TRMT1L (tRNA methyltransferase 1 like)

Gene: TRMT1L (tRNA methyltransferase 1 like) Canis lupus familiaris

Analyze

Symbol:

TRMT1L

Name:

tRNA methyltransferase 1 like

RGD ID:

12053906

Description:

ENCODES a protein that exhibits metal ion binding (inferred); methyltransferase activity (inferred); RNA binding (inferred); INVOLVED IN adult behavior (ortholog); adult locomotory behavior (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); megacolon (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

TRM1 tRNA methyltransferase 1-like

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	18,294,489 - 18,330,002 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	18,295,027 - 18,329,730 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	17,878,671 - 17,914,734 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	18,026,950 - 18,063,131 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	18,026,953 - 18,062,433 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	17,936,505 - 17,971,963 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	18,044,297 - 18,080,428 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	18,175,449 - 18,211,438 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

megacolon (ISO)

parathyroid carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adult behavior (ISO)

adult locomotory behavior (ISO)

methylation (IEA)

tRNA N2-guanine methylation (IEA)

tRNA processing (IEA)

Cellular Component

nucleus (IEA)

Molecular Function

metal ion binding (IEA)

methyltransferase activity (IEA)

protein binding (ISO)

RNA binding (IEA)

tRNA (guanine(10)-N2)-methyltransferase activity (IEA)

tRNA binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

TRMT1L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	18,294,489 - 18,330,002 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	18,295,027 - 18,329,730 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	17,878,671 - 17,914,734 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	18,026,950 - 18,063,131 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	18,026,953 - 18,062,433 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	17,936,505 - 17,971,963 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	18,044,297 - 18,080,428 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	18,175,449 - 18,211,438 (-)	NCBI		UU_Cfam_GSD_1.0

TRMT1L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	185,118,101 - 185,157,537 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	185,118,101 - 185,157,072 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	185,087,233 - 185,126,230 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	183,353,856 - 183,392,706 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	181,818,893 - 181,857,740	NCBI
Celera	1	158,197,913 - 158,236,811 (-)	NCBI		Celera
Cytogenetic Map	1	q25.3	NCBI
HuRef	1	156,322,500 - 156,361,523 (-)	NCBI		HuRef
CHM1_1	1	186,508,906 - 186,547,935 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	184,475,011 - 184,514,447 (-)	NCBI		T2T-CHM13v2.0

Trmt1l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	151,304,293 - 151,333,934 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	151,304,293 - 151,333,912 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	151,428,542 - 151,458,183 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	151,428,542 - 151,458,161 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	153,275,778 - 153,305,313 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	153,190,866 - 153,220,377 (+)	NCBI		MGSCv36	mm8
Celera	1	153,857,643 - 153,887,243 (+)	NCBI		Celera
Cytogenetic Map	1	G1	NCBI
cM Map	1	64.12	NCBI

Trmt1l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	66,060,186 - 66,093,247 (+)	NCBI		GRCr8
mRatBN7.2	13	63,510,097 - 63,543,268 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	63,510,204 - 63,543,266 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	66,129,826 - 66,162,884 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	67,394,444 - 67,427,506 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	64,657,528 - 64,690,880 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	68,785,889 - 68,819,018 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	68,785,827 - 68,818,990 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	73,748,125 - 73,781,250 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	66,301,000 - 66,334,062 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	66,314,936 - 66,347,916 (+)	NCBI
Celera	13	63,441,064 - 63,474,125 (+)	NCBI		Celera
Cytogenetic Map	13	q21	NCBI

Trmt1l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955406	23,735,715 - 23,772,010 (-)	NCBI	ChiLan1.0	ChiLan1.0

TRMT1L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	64,565,241 - 64,604,765 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	64,248,811 - 64,288,381 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	160,642,659 - 160,681,709 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	164,795,113 - 164,833,940 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	164,795,113 - 164,833,940 (-)	Ensembl	panpan1.1		panPan2

