CD1D (CD1d molecule) - Rat Genome Database

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Gene: CD1D (CD1d molecule) Canis lupus familiaris
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Symbol: CD1D
Name: CD1d molecule
RGD ID: 12054076
Description: ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); endogenous lipid antigen binding (ortholog); exogenous lipid antigen binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); antigen processing and presentation, endogenous lipid antigen via MHC class Ib (ortholog); antigen processing and presentation, exogenous lipid antigen via MHC class Ib (ortholog); ASSOCIATED WITH Acute Hepatitis (ortholog); Arenaviridae infectious disease (ortholog); asthma (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); early endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: antigen-presenting glycoprotein CD1d; canCD1d; LOC100856535
RGD Orthologs
Human
Mouse
Rat
Bonobo
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13823,489,169 - 23,491,712 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3823,516,058 - 23,520,487 (-)NCBI
ROS_Cfam_1.03823,658,417 - 23,662,742 (-)NCBI
UMICH_Zoey_3.13823,402,320 - 23,406,627 (-)NCBI
UNSW_CanFamBas_1.03823,956,328 - 23,960,599 (-)NCBI
UU_Cfam_GSD_1.03824,357,336 - 24,361,653 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22988997   PMID:26687789  


Genomics

Comparative Map Data
CD1D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13823,489,169 - 23,491,712 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3823,516,058 - 23,520,487 (-)NCBI
ROS_Cfam_1.03823,658,417 - 23,662,742 (-)NCBI
UMICH_Zoey_3.13823,402,320 - 23,406,627 (-)NCBI
UNSW_CanFamBas_1.03823,956,328 - 23,960,599 (-)NCBI
UU_Cfam_GSD_1.03824,357,336 - 24,361,653 (-)NCBI
CD1D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1158,178,030 - 158,186,427 (+)EnsemblGRCh38hg38GRCh38
GRCh381158,178,030 - 158,186,427 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371158,147,820 - 158,156,217 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361156,416,361 - 156,422,841 (+)NCBINCBI36hg18NCBI36
Build 341154,962,809 - 154,967,758NCBI
Celera1131,220,809 - 131,227,289 (+)NCBI
Cytogenetic Map1q23.1NCBI
HuRef1129,508,011 - 129,514,491 (+)NCBIHuRef
CHM1_11159,546,145 - 159,552,625 (+)NCBICHM1_1
Cd1d1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39386,903,141 - 86,919,665 (-)NCBIGRCm39mm39
GRCm39 Ensembl386,903,141 - 86,906,748 (-)Ensembl
GRCm38386,995,834 - 87,012,358 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl386,995,834 - 86,999,441 (-)EnsemblGRCm38mm10GRCm38
MGSCv37386,799,756 - 86,803,262 (-)NCBIGRCm37mm9NCBIm37
MGSCv36387,081,765 - 87,085,267 (-)NCBImm8
Celera387,021,305 - 87,024,811 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map337.91NCBI
Cd1d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22172,423,582 - 172,427,089 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2172,423,582 - 172,427,089 (-)Ensembl
Rnor_6.02186,330,298 - 186,333,805 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2186,330,298 - 186,333,805 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02205,728,725 - 205,732,232 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42179,011,165 - 179,014,672 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12178,961,270 - 178,964,778 (-)NCBI
Celera2166,382,474 - 166,385,981 (-)NCBICelera
Cytogenetic Map2q34NCBI
CD1D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11137,339,774 - 137,348,173 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1137,341,690 - 137,348,173 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01133,549,258 - 133,557,752 (+)NCBIMhudiblu_PPA_v0panPan3
PCD1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1492,035,122 - 92,040,724 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24100,378,316 - 100,383,517 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD1D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1205,726,307 - 5,733,355 (-)NCBI
ChlSab1.1 Ensembl205,727,049 - 5,730,061 (-)Ensembl
Vero_WHO_p1.0NW_0236660384,918,748 - 4,925,895 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005640956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038448742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038448743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038448744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038464170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038464171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038650824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038650825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038650826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU930707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU930709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU930710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU930711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU930712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HQ392473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HQ392474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JX139112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT361524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005640956   ⟹   XP_005641013
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13823,489,169 - 23,491,712 (-)NCBI
Dog10K_Boxer_Tasha3823,516,058 - 23,518,737 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038448742   ⟹   XP_038304670
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03823,658,417 - 23,662,742 (-)NCBI
RefSeq Acc Id: XM_038448743   ⟹   XP_038304671
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03823,658,417 - 23,662,742 (-)NCBI
RefSeq Acc Id: XM_038448744   ⟹   XP_038304672
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03823,658,417 - 23,660,985 (-)NCBI
RefSeq Acc Id: XM_038464170   ⟹   XP_038320098
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3823,516,058 - 23,520,487 (-)NCBI
RefSeq Acc Id: XM_038464171   ⟹   XP_038320099
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3823,516,058 - 23,520,487 (-)NCBI
RefSeq Acc Id: XM_038522603   ⟹   XP_038378531
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13823,402,320 - 23,406,627 (-)NCBI
RefSeq Acc Id: XM_038522604   ⟹   XP_038378532
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13823,402,320 - 23,406,627 (-)NCBI
RefSeq Acc Id: XM_038522605   ⟹   XP_038378533
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13823,402,320 - 23,404,881 (-)NCBI
RefSeq Acc Id: XM_038586405   ⟹   XP_038442333
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03824,357,336 - 24,361,653 (-)NCBI
RefSeq Acc Id: XM_038586406   ⟹   XP_038442334
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03824,357,336 - 24,361,653 (-)NCBI
RefSeq Acc Id: XM_038586407   ⟹   XP_038442335
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03824,357,336 - 24,359,904 (-)NCBI
RefSeq Acc Id: XM_038650824   ⟹   XP_038506752
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03823,956,328 - 23,960,598 (-)NCBI
RefSeq Acc Id: XM_038650825   ⟹   XP_038506753
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03823,956,328 - 23,960,599 (-)NCBI
RefSeq Acc Id: XM_038650826   ⟹   XP_038506754
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03823,956,328 - 23,958,888 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005641013   ⟸   XM_005640956
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_038378532   ⟸   XM_038522604
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038378531   ⟸   XM_038522603
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038378533   ⟸   XM_038522605
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038506753   ⟸   XM_038650825
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038506752   ⟸   XM_038650824
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038506754   ⟸   XM_038650826
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038304671   ⟸   XM_038448743
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038304670   ⟸   XM_038448742
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038304672   ⟸   XM_038448744
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038320099   ⟸   XM_038464171
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038320098   ⟸   XM_038464170
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038442334   ⟸   XM_038586406
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038442333   ⟸   XM_038586405
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038442335   ⟸   XM_038586407
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC100856535 ENTREZGENE
VGNC ID VGNC:53116 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-09-12 CD1D  CD1d molecule  LOC100856535  antigen-presenting glycoprotein CD1d  Symbol and/or name change 5135510 APPROVED