLF UniProtKB/TrEMBL
  A0A8I3MTS8_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:52224 ENTREZGENE