Trmt1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	87,177,383 - 87,205,051 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	5,023,826 - 5,054,734 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	5,024,218 - 5,051,797 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRMT1L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	126,300,390 - 126,347,274 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	126,302,642 - 126,347,277 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	138,748,234 - 138,795,992 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TRMT1L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	44,232,374 - 44,272,610 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	44,232,433 - 44,272,616 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	45,438,628 - 45,478,986 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Trmt1l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624814	8,409,949 - 8,434,833 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in TRMT1L
340 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	5		12						11	8	10	4
Low		5	10	6	6	6	6	6	1			2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_022420975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038480952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038542305	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038542306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038542307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038542308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038564679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038564699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038606469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038606470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038606471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038606472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038671135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038671136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038671137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038671138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_844760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000021461 ⟹ ENSCAFP00000019929

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	7	18,295,027 - 18,329,730 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000069998 ⟹ ENSCAFP00000063897

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	7	18,295,270 - 18,329,730 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000074151 ⟹ ENSCAFP00000055545

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	7	18,295,270 - 18,329,730 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845009011 ⟹ ENSCAFP00845007106

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	7	18,026,953 - 18,062,416 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845009016 ⟹ ENSCAFP00845007109

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	7	18,027,129 - 18,062,428 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845009031 ⟹ ENSCAFP00845007120

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	7	18,027,487 - 18,062,433 (-)	Ensembl

RefSeq Acc Id:

XM_022420975 ⟹ XP_022276683

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	7	18,294,489 - 18,320,835 (-)	NCBI
Dog10K_Boxer_Tasha	7	17,878,671 - 17,904,910 (-)	NCBI

Sequence:

show sequence

AGCAGATCAAGCTTACAGAAACTCTTACCTTTTAGGGTGGAAGAGAGGGAAGAGACCTATGAAG
AAGATTAAGGAGGATGGGAGGAGAGAACTAAGTGCCATATCATAAAGAGGCTGTGTTACAGGAT
GTGCATCTGTCACTTACCTTGTCGACCAGTGAAACCAAACATTATTGGAGAACAGATATCCAGT
AAAATGGGCGCCCATTATCATTGTATCATTTGTTCAGCAACAATCACCAGAAGGACGGATATGC
TGGGACACGTTAGGCGACATGTGAATAAAGGAGAGACGAAATCCAGGTATATTGCTGCTTCTGC
TGCAAAACCACCTAATGAAATTTTGAAAGAGACAGACACAGATGTACAAGTTTGTCCTAACTAC
TCTATACCTCAAAAAACAGATTCCTATTTTAATCCCAAAATGAAACTAAATCGGCAGCTAATAT
TCTGTACATTGGCTGCTTTGGCTGAGGAACGAAAACCTTTGGAATGTCTAGATGCCTTTGGAGC
CACTGGAATAATGGGATTACAGTGGGCAAAACATCTTGGAAGTGCAGTTAAGGTTACAATTAAT
GACTTGAATGAGAACTCTGTGACACTGATTCAGGAAAACTGCCATTTAAACAAATTGAAAGTGG
TAGTGGACAGTAAGGAAGAAGAAGAAAGTGATGATATTCTTAAAGAAGGAGAAGAAAACCTTGG
TAATATTAAGGTGACCAAAATGGATGCCAATGTACTGATGCATTTGAGATCTTTTGATTTCATA
CACCTAGACCCTTTTGGAACATCAGTGAACTATCTAGATTCTGCATTCAGAAATATAAGAAACC
TTGGCATAGTATCAGTGACTTCTACAGATATCAGTTCTTTATATGCCAAGGCACAACATGTTGC
CCGACGTCACTATGGCTGTAACATTGTCCGAACTGAATATTACAAGGAACTAGCAGCCAGAATT
GTTGTAGCTGCAGTGGCAAGAGCTGCAGCCCGATGTAACAAAGGCATAGAAGTACTGTTTGCAG
TGGCTCTGGAACATTTTGTGTTGGTCGTCGTGAGAGTTTTGAGGGGGCCTACTTCGGCAGATGA
AACAGCCAAGAAGATTCAGTACCTGATCCATTGTCAGTGGTGTGAAGAGAGAATTTTTCAGAAG
GATGGTAATATGGTAGAAGAAAACCCGTATAGACAGCTGCCCTGTAACTGTCATGGAAGCATGC
CTGGAAAGACAGCAATAGAACTTGGACCTCTATGGTCAAGTTCCCTTTTCAATACTGGATTCCT
CAAAAGAATGCTATTTGAATCTCTTCACCATGGTTTAGATGACATTCAGACCCTAATAAAGACA
TTAATCTTTGAATCAGAATGTACTCCTCAAAGTCAATTTTCAGTTCATGCACCTTCAAATCTCA
ACAAGCAAGAAGAATATGGTGTGTTTATTAAAACTACAGATGATACCACAACAGATAATTACAT
TGCACAAGGAAAGAGAAAAGGTAATGAAACAATCACAACTTTAGCCAAAAGGCAAAAGACTGAT
GTCAGTACTGAACACCCTCCCTTCTACTACAACATCCACAGACACAGCATTAAAGGAATGAATA
TGCCAAAGTTAAAAAAGTTTTTGTGCTATCTTTCTCAAGCAGGCTTTCGAGTAAGCCGAACTCA
TTTTGACCCAATGGGTGTTCGTACAGATGCACCCCTGATGCAGTTTAAATCTATCCTCTTAAAG
TACAGCACCCCCACCTATACAGGAGGACAGTCGGAAGGCCATGTCCAGTCAGCATCTGAAGATA
CAGTAGCTGACAAGGTTGAAATGTCAGTGAACGACAAAGCAGAACCAAGCAGTTGCAGAAGATG
GTAAACTTAAAGAAGAGTTACTCAGATGTCTGTATAGATGGCCTAATAATTCTCTATACCAACT
GTAGTTTTTTCTATTCTTTTAATTCAGTGGTGTAAAAATAAAAAACAGTGCTGTTTTCATTCAG
GAAATTAGCAGTTTCTAACTAGCTAGTTTGGGAGCTATGCTTTCCAGGTTTTTCTTACTGTAAA
AAAAACTTAAAATTTTAATGAAAACATTTCATATGAAGCCAAGTTTATGACTGAGATCACCCTA
CCATTTAGTAACTCAGAAAACTTTCACTTGCAAAGTGTTTGGAATTTTATGTACGTTATGGAAG
CCGTCCCTTTCTGTTCTTAATCACATGTCTACTTAGCTGATTCAGGTTTGTTTTTCTGTTTGTA
GCACACAAAATGAAGCCAGAAGCCTTTCACGTATGAAATTACCTTGAATGCGAACAATGTTCTT
TCAGATCACTAATGCTGTTTTCACAATTACGAAGCTAAAATGTTCCCAATTTTAAGAAATCCTA
CTTCTTTCCACATTGATCTTTTAACTTCTTGCTAGCTTTTGAGAATTTCAATACTTGCCTGAGA
TAGAAATACATTTTTCTTATAAGGTCTAGATGACTAAAGGCAGAGTAAGATTTTGTCAAAATAA
AATGAGACCATGTTCTATTATAACTGTTCACAAGCACTGAAATTCTGAAGAGAGTTTTTGCTGT
AAATTAAACTGGGTGATCTCAAGTGCCTCAGTTAATGCACGTACAATATTCATTTGCTTGGTTG
TGCTACCTCTCAGAAGTAAAACTTGTCACCTTATGAACTTATGAAGTGAGGATTTTTTTTTTAG
GGGGGTATAATTTGTTTTGTTTTCAGTGTGTGTATATGCTCTTTTTTTTTTTTTTTTTTTTTTT
GTATACGTAGCCCAGGCTAACATGACTATGAAAATTAGTAGAAACTCCATTAATAAACCTTGTT
CTTGCTTCA

hide sequence

RefSeq Acc Id:

XM_038480952 ⟹ XP_038336880

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	7	17,936,505 - 17,971,963 (-)	NCBI

RefSeq Acc Id:

XM_038542305 ⟹ XP_038398233

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	7	18,175,449 - 18,210,781 (-)	NCBI

RefSeq Acc Id:

XM_038542306 ⟹ XP_038398234

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	7	18,175,449 - 18,211,438 (-)	NCBI

RefSeq Acc Id:

XM_038542307 ⟹ XP_038398235

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	7	18,175,449 - 18,201,613 (-)	NCBI

RefSeq Acc Id:

XM_038542308 ⟹ XP_038398236

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	7	18,175,449 - 18,201,494 (-)	NCBI

RefSeq Acc Id:

XM_038564679 ⟹ XP_038420607

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	7	17,878,671 - 17,914,734 (-)	NCBI

RefSeq Acc Id:

XM_038564699 ⟹ XP_038420627

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	7	17,878,671 - 17,904,791 (-)	NCBI

RefSeq Acc Id:

XM_038606469 ⟹ XP_038462397

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	7	18,044,297 - 18,079,776 (-)	NCBI

RefSeq Acc Id:

XM_038606470 ⟹ XP_038462398

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	7	18,044,297 - 18,080,428 (-)	NCBI

RefSeq Acc Id:

XM_038606471 ⟹ XP_038462399

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	7	18,044,297 - 18,070,612 (-)	NCBI

RefSeq Acc Id:

XM_038606472 ⟹ XP_038462400

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	7	18,044,297 - 18,070,493 (-)	NCBI

RefSeq Acc Id:

XM_038671135 ⟹ XP_038527063

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	7	18,026,950 - 18,062,475 (-)	NCBI

RefSeq Acc Id:

XM_038671136 ⟹ XP_038527064

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	7	18,026,950 - 18,063,131 (-)	NCBI

RefSeq Acc Id:

XM_038671137 ⟹ XP_038527065

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	7	18,026,950 - 18,053,291 (-)	NCBI

RefSeq Acc Id:

XM_038671138 ⟹ XP_038527066

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	7	18,026,950 - 18,053,172 (-)	NCBI

RefSeq Acc Id:

XM_844760 ⟹ XP_849853

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	7	18,294,489 - 18,330,002 (-)	NCBI
Dog10K_Boxer_Tasha	7	17,878,671 - 17,914,078 (-)	NCBI

Sequence:

show sequence

CCGATACGTTTCTGCGCAGGCTGTGGTGGCGTCGTAACGCCTCGGGGAAAGGGAAGCGGACCGG
ACCGCGAATCGCTGCCTCTGGCTTTTTATTTTTCTGCTGACAGGATTTGGTCACTGGTCCTTCA
TCTTTTGTCTGTTGCACGCATCCAGCCCTTCCCACTTGCCTTCCCACTCCTGGGATCCAGCCCT
GTGGGCGCTCACGCCAGTTCTCTCACCCCGCCGTGTGCCCCCGCAGGTCCCCGGGCGGGCCTGG
CACGGAGGCGGTAGCTATGGAGAACATGGCGGAGGAGGAGCTGCTGCCCCCGGAGAAGGAGGAG
GTGGAGGTGGCCCAGGTCCAGGTCCCGACCCCGACCCCGGCCCCGGACTCGGCTCGGGTCCCAG
CTCCGGCCCCGGATTCGGCCCCGGCCTCGGCTCCGACTCCGGCCTCGGCTCCAGCCCCAGCCCC
CGCCCTGGCCCAGGCTCCGGCCCTGTCCCCGTCCCTAGCCTCTGCCCCTGACGAGGCGGAAAGC
AAGAGACACATCTCAATCCAGAGGCAGCTTGCTGATCTCGAGAAGTTAGCCTTCGTAACTGAAG
GAGATTTTGACTCTGCCAGTTCATTGAACTCAGAGAGTCTTGATGCAGGAAACAAACAGTCTTG
TCCATTGTGTCCTAAGGAAAAATTCAGAGCTTGTAATAGCCATAAGCTTCGTCGTCACCTTCAA
AATTTACACTGGAAAGTCTCAGTTGAATTTGAAGGTTACAGGATGTGCATCTGTCACTTACCTT
GTCGACCAGTGAAACCAAACATTATTGGAGAACAGATATCCAGTAAAATGGGCGCCCATTATCA
TTGTATCATTTGTTCAGCAACAATCACCAGAAGGACGGATATGCTGGGACACGTTAGGCGACAT
GTGAATAAAGGAGAGACGAAATCCAGGTATATTGCTGCTTCTGCTGCAAAACCACCTAATGAAA
TTTTGAAAGAGACAGACACAGATGTACAAGTTTGTCCTAACTACTCTATACCTCAAAAAACAGA
TTCCTATTTTAATCCCAAAATGAAACTAAATCGGCAGCTAATATTCTGTACATTGGCTGCTTTG
GCTGAGGAACGAAAACCTTTGGAATGTCTAGATGCCTTTGGAGCCACTGGAATAATGGGATTAC
AGTGGGCAAAACATCTTGGAAGTGCAGTTAAGGTTACAATTAATGACTTGAATGAGAACTCTGT
GACACTGATTCAGGAAAACTGCCATTTAAACAAATTGAAAGTGGTAGTGGACAGTAAGGAAGAA
GAAGAAAGTGATGATATTCTTAAAGAAGGAGAAGAAAACCTTGGTAATATTAAGGTGACCAAAA
TGGATGCCAATGTACTGATGCATTTGAGATCTTTTGATTTCATACACCTAGACCCTTTTGGAAC
ATCAGTGAACTATCTAGATTCTGCATTCAGAAATATAAGAAACCTTGGCATAGTATCAGTGACT
TCTACAGATATCAGTTCTTTATATGCCAAGGCACAACATGTTGCCCGACGTCACTATGGCTGTA
ACATTGTCCGAACTGAATATTACAAGGAACTAGCAGCCAGAATTGTTGTAGCTGCAGTGGCAAG
AGCTGCAGCCCGATGTAACAAAGGCATAGAAGTACTGTTTGCAGTGGCTCTGGAACATTTTGTG
TTGGTCGTCGTGAGAGTTTTGAGGGGGCCTACTTCGGCAGATGAAACAGCCAAGAAGATTCAGT
ACCTGATCCATTGTCAGTGGTGTGAAGAGAGAATTTTTCAGAAGGATGGTAATATGGTAGAAGA
AAACCCGTATAGACAGCTGCCCTGTAACTGTCATGGAAGCATGCCTGGAAAGACAGCAATAGAA
CTTGGACCTCTATGGTCAAGTTCCCTTTTCAATACTGGATTCCTCAAAAGAATGCTATTTGAAT
CTCTTCACCATGGTTTAGATGACATTCAGACCCTAATAAAGACATTAATCTTTGAATCAGAATG
TACTCCTCAAAGTCAATTTTCAGTTCATGCACCTTCAAATCTCAACAAGCAAGAAGAATATGGT
GTGTTTATTAAAACTACAGATGATACCACAACAGATAATTACATTGCACAAGGAAAGAGAAAAG
GTAATGAAACAATCACAACTTTAGCCAAAAGGCAAAAGACTGATGTCAGTACTGAACACCCTCC
CTTCTACTACAACATCCACAGACACAGCATTAAAGGAATGAATATGCCAAAGTTAAAAAAGTTT
TTGTGCTATCTTTCTCAAGCAGGCTTTCGAGTAAGCCGAACTCATTTTGACCCAATGGGTGTTC
GTACAGATGCACCCCTGATGCAGTTTAAATCTATCCTCTTAAAGTACAGCACCCCCACCTATAC
AGGAGGACAGTCGGAAGGCCATGTCCAGTCAGCATCTGAAGATACAGTAGCTGACAAGGTTGAA
ATGTCAGTGAACGACAAAGCAGAACCAAGCAGTTGCAGAAGATGGTAAACTTAAAGAAGAGTTA
CTCAGATGTCTGTATAGATGGCCTAATAATTCTCTATACCAACTGTAGTTTTTTCTATTCTTTT
AATTCAGTGGTGTAAAAATAAAAAACAGTGCTGTTTTCATTCAGGAAATTAGCAGTTTCTAACT
AGCTAGTTTGGGAGCTATGCTTTCCAGGTTTTTCTTACTGTAAAAAAAACTTAAAATTTTAATG
AAAACATTTCATATGAAGCCAAGTTTATGACTGAGATCACCCTACCATTTAGTAACTCAGAAAA
CTTTCACTTGCAAAGTGTTTGGAATTTTATGTACGTTATGGAAGCCGTCCCTTTCTGTTCTTAA
TCACATGTCTACTTAGCTGATTCAGGTTTGTTTTTCTGTTTGTAGCACACAAAATGAAGCCAGA
AGCCTTTCACGTATGAAATTACCTTGAATGCGAACAATGTTCTTTCAGATCACTAATGCTGTTT
TCACAATTACGAAGCTAAAATGTTCCCAATTTTAAGAAATCCTACTTCTTTCCACATTGATCTT
TTAACTTCTTGCTAGCTTTTGAGAATTTCAATACTTGCCTGAGATAGAAATACATTTTTCTTAT
AAGGTCTAGATGACTAAAGGCAGAGTAAGATTTTGTCAAAATAAAATGAGACCATGTTCTATTA
TAACTGTTCACAAGCACTGAAATTCTGAAGAGAGTTTTTGCTGTAAATTAAACTGGGTGATCTC
AAGTGCCTCAGTTAATGCACGTACAATATTCATTTGCTTGGTTGTGCTACCTCTCAGAAGTAAA
ACTTGTCACCTTATGAACTTATGAAGTGAGGATTTTTTTTTTAGGGGGGTATAATTTGTTTTGT
TTTCAGTGTGTGTATATGCTCTTTTTTTTTTTTTTTTTTTTTTTGTATACGTAGCCCAGGCTAA
CATGACTATGAAAATTAGTAGAAACTCCATTAATAAACCTTGTTCTTGCTTCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_022276683	(Get FASTA)	NCBI Sequence Viewer
	XP_038336880	(Get FASTA)	NCBI Sequence Viewer
	XP_038398233	(Get FASTA)	NCBI Sequence Viewer
	XP_038398234	(Get FASTA)	NCBI Sequence Viewer
	XP_038398235	(Get FASTA)	NCBI Sequence Viewer
	XP_038398236	(Get FASTA)	NCBI Sequence Viewer
	XP_038420607	(Get FASTA)	NCBI Sequence Viewer
	XP_038420627	(Get FASTA)	NCBI Sequence Viewer
	XP_038462397	(Get FASTA)	NCBI Sequence Viewer
	XP_038462398	(Get FASTA)	NCBI Sequence Viewer
	XP_038462399	(Get FASTA)	NCBI Sequence Viewer
	XP_038462400	(Get FASTA)	NCBI Sequence Viewer
	XP_038527063	(Get FASTA)	NCBI Sequence Viewer
	XP_038527064	(Get FASTA)	NCBI Sequence Viewer
	XP_038527065	(Get FASTA)	NCBI Sequence Viewer
	XP_038527066	(Get FASTA)	NCBI Sequence Viewer
	XP_849853	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000019929.3
	ENSCAFP00000055545.1
	ENSCAFP00000063897.2
	ENSCAFP00000072672.1
	ENSCAFP00030002522.1
	ENSCAFP00030002590.1
	ENSCAFP00030002619.1
	ENSCAFP00030002647.1
	ENSCAFP00845007106
	ENSCAFP00845007106.1
	ENSCAFP00845007109.1
	ENSCAFP00845007120.1

RefSeq Acc Id:	XP_849853 ⟸ XM_844760
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KQW9 (UniProtKB/TrEMBL), A0A8C0M1H0 (UniProtKB/TrEMBL), A0A8I3MWK4 (UniProtKB/TrEMBL), A0A8P0TR63 (UniProtKB/TrEMBL)
- Sequence:	show sequence MENMAEEELLPPEKEEVEVAQVQVPTPTPAPDSARVPAPAPDSAPASAPTPASAPAPAPALAQA PALSPSLASAPDEAESKRHISIQRQLADLEKLAFVTEGDFDSASSLNSESLDAGNKQSCPLCPK EKFRACNSHKLRRHLQNLHWKVSVEFEGYRMCICHLPCRPVKPNIIGEQISSKMGAHYHCIICS ATITRRTDMLGHVRRHVNKGETKSRYIAASAAKPPNEILKETDTDVQVCPNYSIPQKTDSYFNP KMKLNRQLIFCTLAALAEERKPLECLDAFGATGIMGLQWAKHLGSAVKVTINDLNENSVTLIQE NCHLNKLKVVVDSKEEEESDDILKEGEENLGNIKVTKMDANVLMHLRSFDFIHLDPFGTSVNYL DSAFRNIRNLGIVSVTSTDISSLYAKAQHVARRHYGCNIVRTEYYKELAARIVVAAVARAAARC NKGIEVLFAVALEHFVLVVVRVLRGPTSADETAKKIQYLIHCQWCEERIFQKDGNMVEENPYRQ LPCNCHGSMPGKTAIELGPLWSSSLFNTGFLKRMLFESLHHGLDDIQTLIKTLIFESECTPQSQ FSVHAPSNLNKQEEYGVFIKTTDDTTTDNYIAQGKRKGNETITTLAKRQKTDVSTEHPPFYYNI HRHSIKGMNMPKLKKFLCYLSQAGFRVSRTHFDPMGVRTDAPLMQFKSILLKYSTPTYTGGQSE GHVQSASEDTVADKVEMSVNDKAEPSSCRRW hide sequence

RefSeq Acc Id:

XP_022276683 ⟸ XM_022420975

- Peptide Label:

isoform X2

- Sequence:

show sequence

MCICHLPCRPVKPNIIGEQISSKMGAHYHCIICSATITRRTDMLGHVRRHVNKGETKSRYIAAS
AAKPPNEILKETDTDVQVCPNYSIPQKTDSYFNPKMKLNRQLIFCTLAALAEERKPLECLDAFG
ATGIMGLQWAKHLGSAVKVTINDLNENSVTLIQENCHLNKLKVVVDSKEEEESDDILKEGEENL
GNIKVTKMDANVLMHLRSFDFIHLDPFGTSVNYLDSAFRNIRNLGIVSVTSTDISSLYAKAQHV
ARRHYGCNIVRTEYYKELAARIVVAAVARAAARCNKGIEVLFAVALEHFVLVVVRVLRGPTSAD
ETAKKIQYLIHCQWCEERIFQKDGNMVEENPYRQLPCNCHGSMPGKTAIELGPLWSSSLFNTGF
LKRMLFESLHHGLDDIQTLIKTLIFESECTPQSQFSVHAPSNLNKQEEYGVFIKTTDDTTTDNY
IAQGKRKGNETITTLAKRQKTDVSTEHPPFYYNIHRHSIKGMNMPKLKKFLCYLSQAGFRVSRT
HFDPMGVRTDAPLMQFKSILLKYSTPTYTGGQSEGHVQSASEDTVADKVEMSVNDKAEPSSCRR
W

hide sequence

RefSeq Acc Id:

ENSCAFP00000055545 ⟸ ENSCAFT00000074151

RefSeq Acc Id:

ENSCAFP00000019929 ⟸ ENSCAFT00000021461

RefSeq Acc Id:

ENSCAFP00000063897 ⟸ ENSCAFT00000069998

RefSeq Acc Id:	XP_038336880 ⟸ XM_038480952
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038462398 ⟸ XM_038606470
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038462397 ⟸ XM_038606469
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038462399 ⟸ XM_038606471
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038462400 ⟸ XM_038606472
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038527064 ⟸ XM_038671136
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038527063 ⟸ XM_038671135
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KQW9 (UniProtKB/TrEMBL), A0A8C0M1H0 (UniProtKB/TrEMBL), A0A8I3MWK4 (UniProtKB/TrEMBL), A0A8P0TR63 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038527065 ⟸ XM_038671137
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038527066 ⟸ XM_038671138
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038420607 ⟸ XM_038564679
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038420627 ⟸ XM_038564699
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038398234 ⟸ XM_038542306
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038398233 ⟸ XM_038542305
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KQW9 (UniProtKB/TrEMBL), A0A8C0M1H0 (UniProtKB/TrEMBL), A0A8I3MWK4 (UniProtKB/TrEMBL), A0A8P0TR63 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038398235 ⟸ XM_038542307
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038398236 ⟸ XM_038542308
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSCAFP00845007120 ⟸ ENSCAFT00845009031

RefSeq Acc Id:

ENSCAFP00845007106 ⟸ ENSCAFT00845009011

RefSeq Acc Id:

ENSCAFP00845007109 ⟸ ENSCAFT00845009016

Protein Domains

C2H2-type

Promoters

RGD ID:

13683926

Promoter ID:

EPDNEW_C1993

Type:

multiple initiation site

Name:

TRMT1L_1

Description:

tRNA methyltransferase 1 like

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	7	18,329,737 - 18,329,797	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000013518	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030001534	UniProtKB/TrEMBL
	ENSCAFG00845005028	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000021461.4	UniProtKB/TrEMBL
	ENSCAFT00000069998.2	UniProtKB/TrEMBL
	ENSCAFT00000074151.2	UniProtKB/TrEMBL
	ENSCAFT00000097504.1	UniProtKB/TrEMBL
	ENSCAFT00030002838.1	UniProtKB/TrEMBL
	ENSCAFT00030002916.1	UniProtKB/TrEMBL
	ENSCAFT00030002951.1	UniProtKB/TrEMBL
	ENSCAFT00030002978.1	UniProtKB/TrEMBL
	ENSCAFT00845009011	ENTREZGENE
	ENSCAFT00845009011.1	UniProtKB/TrEMBL
	ENSCAFT00845009016.1	UniProtKB/TrEMBL
	ENSCAFT00845009031.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.56.70	UniProtKB/TrEMBL
	3.40.50.150	UniProtKB/TrEMBL
InterPro	SAM-dependent_MTases	UniProtKB/TrEMBL
	Trm1	UniProtKB/TrEMBL
	tRNA_met_Trm1_C	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	TRMT1L	ENTREZGENE
PANTHER	PTHR10631	UniProtKB/TrEMBL
	TRMT1-LIKE PROTEIN	UniProtKB/TrEMBL
Pfam	TRM	UniProtKB/TrEMBL
PROSITE	SAM_MT_TRM1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53335	UniProtKB/TrEMBL
UniProt	A0A8C0KQW9	ENTREZGENE
	A0A8C0LZG3_CANLF	UniProtKB/TrEMBL
	A0A8C0M1B6_CANLF	UniProtKB/TrEMBL
	A0A8C0M1H0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0M1J0_CANLF	UniProtKB/TrEMBL
	A0A8I3MWK4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MYJ3_CANLF	UniProtKB/TrEMBL
	A0A8I3RTX3_CANLF	UniProtKB/TrEMBL
	A0A8P0TR63	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A8P0PCK8	UniProtKB/TrEMBL
VGNC ID	VGNC:47857	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar