PBX3 (PBX homeobox 3) - Rat Genome Database

Name: PBX3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: PBX3 (PBX homeobox 3) Canis lupus familiaris

Analyze

Symbol:

PBX3

Name:

PBX homeobox 3

RGD ID:

12057390

Description:

ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity (inferred); INVOLVED IN adult locomotory behavior (ortholog); dorsal spinal cord development (ortholog); neuron development (ortholog); ASSOCIATED WITH Congenital Heart Defects, Multiple Types (ortholog); esophagus squamous cell carcinoma (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred); transcription regulator complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC106559327; pre-B-cell leukemia transcription factor 3; uncharacterized LOC106559327

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PBX3 (PBX homeobox 3)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Pbx3 (pre B cell leukemia homeobox 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Pbx3 (PBX homeobox 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pbx3 (PBX homeobox 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PBX3 (PBX homeobox 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pbx3 (PBX homeobox 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PBX3 (PBX homeobox 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PBX3 (PBX homeobox 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pbx3 (PBX homeobox 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	57,198,531 - 57,429,820 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	57,199,812 - 57,429,811 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	56,399,623 - 56,630,129 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	58,119,354 - 58,350,418 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	58,119,626 - 58,337,153 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	56,877,592 - 57,108,518 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	57,193,844 - 57,424,560 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	57,284,917 - 57,516,098 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Congenital Heart Defects, Multiple Types (ISO)

esophagus squamous cell carcinoma (ISO)

genetic disease (ISO)

X-linked cone-rod dystrophy 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adult locomotory behavior (IEA,ISO)

animal organ morphogenesis (IEA)

brain development (IEA)

dorsal spinal cord development (IEA,ISO)

embryonic organ development (IEA)

eye development (IEA)

neuron development (IEA,ISO)

positive regulation of transcription by RNA polymerase II (IEA)

regulation of DNA-templated transcription (IEA)

regulation of respiratory gaseous exchange by nervous system process (IEA,ISO)

regulation of transcription by RNA polymerase II (IEA)

respiratory gaseous exchange by respiratory system (IEA,ISO)

Cellular Component

nucleus (IEA)

transcription regulator complex (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

sequence-specific DNA binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

PBX3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	57,198,531 - 57,429,820 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	57,199,812 - 57,429,811 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	56,399,623 - 56,630,129 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	58,119,354 - 58,350,418 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	58,119,626 - 58,337,153 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	56,877,592 - 57,108,518 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	57,193,844 - 57,424,560 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	57,284,917 - 57,516,098 (-)	NCBI		UU_Cfam_GSD_1.0

PBX3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	125,747,373 - 125,967,377 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	125,747,345 - 125,967,377 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	128,509,652 - 128,729,656 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	127,549,487 - 127,769,477 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	125,589,286 - 125,808,921	NCBI
Celera	9	99,158,741 - 99,384,104 (+)	NCBI		Celera
Cytogenetic Map	9	q33.3	NCBI
HuRef	9	98,122,353 - 98,347,071 (+)	NCBI		HuRef
CHM1_1	9	128,660,292 - 128,880,307 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	137,947,324 - 138,172,756 (+)	NCBI		T2T-CHM13v2.0

Pbx3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	34,061,469 - 34,264,168 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	34,061,469 - 34,263,154 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	34,171,457 - 34,372,045 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	34,171,457 - 34,373,142 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	34,027,429 - 34,227,556 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	33,993,918 - 34,194,045 (-)	NCBI		MGSCv36	mm8
Celera	2	33,869,694 - 34,069,148 (-)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	22.84	NCBI

Pbx3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	37,886,241 - 38,079,956 (-)	NCBI		GRCr8
mRatBN7.2	3	17,488,691 - 17,682,412 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	17,488,693 - 17,682,791 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	20,557,559 - 20,750,825 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	29,142,610 - 29,335,881 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	27,395,628 - 27,589,698 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	13,241,031 - 13,436,084 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	13,182,024 - 13,525,983 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	18,569,183 - 18,763,413 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	13,200,261 - 13,405,859 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	13,096,449 - 13,311,087 (-)	NCBI
Celera	3	12,211,343 - 12,404,425 (-)	NCBI		Celera
Cytogenetic Map	3	p11	NCBI

Pbx3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	2,419,029 - 2,627,607 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	2,419,081 - 2,624,299 (-)	NCBI	ChiLan1.0	ChiLan1.0

PBX3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	13,387,710 - 13,609,960 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	13,390,056 - 13,612,138 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	96,867,140 - 97,089,205 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	125,379,110 - 125,599,634 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	125,379,489 - 125,598,178 (+)	Ensembl	panpan1.1		panPan2

Pbx3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	194,010,931 - 194,218,090 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	13,779,454 - 13,987,722 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	13,779,999 - 13,986,617 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PBX3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	266,382,640 - 266,610,640 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	266,383,311 - 266,610,646 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	300,208,202 - 300,433,688 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PBX3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	12,174,407 - 12,400,184 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666079	3,721,016 - 3,948,699 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pbx3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	9,352,563 - 9,553,984 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	9,352,759 - 9,555,211 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in PBX3
1772 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	5	5	17	1	6	1	6		6		10	6
Low			5	5		5		6	6	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005625446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022423815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022423816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038487416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038487417	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038487418	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038487419	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038549344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038549345	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038549346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038549347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038613294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038613295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038613296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038613297	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038619641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038619658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038678579	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038678580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038678581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038678582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000032127 ⟹ ENSCAFP00000029917

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	9	57,199,812 - 57,429,811 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000069060 ⟹ ENSCAFP00000055528

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	9	57,204,963 - 57,254,414 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845015030 ⟹ ENSCAFP00845011657

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	9	58,119,626 - 58,337,153 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845015084 ⟹ ENSCAFP00845011707

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	9	58,119,626 - 58,337,153 (-)	Ensembl

RefSeq Acc Id:

XM_005625446 ⟹ XP_005625503

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	57,198,531 - 57,415,541 (-)	NCBI
Dog10K_Boxer_Tasha	9	56,399,623 - 56,615,840 (-)	NCBI

Sequence:

show sequence

GCCGCGCTCGCGGGAAGTGCAACTTTCTCCCCCCGCCCGGAGTCGCGGCGCCGGGCGTCCCTCG
GCGGCCGGACGGCCTCGCGGAAACATGCTCTCAACTGTCACAGAATGAAACCTGCGCTCTTCAG
CGTCCTGTGTGAGATCAAAGAGAAAACAGGTCTCAGCATCAGAGGAGCCCAGGAGGAGGACCCT
CCCGATCCCCAGCTAATGAGACTGGACAATATGCTTTTGGCAGAAGGGGTTTCAGGTCCTGAGA
AAGGTGGGGGATCGGCGGCAGCAGCTGCAGCCGCGGCAGCCTCTGGAGGTTCTTCAGATAACTC
TATTGAACACTCAGATTACAGAGCCAAATTGACCCAGATCAGACAAATCTATCACACAGAACTG
GAGAAATATGAACAGGCATGTAATGAATTCACCACACACGTGATGAACCTTCTCCGAGAGCAGA
GTAGAACACGTCCCATTTCCCCAAAAGAGATTGAAAGAATGGTGGGCATCATCCATCGAAAATT
TAGTTCCATTCAGATGCAGCTCAAACAAAGCACTTGTGAAGCAGTTATGATTTTAAGATCAAGA
TTCCTTGATGCCAGACGGAAAAGGCGTAACTTCAGTAAACAGGCCACAGAAATCTTGAATGAAT
ATTTTTACTCACACCTCAGTAACCCCTACCCCAGTGAAGAAGCCAAAGAAGAGCTGGCCAAGAA
ATGCAGCATCACAGTGTCACAGGTATCCAACTGGTTTGGCAACAAACGAATCAGGTACAAGAAG
AATATCGGCAAGTTTCAGGAAGAAGCCAACCTCTATGCCGCAAAGACAGCCGTGACGGCCGCGC
ATGCAGTAGCTGCAGCTGTGCAGAACAACCAGACCAATTCGCCCACCACACCAAATTCTGGTTC
TTCTGGTTCTTTTAACCTCCCAAATTCTGGGGACATGTTCATGAACATGCAGAGTCTGAATGGG
GATTCTTACCAAGGGTCCCAAGTCGGAGCCAATGTGCAATCACAGGTGGATACCCTCCGTCATG
TTATCAATCAGACGGGAGGCTACAGTGATGGCCTTGGAGGAAACTCACTGTACAGTCCACATAA
TTTAAATGCTAATGGAGGCTGGCAGGACGCAACAACTCCATCTTCGGTGACTTCCCCGACAGAA
GGCCCAGGAAGTGTGCACTCTGATACCTCTAACTGATCTCTGGCAACACTTTTCCCTGAGCTGA
CATGCCTTGATACGTGCATTCAGAGCAACAGGAGGAAAAGGAAAGAGTTTTTGTAGCCCACCAT
TTACAGCTTTACTGTAATACCTTGTCTTATTAGAGAACTTGGTAAATCAGTTTTTTAAGGAATC
ATAATCATTTGTATTTATACTTAAAAACACATAATGTTAAAAAAGCACTTTATCCAATTAGGCC
AAGATTTAACATTGTTGACAGTCCTATAGCTATTTTATCATAATTTATTATCAATATTTTACAT
TAATTGTTTCACAGTTGCCAATGACTTGGCCTTAAGGGTAAAAAGTACAATATATGCTGAACCT
CAATCGTTAAAGCAGATGCAAAGATTCACCTCACCTAAATTGAATTTCTTGCATATTTTCATCA
CGGACTTTGTCTTTCTTTCATATCACTAATGGGGTTGAAATGAAGGAGCTGTTTGGCTATCTCT
GTTAACGATGGTTTAAGAATCTTCCTGGTCACGTTTGTGTTTCGATCTCTTATGTTATAATTAG
ATCATAGACTGGTAGCATCTTTTCTCTCTCTGGAAGCACCAGTGCCCAGAGTCGGCTCGGTAAT
TAAATTATGGATCCAGATTGTTCTGAGAGATGAAGACACTTGCTGCTGATAAGAGGAGAACACG
AGATCCGTCTGGGGTTGTACGGTGTGCGCTGGGTGCTGCACGGACTTGTCAAGGTTTGCTATGT
CCTCTGGGCATCCACAAAGGCCCTGCTCTCTGGAGTGTTGTATATAGTGTAGCAAAAGAGTATT
TATACATCTCACCAATCAAAACACAGCTTTATTACCTCATGCGAACTCATACAAACCAATAGAA
TTTCAACATGTTCTGTAGCTTAGAGTGCTCACTTACTACCTCTGAACAATACTCACGCTGTAGT
TTGTCTCTTTCTTACCTTTTTGCATCTTGTAATTAACTCTTTGTTTCCTTCATAAAATGTAATG
TACATTGTAATCTTTTAAAAGAAAAATCAGGGTTGCATTTGCAACTTTTAAAAAACCGAGAGTG
GAAACATTGGGTCTTCAATGAACACAGGATCAGTAGAACTGTTGTAAATACTGAGAAAGCATTT
TGAATGTTCTTCATCTTATTACTAATCCATGCAAAAAAGAAAAAAAAAAAAAAGCGGCGCCGAT
TGTGATGCATTCAAAGTCCAGTATTCGGTACTGTATATTTCACCCTGTGTGCTGGGGCCCCCTC
TCCTTCCTCTCTTTTTGTATTGTATGCGATTCTGAAACTGATTGAGTCATGAAAATAATTTGTG
GCGGTGATTCTAATGTATTAAAACTGTTTCGTGTTCCTTTCTAACTGGATTACACCCTGGATTG
AAAAAGTCTTCCTCGTGGTAGCTCTATGTAGTTTCAAACATGAATAAACTTTTTGCTTTCATGA
TTAAA

hide sequence

RefSeq Acc Id:

XM_022423815 ⟹ XP_022279523

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	57,198,531 - 57,429,820 (-)	NCBI
Dog10K_Boxer_Tasha	9	56,399,623 - 56,630,129 (-)	NCBI

Sequence:

show sequence

CTTCTCAGAATGAAAATGCTGTTTCCTTTTGTGGATCACTGCTTCCCAGAAATCCTATTGCCCC
CACCTACCAAAGAAGACCTCTTGGCTGTTGATTCAAGGAAACATGCTCTCAACTGTCACAGAAT
GAAACCTGCGCTCTTCAGCGTCCTGTGTGAGATCAAAGAGAAAACAGGTCTCAGCATCAGAGGA
GCCCAGGAGGAGGACCCTCCCGATCCCCAGCTAATGAGACTGGACAATATGCTTTTGGCAGAAG
GGGTTTCAGGTCCTGAGAAAGGTGGGGGATCGGCGGCAGCAGCTGCAGCCGCGGCAGCCTCTGG
AGGTTCTTCAGATAACTCTATTGAACACTCAGATTACAGAGCCAAATTGACCCAGATCAGACAA
ATCTATCACACAGAACTGGAGAAATATGAACAGGCATGTAATGAATTCACCACACACGTGATGA
ACCTTCTCCGAGAGCAGAGTAGAACACGTCCCATTTCCCCAAAAGAGATTGAAAGAATGGTGGG
CATCATCCATCGAAAATTTAGTTCCATTCAGATGCAGCTCAAACAAAGCACTTGTGAAGCAGTT
ATGATTTTAAGATCAAGATTCCTTGATGCCAGACGGAAAAGGCGTAACTTCAGTAAACAGGCCA
CAGAAATCTTGAATGAATATTTTTACTCACACCTCAGTAACCCCTACCCCAGTGAAGAAGCCAA
AGAAGAGCTGGCCAAGAAATGCAGCATCACAGTGTCACAGGTATCCAACTGGTTTGGCAACAAA
CGAATCAGGTACAAGAAGAATATCGGCAAGTTTCAGGAAGAAGCCAACCTCTATGCCGCAAAGA
CAGCCGTGACGGCCGCGCATGCAGTAGCTGCAGCTGTGCAGAACAACCAGACCAATTCGCCCAC
CACACCAAATTCTGGTTCTTCTGGTTCTTTTAACCTCCCAAATTCTGGGGACATGTTCATGAAC
ATGCAGAGTCTGAATGGGGATTCTTACCAAGGGTCCCAAGTCGGAGCCAATGTGCAATCACAGG
TGGATACCCTCCGTCATGTTATCAATCAGACGGGAGGCTACAGTGATGGCCTTGGAGGAAACTC
ACTGTACAGTCCACATAATTTAAATGCTAATGGAGGCTGGCAGGACGCAACAACTCCATCTTCG
GTGACTTCCCCGACAGAAGGCCCAGGAAGTGTGCACTCTGATACCTCTAACTGATCTCTGGCAA
CACTTTTCCCTGAGCTGACATGCCTTGATACGTGCATTCAGAGCAACAGGAGGAAAAGGAAAGA
GTTTTTGTAGCCCACCATTTACAGCTTTACTGTAATACCTTGTCTTATTAGAGAACTTGGTAAA
TCAGTTTTTTAAGGAATCATAATCATTTGTATTTATACTTAAAAACACATAATGTTAAAAAAGC
ACTTTATCCAATTAGGCCAAGATTTAACATTGTTGACAGTCCTATAGCTATTTTATCATAATTT
ATTATCAATATTTTACATTAATTGTTTCACAGTTGCCAATGACTTGGCCTTAAGGGTAAAAAGT
ACAATATATGCTGAACCTCAATCGTTAAAGCAGATGCAAAGATTCACCTCACCTAAATTGAATT
TCTTGCATATTTTCATCACGGACTTTGTCTTTCTTTCATATCACTAATGGGGTTGAAATGAAGG
AGCTGTTTGGCTATCTCTGTTAACGATGGTTTAAGAATCTTCCTGGTCACGTTTGTGTTTCGAT
CTCTTATGTTATAATTAGATCATAGACTGGTAGCATCTTTTCTCTCTCTGGAAGCACCAGTGCC
CAGAGTCGGCTCGGTAATTAAATTATGGATCCAGATTGTTCTGAGAGATGAAGACACTTGCTGC
TGATAAGAGGAGAACACGAGATCCGTCTGGGGTTGTACGGTGTGCGCTGGGTGCTGCACGGACT
TGTCAAGGTTTGCTATGTCCTCTGGGCATCCACAAAGGCCCTGCTCTCTGGAGTGTTGTATATA
GTGTAGCAAAAGAGTATTTATACATCTCACCAATCAAAACACAGCTTTATTACCTCATGCGAAC
TCATACAAACCAATAGAATTTCAACATGTTCTGTAGCTTAGAGTGCTCACTTACTACCTCTGAA
CAATACTCACGCTGTAGTTTGTCTCTTTCTTACCTTTTTGCATCTTGTAATTAACTCTTTGTTT
CCTTCATAAAATGTAATGTACATTGTAATCTTTTAAAAGAAAAATCAGGGTTGCATTTGCAACT
TTTAAAAAACCGAGAGTGGAAACATTGGGTCTTCAATGAACACAGGATCAGTAGAACTGTTGTA
AATACTGAGAAAGCATTTTGAATGTTCTTCATCTTATTACTAATCCATGCAAAAAAGAAAAAAA
AAAAAAAGCGGCGCCGATTGTGATGCATTCAAAGTCCAGTATTCGGTACTGTATATTTCACCCT
GTGTGCTGGGGCCCCCTCTCCTTCCTCTCTTTTTGTATTGTATGCGATTCTGAAACTGATTGAG
TCATGAAAATAATTTGTGGCGGTGATTCTAATGTATTAAAACTGTTTCGTGTTCCTTTCTAACT
GGATTACACCCTGGATTGAAAAAGTCTTCCTCGTGGTAGCTCTATGTAGTTTCAAACATGAATA
AACTTTTTGCTTTCATGATTAAA

hide sequence

RefSeq Acc Id:

XM_038487416 ⟹ XP_038343344

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	56,877,592 - 57,094,834 (-)	NCBI

RefSeq Acc Id:

XM_038487417 ⟹ XP_038343345

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	56,877,592 - 57,108,518 (-)	NCBI

RefSeq Acc Id:

XM_038487418 ⟹ XP_038343346

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	56,877,592 - 57,094,241 (-)	NCBI

RefSeq Acc Id:

XM_038487419 ⟹ XP_038343347

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	56,877,592 - 57,094,744 (-)	NCBI

RefSeq Acc Id:

XM_038549344 ⟹ XP_038405272

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	57,284,917 - 57,502,332 (-)	NCBI

RefSeq Acc Id:

XM_038549345 ⟹ XP_038405273

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	57,284,917 - 57,501,771 (-)	NCBI

RefSeq Acc Id:

XM_038549346 ⟹ XP_038405274

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	57,284,917 - 57,502,271 (-)	NCBI

RefSeq Acc Id:

XM_038549347 ⟹ XP_038405275

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	57,284,917 - 57,516,098 (-)	NCBI

RefSeq Acc Id:

XM_038613294 ⟹ XP_038469222

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	57,193,844 - 57,410,935 (-)	NCBI

RefSeq Acc Id:

XM_038613295 ⟹ XP_038469223

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	57,193,844 - 57,424,560 (-)	NCBI

RefSeq Acc Id:

XM_038613296 ⟹ XP_038469224

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	57,193,844 - 57,410,374 (-)	NCBI

RefSeq Acc Id:

XM_038613297 ⟹ XP_038469225

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	57,193,844 - 57,410,874 (-)	NCBI

RefSeq Acc Id:

XM_038619641 ⟹ XP_038475569

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	9	56,399,623 - 56,616,432 (-)	NCBI

RefSeq Acc Id:

XM_038619658 ⟹ XP_038475586

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	9	56,399,623 - 56,616,340 (-)	NCBI

RefSeq Acc Id:

XM_038678579 ⟹ XP_038534507

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	58,119,354 - 58,336,712 (-)	NCBI

RefSeq Acc Id:

XM_038678580 ⟹ XP_038534508

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	58,119,354 - 58,350,418 (-)	NCBI

RefSeq Acc Id:

XM_038678581 ⟹ XP_038534509

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	58,119,354 - 58,336,117 (-)	NCBI

RefSeq Acc Id:

XM_038678582 ⟹ XP_038534510

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	58,119,354 - 58,336,617 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005625503	(Get FASTA)	NCBI Sequence Viewer
	XP_022279523	(Get FASTA)	NCBI Sequence Viewer
	XP_038343344	(Get FASTA)	NCBI Sequence Viewer
	XP_038343345	(Get FASTA)	NCBI Sequence Viewer
	XP_038343346	(Get FASTA)	NCBI Sequence Viewer
	XP_038343347	(Get FASTA)	NCBI Sequence Viewer
	XP_038405272	(Get FASTA)	NCBI Sequence Viewer
	XP_038405273	(Get FASTA)	NCBI Sequence Viewer
	XP_038405274	(Get FASTA)	NCBI Sequence Viewer
	XP_038405275	(Get FASTA)	NCBI Sequence Viewer
	XP_038469222	(Get FASTA)	NCBI Sequence Viewer
	XP_038469223	(Get FASTA)	NCBI Sequence Viewer
	XP_038469224	(Get FASTA)	NCBI Sequence Viewer
	XP_038469225	(Get FASTA)	NCBI Sequence Viewer
	XP_038475569	(Get FASTA)	NCBI Sequence Viewer
	XP_038475586	(Get FASTA)	NCBI Sequence Viewer
	XP_038534507	(Get FASTA)	NCBI Sequence Viewer
	XP_038534508	(Get FASTA)	NCBI Sequence Viewer
	XP_038534509	(Get FASTA)	NCBI Sequence Viewer
	XP_038534510	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000029917.5
	ENSCAFP00000055528.2
	ENSCAFP00030012364.1
	ENSCAFP00030012419.1
	ENSCAFP00040031839.1
	ENSCAFP00040031884.1
	ENSCAFP00040031948.1
	ENSCAFP00845011657
	ENSCAFP00845011657.1
	ENSCAFP00845011707
	ENSCAFP00845011707.1

RefSeq Acc Id:	XP_005625503 ⟸ XM_005625446
- Peptide Label:	isoform X3
- UniProtKB:	E2RAY1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKPALFSVLCEIKEKTGLSIRGAQEEDPPDPQLMRLDNMLLAEGVSGPEKGGGSAAAAAAAAAS GGSSDNSIEHSDYRAKLTQIRQIYHTELEKYEQACNEFTTHVMNLLREQSRTRPISPKEIERMV GIIHRKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEILNEYFYSHLSNPYPSEEA KEELAKKCSITVSQVSNWFGNKRIRYKKNIGKFQEEANLYAAKTAVTAAHAVAAAVQNNQTNSP TTPNSGSSGSFNLPNSGDMFMNMQSLNGDSYQGSQVGANVQSQVDTLRHVINQTGGYSDGLGGN SLYSPHNLNANGGWQDATTPSSVTSPTEGPGSVHSDTSN hide sequence

RefSeq Acc Id:

XP_022279523 ⟸ XM_022423815

- Peptide Label:

isoform X3

- Sequence:

show sequence

MKMLFPFVDHCFPEILLPPPTKEDLLAVDSRKHALNCHRMKPALFSVLCEIKEKTGLSIRGAQE
EDPPDPQLMRLDNMLLAEGVSGPEKGGGSAAAAAAAAASGGSSDNSIEHSDYRAKLTQIRQIYH
TELEKYEQACNEFTTHVMNLLREQSRTRPISPKEIERMVGIIHRKFSSIQMQLKQSTCEAVMIL
RSRFLDARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIR
YKKNIGKFQEEANLYAAKTAVTAAHAVAAAVQNNQTNSPTTPNSGSSGSFNLPNSGDMFMNMQS
LNGDSYQGSQVGANVQSQVDTLRHVINQTGGYSDGLGGNSLYSPHNLNANGGWQDATTPSSVTS
PTEGPGSVHSDTSN

hide sequence

RefSeq Acc Id:

ENSCAFP00000055528 ⟸ ENSCAFT00000069060

RefSeq Acc Id:

ENSCAFP00000029917 ⟸ ENSCAFT00000032127

RefSeq Acc Id:	XP_038343345 ⟸ XM_038487417
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038343344 ⟸ XM_038487416
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038343347 ⟸ XM_038487419
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038343346 ⟸ XM_038487418
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038469223 ⟸ XM_038613295
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038469222 ⟸ XM_038613294
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038469225 ⟸ XM_038613297
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038469224 ⟸ XM_038613296
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038534508 ⟸ XM_038678580
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0T6W8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038534507 ⟸ XM_038678579
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0Z2J7 (UniProtKB/TrEMBL), A0A8C0KPY1 (UniProtKB/TrEMBL), A0A8I3RW55 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038534510 ⟸ XM_038678582
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C0TAS3 (UniProtKB/TrEMBL), A0A8I3N916 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038534509 ⟸ XM_038678581
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038475569 ⟸ XM_038619641
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0Z2J7 (UniProtKB/TrEMBL), A0A8C0KPY1 (UniProtKB/TrEMBL), A0A8I3RW55 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038475586 ⟸ XM_038619658
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C0TAS3 (UniProtKB/TrEMBL), A0A8I3N916 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038405275 ⟸ XM_038549347
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038405272 ⟸ XM_038549344
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KPY1 (UniProtKB/TrEMBL), A0A8C0Z2J7 (UniProtKB/TrEMBL), A0A8I3RW55 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038405274 ⟸ XM_038549346
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C0TAS3 (UniProtKB/TrEMBL), A0A8I3N916 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038405273 ⟸ XM_038549345
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSCAFP00845011657 ⟸ ENSCAFT00845015030

RefSeq Acc Id:

ENSCAFP00845011707 ⟸ ENSCAFT00845015084

Protein Domains

Homeobox PBC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000020175	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030007604	UniProtKB/TrEMBL
	ENSCAFG00040019788	UniProtKB/TrEMBL
	ENSCAFG00845008541	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000032127.5	UniProtKB/TrEMBL
	ENSCAFT00000069060.2	UniProtKB/TrEMBL
	ENSCAFT00030014173.1	UniProtKB/TrEMBL
	ENSCAFT00030014242.1	UniProtKB/TrEMBL
	ENSCAFT00040036556.1	UniProtKB/TrEMBL
	ENSCAFT00040036610.1	UniProtKB/TrEMBL
	ENSCAFT00040036675.1	UniProtKB/TrEMBL
	ENSCAFT00845015030	ENTREZGENE
	ENSCAFT00845015030.1	UniProtKB/TrEMBL
	ENSCAFT00845015084	ENTREZGENE
	ENSCAFT00845015084.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	Homeobox-like_sf	UniProtKB/TrEMBL
	Homeobox_CS	UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/TrEMBL
	Homeobox_KN_domain	UniProtKB/TrEMBL
	PBX	UniProtKB/TrEMBL
NCBI Gene	PBX3	ENTREZGENE
PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	UniProtKB/TrEMBL
	PRE-B-CELL LEUKEMIA TRANSCRIPTION FACTOR 3	UniProtKB/TrEMBL
Pfam	Homeobox_KN	UniProtKB/TrEMBL
	PBC	UniProtKB/TrEMBL
PROSITE	HOMEOBOX_1	UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/TrEMBL
	PBC	UniProtKB/TrEMBL
SMART	HOX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
UniProt	A0A8C0KPY1	ENTREZGENE
	A0A8C0T6W8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0TAS3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0Z2J7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3N916	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3RW55	ENTREZGENE, UniProtKB/TrEMBL
	E2RAY1	ENTREZGENE
VGNC ID	VGNC:44288	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-11-21	PBX3	PBX homeobox 3	LOC106559327	uncharacterized LOC106559327	Data merged from RGD:12395094	737654	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar