AHCYL1 (adenosylhomocysteinase like 1) - Rat Genome Database

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Gene: AHCYL1 (adenosylhomocysteinase like 1) Canis lupus familiaris
Analyze
Symbol: AHCYL1
Name: adenosylhomocysteinase like 1
RGD ID: 12056219
Description: ENCODES a protein that exhibits adenosylhomocysteinase activity (inferred); identical protein binding (inferred); INVOLVED IN mRNA polyadenylation (ortholog); positive regulation of sodium ion transport (ortholog); protein export from nucleus (ortholog); ASSOCIATED WITH autistic disorder (ortholog); FOUND IN apical plasma membrane (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: adenosylhomocysteinase 2; LOW QUALITY PROTEIN: S-adenosylhomocysteine hydrolase-like protein 1; S-adenosylhomocysteine hydrolase-like 1; S-adenosylhomocysteine hydrolase-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1641,945,224 - 41,983,917 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl641,946,974 - 41,985,643 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha644,721,127 - 44,760,149 (-)NCBI
ROS_Cfam_1.0642,276,504 - 42,315,769 (-)NCBI
UMICH_Zoey_3.1642,009,439 - 42,048,653 (-)NCBI
UNSW_CanFamBas_1.0641,967,628 - 42,006,639 (-)NCBI
UU_Cfam_GSD_1.0642,405,225 - 42,441,807 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
AHCYL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1641,945,224 - 41,983,917 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl641,946,974 - 41,985,643 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha644,721,127 - 44,760,149 (-)NCBI
ROS_Cfam_1.0642,276,504 - 42,315,769 (-)NCBI
UMICH_Zoey_3.1642,009,439 - 42,048,653 (-)NCBI
UNSW_CanFamBas_1.0641,967,628 - 42,006,639 (-)NCBI
UU_Cfam_GSD_1.0642,405,225 - 42,441,807 (-)NCBI
AHCYL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1109,984,765 - 110,023,742 (+)EnsemblGRCh38hg38GRCh38
GRCh381109,984,765 - 110,023,742 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371110,527,387 - 110,566,364 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361110,328,831 - 110,367,887 (+)NCBINCBI36hg18NCBI36
Build 341110,239,349 - 110,277,038NCBI
Celera1108,774,307 - 108,813,363 (+)NCBI
Cytogenetic Map1p13.3NCBI
HuRef1108,396,850 - 108,435,827 (+)NCBIHuRef
CHM1_11110,642,207 - 110,681,185 (+)NCBICHM1_1
Ahcyl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393107,570,436 - 107,603,876 (-)NCBIGRCm39mm39
GRCm39 Ensembl3107,570,434 - 107,603,876 (-)Ensembl
GRCm383107,663,120 - 107,696,560 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3107,663,118 - 107,696,560 (-)EnsemblGRCm38mm10GRCm38
MGSCv373107,466,038 - 107,499,466 (-)NCBIGRCm37mm9NCBIm37
MGSCv363107,792,562 - 107,824,565 (-)NCBImm8
Celera3109,995,466 - 110,028,894 (-)NCBICelera
Cytogenetic Map3F2.3NCBI
cM Map346.83NCBI
Ahcyl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22195,294,149 - 195,328,586 (-)NCBI
Rnor_6.0 Ensembl2210,438,893 - 210,473,761 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02210,438,884 - 210,474,350 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02229,905,773 - 229,958,256 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42203,210,376 - 203,244,218 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12203,175,507 - 203,207,347 (-)NCBI
Celera2187,942,936 - 187,976,585 (-)NCBICelera
Cytogenetic Map2q34NCBI
Ahcyl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543513,487,398 - 13,526,189 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543513,487,441 - 13,525,924 (+)NCBIChiLan1.0ChiLan1.0
AHCYL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11127,672,978 - 127,682,007 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01112,629,545 - 112,668,605 (+)NCBIMhudiblu_PPA_v0panPan3
Ahcyl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505818,636,605 - 18,675,365 (-)NCBI
SpeTri2.0NW_0049367041,438,781 - 1,477,541 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AHCYL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4110,092,528 - 110,132,647 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14110,092,976 - 110,132,826 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
AHCYL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12023,519,737 - 23,559,959 (-)NCBI
ChlSab1.1 Ensembl2023,518,567 - 23,559,850 (-)Ensembl
Vero_WHO_p1.0NW_02366603834,899,567 - 34,939,795 (+)NCBI
Ahcyl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247725,743,658 - 5,782,458 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 10 6
Low 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005621804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005621805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038479771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038479772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038479773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038552061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038552065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038669860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038669861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038669862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000002383   ⟹   ENSCAFP00000002205
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl641,946,974 - 41,983,998 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000031484   ⟹   ENSCAFP00000029308
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl641,946,974 - 41,985,643 (-)Ensembl
RefSeq Acc Id: XM_005621804   ⟹   XP_005621861
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1641,945,224 - 41,983,915 (-)NCBI
Dog10K_Boxer_Tasha644,721,127 - 44,759,807 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005621805   ⟹   XP_005621862
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1641,947,709 - 41,983,917 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038479771   ⟹   XP_038335699
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1642,009,439 - 42,048,653 (-)NCBI
RefSeq Acc Id: XM_038479772   ⟹   XP_038335700
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1642,011,924 - 42,048,653 (-)NCBI
RefSeq Acc Id: XM_038479773   ⟹   XP_038335701
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1642,009,439 - 42,048,311 (-)NCBI
RefSeq Acc Id: XM_038541051   ⟹   XP_038396979
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0642,405,225 - 42,441,807 (-)NCBI
RefSeq Acc Id: XM_038552061   ⟹   XP_038407989
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha644,721,127 - 44,760,149 (-)NCBI
RefSeq Acc Id: XM_038552065   ⟹   XP_038407993
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha644,723,612 - 44,760,149 (-)NCBI
RefSeq Acc Id: XM_038605183   ⟹   XP_038461111
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0641,967,628 - 42,006,639 (-)NCBI
RefSeq Acc Id: XM_038605184   ⟹   XP_038461112
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0641,970,113 - 42,006,639 (-)NCBI
RefSeq Acc Id: XM_038605185   ⟹   XP_038461113
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0641,967,628 - 42,006,291 (-)NCBI
RefSeq Acc Id: XM_038669860   ⟹   XP_038525788
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0642,276,504 - 42,315,769 (-)NCBI
RefSeq Acc Id: XM_038669861   ⟹   XP_038525789
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0642,278,989 - 42,315,769 (-)NCBI
RefSeq Acc Id: XM_038669862   ⟹   XP_038525790
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0642,276,504 - 42,315,426 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005621861   ⟸   XM_005621804
- Peptide Label: isoform X3
- UniProtKB: E2REN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005621862   ⟸   XM_005621805
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCAFP00000029308   ⟸   ENSCAFT00000031484
RefSeq Acc Id: ENSCAFP00000002205   ⟸   ENSCAFT00000002383
RefSeq Acc Id: XP_038335699   ⟸   XM_038479771
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038335701   ⟸   XM_038479773
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038335700   ⟸   XM_038479772
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038461111   ⟸   XM_038605183
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038461113   ⟸   XM_038605185
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038461112   ⟸   XM_038605184
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038525788   ⟸   XM_038669860
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038525790   ⟸   XM_038669862
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038525789   ⟸   XM_038669861
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038407989   ⟸   XM_038552061
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038407993   ⟸   XM_038552065
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038396979   ⟸   XM_038541051
- Peptide Label: isoform X2
Protein Domains
AdoHcyase_NAD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019796 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000002205 ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFP00000029308 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000002383 UniProtKB/TrEMBL
  ENSCAFT00000031484 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1480 UniProtKB/TrEMBL
InterPro Adenosylhomocyst_ase-like_sf UniProtKB/TrEMBL
  Adenosylhomocysteinase-like UniProtKB/TrEMBL
  Ado_hCys_hydrolase_NAD-bd UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  S-Ado-L-homoCys_hydrolase_CS UniProtKB/TrEMBL
KEGG Report cfa:611790 UniProtKB/TrEMBL
NCBI Gene AHCYL1 ENTREZGENE
PANTHER PTHR23420 UniProtKB/TrEMBL
Pfam AdoHcyase UniProtKB/TrEMBL
  AdoHcyase_NAD UniProtKB/TrEMBL
PIRSF Ad_hcy_hydrolase UniProtKB/TrEMBL
PROSITE ADOHCYASE_1 UniProtKB/TrEMBL
  ADOHCYASE_2 UniProtKB/TrEMBL
SMART AdoHcyase UniProtKB/TrEMBL
  AdoHcyase_NAD UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
TIGRFAMs ahcY UniProtKB/TrEMBL
UniProt E2REN0 ENTREZGENE, UniProtKB/TrEMBL
  F1P7I1_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:37725 ENTREZGENE