LIX1 (limb and CNS expressed 1) - Rat Genome Database

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Gene: LIX1 (limb and CNS expressed 1) Pan paniscus
Analyze
Symbol: LIX1
Name: limb and CNS expressed 1
RGD ID: 12049228
Description: INVOLVED IN autophagosome maturation (inferred); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Lix1 homolog; protein limb expression 1 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2492,341,779 - 92,392,872 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1590,495,426 - 90,546,497 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0592,403,352 - 92,454,437 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1597,957,252 - 98,008,268 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl597,957,252 - 98,008,268 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LIX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2492,341,779 - 92,392,872 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1590,495,426 - 90,546,497 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0592,403,352 - 92,454,437 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1597,957,252 - 98,008,268 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl597,957,252 - 98,008,268 (-)Ensemblpanpan1.1panPan2
LIX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38597,091,867 - 97,142,611 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl597,091,867 - 97,142,753 (-)EnsemblGRCh38hg38GRCh38
GRCh37596,427,571 - 96,478,315 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36596,453,330 - 96,504,195 (-)NCBINCBI36Build 36hg18NCBI36
Build 34596,453,329 - 96,504,195NCBI
Celera592,311,977 - 92,362,917 (-)NCBICelera
Cytogenetic Map5q15NCBI
HuRef591,617,282 - 91,668,221 (-)NCBIHuRef
CHM1_1595,860,186 - 95,911,122 (-)NCBICHM1_1
T2T-CHM13v2.0597,592,630 - 97,643,374 (-)NCBIT2T-CHM13v2.0
Lix1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391717,622,948 - 17,679,649 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1717,622,934 - 17,679,649 (+)EnsemblGRCm39 Ensembl
GRCm381717,402,686 - 17,459,387 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1717,402,672 - 17,459,387 (+)EnsemblGRCm38mm10GRCm38
MGSCv371717,539,650 - 17,596,351 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361717,107,487 - 17,162,241 (+)NCBIMGSCv36mm8
Celera1718,350,990 - 18,407,963 (+)NCBICelera
Cytogenetic Map17A3.2NCBI
cM Map179.77NCBI
Lix1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,802,044 - 66,859,040 (+)NCBIGRCr8
mRatBN7.2158,128,961 - 58,187,554 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl158,128,961 - 58,185,964 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx162,968,006 - 63,029,664 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0171,659,551 - 71,716,556 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0164,878,034 - 64,939,692 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0159,156,021 - 59,212,878 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl159,156,251 - 59,214,452 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0160,083,352 - 60,139,891 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4155,923,097 - 55,980,380 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1155,926,201 - 55,983,315 (+)NCBI
Celera154,323,682 - 54,380,588 (+)NCBICelera
Cytogenetic Map1q12NCBI
Lix1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541815,524,533 - 15,575,093 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541815,509,586 - 15,575,059 (+)NCBIChiLan1.0ChiLan1.0
LIX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1312,581,462 - 12,641,198 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl312,581,741 - 12,631,097 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha313,921,462 - 13,981,336 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0312,464,833 - 12,524,130 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl312,465,155 - 12,513,502 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1312,419,234 - 12,479,080 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0312,420,500 - 12,480,390 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0312,620,185 - 12,680,061 (+)NCBIUU_Cfam_GSD_1.0
Lix1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213168,138,660 - 168,187,162 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365236,323,971 - 6,373,351 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365236,324,014 - 6,373,323 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LIX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2103,744,330 - 103,792,578 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12103,741,379 - 103,801,879 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22107,547,073 - 107,624,643 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LIX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1490,920,248 - 90,971,833 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl490,923,102 - 90,971,208 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604939,566,972 - 39,618,310 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lix1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474315,744,779 - 15,794,573 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474315,744,882 - 15,794,567 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003817929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000046220   ⟹   ENSPPAP00000023396
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl597,957,252 - 98,008,268 (-)Ensembl
RefSeq Acc Id: XM_003817929   ⟹   XP_003817977
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2492,341,779 - 92,392,872 (-)NCBI
NHGRI_mPanPan1590,495,426 - 90,546,497 (-)NCBI
Mhudiblu_PPA_v0592,403,352 - 92,454,437 (-)NCBI
PanPan1.1597,957,252 - 98,008,268 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003817977 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000023396
  ENSPPAP00000023396.1
RefSeq Acc Id: XP_003817977   ⟸   XM_003817929
- UniProtKB: A0A2R9B1J2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000023396   ⟸   ENSPPAT00000046220


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034876 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000046220.1 UniProtKB/TrEMBL
InterPro LIX1 UniProtKB/TrEMBL
KEGG Report pps:100974115 UniProtKB/TrEMBL
NCBI Gene LIX1 ENTREZGENE
PANTHER ECTOPIC P GRANULES PROTEIN 5 HOMOLOG UniProtKB/TrEMBL
  PROTEIN LIMB EXPRESSION 1 HOMOLOG UniProtKB/TrEMBL
Pfam LIX1 UniProtKB/TrEMBL
UniProt A0A2R9B1J2 ENTREZGENE, UniProtKB/TrEMBL