SKOR2 (SKI family transcriptional corepressor 2) - Rat Genome Database

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Gene: SKOR2 (SKI family transcriptional corepressor 2) Pan paniscus
Analyze
Symbol: SKOR2
Name: SKI family transcriptional corepressor 2
RGD ID: 12048157
Description: ENCODES a protein that exhibits chromatin binding (ortholog); histone deacetylase binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cell development (ortholog); cerebellar Purkinje cell differentiation (ortholog); cerebellum morphogenesis (ortholog); ASSOCIATED WITH intellectual disability (ortholog); Microcephaly, Epilepsy, and Diabetes Syndrome (ortholog); Vici syndrome (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21764,741,516 - 64,787,115 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11850,434,117 - 50,479,718 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01840,594,124 - 40,639,720 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11843,979,245 - 43,997,434 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SKOR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21764,741,516 - 64,787,115 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11850,434,117 - 50,479,718 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01840,594,124 - 40,639,720 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11843,979,245 - 43,997,434 (-)NCBIpanpan1.1PanPan1.1panPan2
SKOR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381847,206,169 - 47,251,660 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1847,206,169 - 47,251,660 (-)EnsemblGRCh38hg38GRCh38
GRCh371844,732,540 - 44,778,031 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361843,000,291 - 43,029,552 (-)NCBINCBI36Build 36hg18NCBI36
Celera1841,579,319 - 41,626,006 (-)NCBICelera
Cytogenetic Map18q21.1NCBI
HuRef1841,586,480 - 41,623,743 (-)NCBIHuRef
CHM1_11844,733,580 - 44,770,699 (-)NCBICHM1_1
T2T-CHM13v2.01847,396,432 - 47,441,946 (-)NCBIT2T-CHM13v2.0
Skor2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391876,934,428 - 76,988,759 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1876,944,100 - 76,988,037 (+)EnsemblGRCm39 Ensembl
GRCm381876,846,733 - 76,901,064 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1876,856,405 - 76,900,342 (+)EnsemblGRCm38mm10GRCm38
MGSCv371877,095,144 - 77,139,081 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361877,060,652 - 77,098,605 (+)NCBIMGSCv36mm8
Celera1878,040,716 - 78,084,655 (+)NCBICelera
Cytogenetic Map18E3NCBI
cM Map1851.93NCBI
Skor2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81872,679,449 - 72,721,117 (+)NCBIGRCr8
mRatBN7.21870,404,431 - 70,446,330 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1870,404,489 - 70,440,342 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01873,145,596 - 73,199,395 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1873,157,973 - 73,193,377 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01872,836,465 - 72,877,011 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41873,821,250 - 73,864,209 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1868,920,342 - 68,974,524 (+)NCBICelera
Cytogenetic Map18q12.3NCBI
Skor2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540232,582,575 - 32,618,436 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540232,577,189 - 32,618,611 (-)NCBIChiLan1.0ChiLan1.0
SKOR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1744,250,822 - 44,289,737 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha743,735,496 - 43,774,017 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0744,204,550 - 44,243,076 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl744,204,550 - 44,243,129 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1743,904,624 - 43,943,147 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0743,959,109 - 43,997,423 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0744,242,454 - 44,280,984 (+)NCBIUU_Cfam_GSD_1.0
Skor2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494440,472,580 - 40,516,135 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936983161,836 - 197,276 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936983156,466 - 197,281 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SKOR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl196,803,098 - 96,844,492 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1196,795,362 - 96,842,360 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21309,491,307 - 309,538,198 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SKOR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11833,687,044 - 33,731,464 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1833,687,057 - 33,716,606 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660507,988,355 - 8,035,852 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Skor2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477810,758,013 - 10,809,789 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477810,757,829 - 10,807,277 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_034943633   ⟹   XP_034799524
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21764,741,516 - 64,787,115 (-)NCBI
NHGRI_mPanPan11850,434,117 - 50,479,718 (-)NCBI
Mhudiblu_PPA_v01840,594,124 - 40,639,720 (-)NCBI
RefSeq Acc Id: XM_057300405   ⟹   XP_057156388
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21764,766,533 - 64,787,115 (-)NCBI
NHGRI_mPanPan11850,459,134 - 50,479,718 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034799524 (Get FASTA)   NCBI Sequence Viewer  
  XP_057156388 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_034799524   ⟸   XM_034943633
- Peptide Label: isoform X1
RefSeq Acc Id: XP_057156388   ⟸   XM_057300405
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene SKOR2 ENTREZGENE