TMEM185B (transmembrane protein 185B) - Rat Genome Database

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Gene: TMEM185B (transmembrane protein 185B) Canis lupus familiaris
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Symbol: TMEM185B
Name: transmembrane protein 185B
RGD ID: 12054271
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: VALIDATED
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11929,892,735 - 29,894,526 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1930,149,219 - 30,151,009 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01931,268,313 - 31,270,107 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1931,268,280 - 31,270,103 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11929,954,584 - 29,956,373 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01930,123,872 - 30,125,662 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01931,309,974 - 31,311,768 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References

Genomics

Comparative Map Data
TMEM185B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11929,892,735 - 29,894,526 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1930,149,219 - 30,151,009 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01931,268,313 - 31,270,107 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1931,268,280 - 31,270,103 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11929,954,584 - 29,956,373 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01930,123,872 - 30,125,662 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01931,309,974 - 31,311,768 (+)NCBIUU_Cfam_GSD_1.0
TMEM185B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382120,217,479 - 120,223,400 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2120,217,479 - 120,223,400 (-)EnsemblGRCh38hg38GRCh38
GRCh372120,975,055 - 120,980,976 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362120,695,324 - 120,697,454 (-)NCBINCBI36Build 36hg18NCBI36
Celera2114,305,701 - 114,307,831 (-)NCBICelera
Cytogenetic Map2q14.2NCBI
HuRef2113,298,822 - 113,304,759 (-)NCBIHuRef
CHM1_12120,979,441 - 120,985,378 (-)NCBICHM1_1
T2T-CHM13v2.02120,652,239 - 120,658,160 (-)NCBIT2T-CHM13v2.0
Tmem185b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391119,453,884 - 119,456,713 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1119,453,890 - 119,456,713 (+)EnsemblGRCm39 Ensembl
GRCm381119,526,154 - 119,528,983 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1119,526,160 - 119,528,983 (+)EnsemblGRCm38mm10GRCm38
MGSCv371121,422,744 - 121,424,803 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361121,353,713 - 121,355,772 (+)NCBIMGSCv36mm8
Celera1122,184,964 - 122,187,094 (+)NCBICelera
Cytogenetic Map1E2.3NCBI
cM Map152.31NCBI
Tmem185b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81333,200,329 - 33,203,660 (+)NCBIGRCr8
mRatBN7.21330,647,533 - 30,650,864 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1330,647,482 - 30,650,858 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1333,228,893 - 33,232,226 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01334,516,732 - 34,520,065 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01331,790,854 - 31,794,186 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01335,554,621 - 35,557,952 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1335,554,964 - 35,556,016 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01340,669,220 - 40,672,564 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41332,276,974 - 32,279,005 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11332,280,108 - 32,281,829 (+)NCBI
Celera1330,543,175 - 30,546,506 (+)NCBICelera
Cytogenetic Map13q11NCBI
Tmem185b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554599,610,905 - 9,613,405 (+)NCBIChiLan1.0ChiLan1.0
TMEM185B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21322,219,290 - 22,225,355 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B22,238,267 - 22,240,349 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B7,149,925 - 7,155,857 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B120,725,913 - 120,731,687 (-)NCBIpanpan1.1PanPan1.1panPan2
Tmem185b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530391,308,751 - 91,314,210 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646950,303,976 - 50,305,028 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646950,303,513 - 50,306,321 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM185B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1531,141,126 - 31,142,181 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11531,140,283 - 31,146,656 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21536,617,474 - 36,619,775 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM185B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11010,068,817 - 10,070,996 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1010,069,244 - 10,070,296 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606112,616,649 - 12,619,722 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem185b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473224,869,529 - 24,872,583 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMEM185B
20 total Variants

Expression


Sequence


RefSeq Acc Id: ENSCAFT00845047945   ⟹   ENSCAFP00845037612
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1931,268,280 - 31,270,103 (+)Ensembl
RefSeq Acc Id: NM_001242320   ⟹   NP_001229249
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11929,892,735 - 29,894,526 (+)NCBI
Dog10K_Boxer_Tasha1930,149,219 - 30,151,009 (+)NCBI
ROS_Cfam_1.01931,268,313 - 31,270,107 (+)NCBI
UMICH_Zoey_3.11929,954,584 - 29,956,373 (+)NCBI
UNSW_CanFamBas_1.01930,123,872 - 30,125,662 (+)NCBI
UU_Cfam_GSD_1.01931,309,974 - 31,311,768 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001229249 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000074670.1
  ENSCAFP00030035511.1
  ENSCAFP00040010800.1
  ENSCAFP00845037612
  ENSCAFP00845037612.1
RefSeq Acc Id: NP_001229249   ⟸   NM_001242320
- UniProtKB: A0A8C0KNQ2 (UniProtKB/TrEMBL),   A0A8C0P2N9 (UniProtKB/TrEMBL),   A0A8I3PXP9 (UniProtKB/TrEMBL),   A0A8C0Q940 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00845037612   ⟸   ENSCAFT00845047945


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000056634 UniProtKB/TrEMBL
  ENSCAFG00030022152 UniProtKB/TrEMBL
  ENSCAFG00040006700 UniProtKB/TrEMBL
  ENSCAFG00845027210 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000104936.1 UniProtKB/TrEMBL
  ENSCAFT00030040683.1 UniProtKB/TrEMBL
  ENSCAFT00040012455.1 UniProtKB/TrEMBL
  ENSCAFT00845047945 ENTREZGENE
  ENSCAFT00845047945.1 UniProtKB/TrEMBL
InterPro TM_Fragile-X-F-assoc UniProtKB/TrEMBL
KEGG Report cfa:476112 UniProtKB/TrEMBL
NCBI Gene TMEM185B ENTREZGENE
PANTHER PTHR13568 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 185B UniProtKB/TrEMBL
Pfam Tmemb_185A UniProtKB/TrEMBL
UniProt A0A8C0KNQ2 ENTREZGENE
  A0A8C0P2N9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Q940 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PXP9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:47512 ENTREZGENE